Clc02G16510 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G16510
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 28968709 .. 28970706 (-)
RNA-Seq Expression	Clc02G16510
Synteny	Clc02G16510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGGAACCTGGAAGGGCCGGTTCGGCCCTTTTAAAAAGAGCAGCAGCGGCAAAGGCAAAACGGACCCAAAAAGCTTGGGGTTTCGTAATTTTGTATTGTTGCTTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGTCCATTATCAAGGTAAATTCCGCTTCTCAACGCCTTCTTTTAATCGCATTTGTGGTTGCTTGCTGCGGAATCTCCTAGAATATGTACTCCGATTATTGTAATGTTCAACGTAACCGAGTGTTCCATTCAAAATTGCTTGTTTAGGTTGCTGTAATTCACCTCCCTGTTTTCTTCTACCTATTGGAAGACGATTTCGTTTTTTTTTTTTTTACTATTATTATGCTTTCCGGTGAACCATTTCGGCAGAGGAATCGTAATTCTGAGACTTTTGTTTTGGTTGGACATTCTTTCTGCGGATGCTTGGAATGTGTTTGGTGATTATCTGAGCTAAAATGGATTGAGATGGTGAATAGTTCTTTCCTCTGCAGAGAATGTCGTCAGAAGATTAAGTTTATGAGATTACATAAGAATTAGTGAGGATGTTTTTCTAATTTTGTTGTAATGATGGATCAGTGAGCAAACTTGATACGGTTCATACGTAGTTCCATTTCCAACTGTAGTTTTTTATTTAGCATCTTCAAGACATTAGTTCAGATGTTAAAATCATTGTCTGAAGCTCAGTCGTTAATTCTAAAATGATTGGAAATGGTTGAAGAATTATGAATGGTTGTTTATTTCTCTAGATTTAAAGGTTTTGATTGCACACTGACGGTGTTTTTCCTACTTATCTTTTGAACTTTGCGTCAGGAAATCCCACCACGGAAACTGGCTAAAGTTACGGTCGTTTCATGCCGAGCTGGAACAGGTTTCATTCTCATTTTTTGTATGGTTAATATTAGTGGGATCACCACCATTCTGAGGCATTTTAACTTAAAATTTCTATAGTTATATCTTATGTTCATCTTGCTCCGCCAATTACATTTATTGAAAAATAGAAAACCACTGCAAAATTGATCAAAACTGGAAAAGGTAATGATTGAATGAATGAAACAATGTACCATCACTTATGTAATATAATCCTGTACCCACCATATACTATCATGATTAGATTAGATTGAGAAAATTTTGGATTTCTGATTATATGAATTGCATTTGCAGCTTCGAAGCTTATGCTATCCTGTTGCTCAAATAAATCCATATCACTGAGTTGGGAAAGTTGTCATCCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTGTTATTAGCTGGCTACTGGGTAGGACCTGATGTTGATGACGGATGGGGATATATAGAAGCTTTTATTGATCGGATTACTTAACTATTCAAATTTTAAATTCCATTTCATGACTTTCTTCTGCTTACTATGCCTGATCTTAGTCGAAGCATTGTATGCAATAGTCACTTTCACCAAAATGTCTGAAACGGCTTCCTGTTTGTGACATTTTTAACTTGTTTGGCCTGGGAAGATAGATAAGTAACTTAGTTGGTAGTTGCTGAGAGGCTACTAGATTTAGGATTGATCCTCATTGTCATGAAATGTGAGGATGGTACAAGCTTATAAGTATGAAGCTAGCAGGGACTAGTATCGGGCTTTTAGAACAAATGTGTATTTTGCCACCGTGAGCTTGGCTTAGTGGTATTCGTATGCGCTCCGTTCCTAGAGGTCGGAGGCTCAATCTCCCAACTCCGGAGTTTTTGTACTCAACAATATCTTGTTCTATCTTGAATTTGAGTGGAGAGATCAAGGATTCTGGAGGATCTAGTTTGTTAACTGATAAGAACCAACAATTTGATCGATAAGTTTTGCTTATTGCAGTCTGCTGGCTTTATTATATATCCTTTGCCATTTGTTATACAGAAACAGATGGGAAATTGCCCGAGTTGCAAAATTAGAGCTGCCAGCAACTCGGTGGACGACTACTGA

mRNA sequence

CTGGAACCTGGAAGGGCCGGTTCGGCCCTTTTAAAAAGAGCAGCAGCGGCAAAGGCAAAACGGACCCAAAAAGCTTGGGGTTTCGTAATTTTGTATTGTTGCTTTCATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGTCCATTATCAAGGAAATCCCACCACGGAAACTGGCTAAAGTTACGGTCGTTTCATGCCGAGCTGGAACAGCTTCGAAGCTTATGCTATCCTGTTGCTCAAATAAATCCATATCACTGAGTTGGGAAAGTTGTCATCCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTGTTATTAGCTGGCTACTGGTCTGCTGGCTTTATTATATATCCTTTGCCATTTGTTATACAGAAACAGATGGGAAATTGCCCGAGTTGCAAAATTAGAGCTGCCAGCAACTCGGTGGACGACTACTGA

Coding sequence (CDS)

ATGGCGAGCTTCGTTTCTCTGAGCTTCTCCGTTCCACAGTCCATTATCAAGGAAATCCCACCACGGAAACTGGCTAAAGTTACGGTCGTTTCATGCCGAGCTGGAACAGCTTCGAAGCTTATGCTATCCTGTTGCTCAAATAAATCCATATCACTGAGTTGGGAAAGTTGTCATCCTGTACGGTTAACTTCAAGACCTTTTTGGGGCATAGTTTCTTCTAGTTCCAGGAATATGGTGTTATTAGCTGGCTACTGGTCTGCTGGCTTTATTATATATCCTTTGCCATTTGTTATACAGAAACAGATGGGAAATTGCCCGAGTTGCAAAATTAGAGCTGCCAGCAACTCGGTGGACGACTACTGA

Protein sequence

MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPVRLTSRPFWGIVSSSSRNMVLLAGYWSAGFIIYPLPFVIQKQMGNCPSCKIRAASNSVDDY

Homology

[Close]

BLAST of Clc02G16510 vs. NCBI nr
Match: XP_038890542.1 (uncharacterized protein LOC120080060 [Benincasa hispida])

HSP 1 Score: 142.5 bits (358), Expect = 2.4e-30
Identity = 69/85 (81.18%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MA+FVSLSFSVPQ  +KEIPPRKL++VTVVS RAGTASKL+LSCCSN SIS++W++CHPV
Sbjct: 1  MATFVSLSFSVPQPTLKEIPPRKLSEVTVVSSRAGTASKLVLSCCSNISISMNWKNCHPV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLT RPFWGIVSSSSR MVLL+GYW
Sbjct: 61 RLTPRPFWGIVSSSSRAMVLLSGYW 85

[Close]

BLAST of Clc02G16510 vs. NCBI nr
Match: XP_023545344.1 (uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-29
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ I KE+PP KLAKVTVV  RAGTAS  +LSCCSNKSIS++WE+CHPV
Sbjct: 1  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASTFVLSCCSNKSISMNWENCHPV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRN+V LAGYW
Sbjct: 61 RLTSRPFWGIVSSSSRNLV-LAGYW 84

[Close]

BLAST of Clc02G16510 vs. NCBI nr
Match: XP_022999037.1 (uncharacterized protein LOC111493548 [Cucurbita maxima])

HSP 1 Score: 137.9 bits (346), Expect = 5.8e-29
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ I KE+PP KLAKVTVV  RAGTASK +LSCCSNKSIS++WE+C PV
Sbjct: 1  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRN+V LAGYW
Sbjct: 61 RLTSRPFWGIVSSSSRNLV-LAGYW 84

[Close]

BLAST of Clc02G16510 vs. NCBI nr
Match: XP_022946526.1 (uncharacterized protein LOC111450562 [Cucurbita moschata])

HSP 1 Score: 135.6 bits (340), Expect = 2.9e-28
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ I KE+PP KLAKVTVV  RAGTASK +LSCC+NKSIS +WE+CHPV
Sbjct: 1  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRN+V LAGYW
Sbjct: 61 RLTSRPFWGIVSSSSRNLV-LAGYW 83

[Close]

BLAST of Clc02G16510 vs. NCBI nr
Match: KAA0048017.1 (hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 131.0 bits (328), Expect = 7.1e-27
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ  +KEIPP KLAK TVVS RAGTASKL+L C S KSIS++WE+   V
Sbjct: 1  MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWENFRSV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRNMVLL GYW
Sbjct: 61 RLTSRPFWGIVSSSSRNMVLLTGYW 85

[Close]

BLAST of Clc02G16510 vs. ExPASy TrEMBL
Match: A0A6J1K9Q0 (uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.8e-29
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ I KE+PP KLAKVTVV  RAGTASK +LSCCSNKSIS++WE+C PV
Sbjct: 1  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKPVLSCCSNKSISMNWENCQPV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRN+V LAGYW
Sbjct: 61 RLTSRPFWGIVSSSSRNLV-LAGYW 84

[Close]

BLAST of Clc02G16510 vs. ExPASy TrEMBL
Match: A0A6J1G3X3 (uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC111450562 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-28
Identity = 71/85 (83.53%), Postives = 77/85 (90.59%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ I KE+PP KLAKVTVV  RAGTASK +LSCC+NKSIS +WE+CHPV
Sbjct: 1  MASFVSLSFSVPQVIFKEMPPWKLAKVTVVPRRAGTASKFVLSCCTNKSIS-NWENCHPV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRN+V LAGYW
Sbjct: 61 RLTSRPFWGIVSSSSRNLV-LAGYW 83

[Close]

BLAST of Clc02G16510 vs. ExPASy TrEMBL
Match: A0A5A7U1B8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00850 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.4e-27
Identity = 68/85 (80.00%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ  +KEIPP KLAK TVVS RAGTASKL+L C S KSIS++WE+   V
Sbjct: 1  MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTASKLVLPCYSKKSISMNWENFRSV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRNMVLL GYW
Sbjct: 61 RLTSRPFWGIVSSSSRNMVLLTGYW 85

[Close]

BLAST of Clc02G16510 vs. ExPASy TrEMBL
Match: A0A5D3CPK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00650 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 67/85 (78.82%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ  +KEIPP KLAK TVVS RAGTA KL+L C S KSIS++WE+   V
Sbjct: 1  MASFVSLSFSVPQLTLKEIPPWKLAKATVVSRRAGTALKLVLPCYSKKSISMNWENFRSV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRNMVLL GYW
Sbjct: 61 RLTSRPFWGIVSSSSRNMVLLTGYW 85

[Close]

BLAST of Clc02G16510 vs. ExPASy TrEMBL
Match: A0A0A0LJQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-26
Identity = 67/85 (78.82%), Postives = 73/85 (85.88%), Query Frame = 0


Query: 1  MASFVSLSFSVPQSIIKEIPPRKLAKVTVVSCRAGTASKLMLSCCSNKSISLSWESCHPV 60
          MASFVSLSFSVPQ  +KEIPPRKLAK T+VS RAGTASKL+L   S KSIS++WE+   V
Sbjct: 1  MASFVSLSFSVPQLTLKEIPPRKLAKATLVSRRAGTASKLVLPWYSKKSISINWENFQSV 60

Query: 61 RLTSRPFWGIVSSSSRNMVLLAGYW 86
          RLTSRPFWGIVSSSSRNMVLL GYW
Sbjct: 61 RLTSRPFWGIVSSSSRNMVLLTGYW 85

The following BLAST results are available for this feature:

BLAST of Clc02G16510 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038890542.1	2.4e-30	81.18	uncharacterized protein LOC120080060 [Benincasa hispida]	[more]
XP_023545344.1	1.5e-29	83.53	uncharacterized protein LOC111804783 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022999037.1	5.8e-29	83.53	uncharacterized protein LOC111493548 [Cucurbita maxima]	[more]
XP_022946526.1	2.9e-28	83.53	uncharacterized protein LOC111450562 [Cucurbita moschata]	[more]
KAA0048017.1	7.1e-27	80.00	hypothetical protein E6C27_scaffold385G00850 [Cucumis melo var. makuwa]	[more]

BLAST of Clc02G16510 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G16510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9Q0	2.8e-29	83.53	uncharacterized protein LOC111493548 OS=Cucurbita maxima OX=3661 GN=LOC111493548...	[more]
A0A6J1G3X3	1.4e-28	83.53	uncharacterized protein LOC111450562 OS=Cucurbita moschata OX=3662 GN=LOC1114505...	[more]
A0A5A7U1B8	3.4e-27	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CPK7	1.7e-26	78.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LJQ7	1.7e-26	78.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G030030 PE=4 SV=1	[more]

BLAST of Clc02G16510 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G16510.2	Clc02G16510.2	mRNA