Clc02G14785 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G14785
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	AvrRpt-cleavage domain-containing protein
Location	ClcChr02: 27318745 .. 27319236 (-)
RNA-Seq Expression	Clc02G14785
Synteny	Clc02G14785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTTGGTGGTAGTCATCTCTTTGCCATTGATTTTCTTCTGCTTGTTGCTCGGTTTCGGGTGTTACTTTCTAGGCCGAGCGAAAGGGAGACAAGACATAAGGACTAATGCGCAGGTATTTGGTGTGCCCACGCCGCCCCCTGGTAGTAGTGGTGCAGCTCATTCGACATCGTCACCGCAGCCACTTTTCAAACCTGATAATTCCACCAATGTTTGATTAGTAATCAGATCTAAGTTCAATTCTTCACTGTACTGTTTGTCTATTGCAAAAGCCAAATTGGCTCGCAGGTTCTTCTTTGTGTGTGAGTGTGTAAATTCTGTACTATCAGTTTGAACTTCAATACTCTATGGATGAATCGTTTTCCAGTTATTGCCTGTCCTACAAGTTTTGTGCATGCAATCAAATAAACTGACCTTCGAAGTTAGGCACCACCATGATGATTCCTCAACCCTTCTGCAGCTACAATGCTTGAATAAAAGAACCCCATAA

mRNA sequence

ATGGGTTTGGTGGTAGTCATCTCTTTGCCATTGATTTTCTTCTGCTTGTTGCTCGGTTTCGGGTGTTACTTTCTAGGCCGAGCGAAAGGGAGACAAGACATAAGGACTAATGCGCAGGTATTTGGTGTGCCCACGCCGCCCCCTGGTAGTAGTGGTGCAGCTCATTCGACATCGTCACCGCAGCCACTTTTCAAACCTGATAATTCCACCAATTTATTGCCTGTCCTACAAGTTTTGTGCATGCAATCAAATAAACTGACCTTCGAAGTTAGGCACCACCATGATGATTCCTCAACCCTTCTGCAGCTACAATGCTTGAATAAAAGAACCCCATAA

Coding sequence (CDS)

ATGGGTTTGGTGGTAGTCATCTCTTTGCCATTGATTTTCTTCTGCTTGTTGCTCGGTTTCGGGTGTTACTTTCTAGGCCGAGCGAAAGGGAGACAAGACATAAGGACTAATGCGCAGGTATTTGGTGTGCCCACGCCGCCCCCTGGTAGTAGTGGTGCAGCTCATTCGACATCGTCACCGCAGCCACTTTTCAAACCTGATAATTCCACCAATTTATTGCCTGTCCTACAAGTTTTGTGCATGCAATCAAATAAACTGACCTTCGAAGTTAGGCACCACCATGATGATTCCTCAACCCTTCTGCAGCTACAATGCTTGAATAAAAGAACCCCATAA

Protein sequence

MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSPQPLFKPDNSTNLLPVLQVLCMQSNKLTFEVRHHHDDSSTLLQLQCLNKRTP

Homology

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BLAST of Clc02G14785 vs. NCBI nr
Match: XP_038891972.1 (uncharacterized protein LOC120081297 [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 3.8e-27
Identity = 66/72 (91.67%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ+FGVPTPPPG SGAAHS SS 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPG-SGAAHSPSSQ 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKPDNSTN+
Sbjct: 61 QPVFKPDNSTNV 71

[Close]

BLAST of Clc02G14785 vs. NCBI nr
Match: XP_008445862.1 (PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo] >KAA0034055.1 uncharacterized protein E6C27_scaffold65G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ+FGVPTPPPG SGAAHS SS 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPG-SGAAHSPSSQ 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKP+N+TN+
Sbjct: 61 QPVFKPENTTNV 71

[Close]

BLAST of Clc02G14785 vs. NCBI nr
Match: XP_004143612.1 (uncharacterized protein LOC101203814 [Cucumis sativus] >KGN50461.1 hypothetical protein Csa_000697 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 4.2e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ+FGVPTPPPG SGAAHS SS 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPG-SGAAHSPSSL 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKP+N+TN+
Sbjct: 61 QPVFKPENTTNV 71

[Close]

BLAST of Clc02G14785 vs. NCBI nr
Match: XP_022999592.1 (uncharacterized protein LOC111493917 [Cucurbita maxima])

HSP 1 Score: 120.2 bits (300), Expect = 1.2e-23
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ FGVP PPP SS AAHS S  
Sbjct: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPP-SSAAAHSLSPQ 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKPDNS N+
Sbjct: 61 QPIFKPDNSINV 71

[Close]

BLAST of Clc02G14785 vs. NCBI nr
Match: KAG7030778.1 (hypothetical protein SDJN02_04815, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-22
Identity = 58/71 (81.69%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MG+VVVISLPLI FC LLGFGCYFLGRAKGRQDIRTNAQVFGVP PPPG SG AH    P
Sbjct: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPG-SGLAHPPPPP 60

Query: 61 QPLFKPDNSTN 72
          +PLFKPDNS +
Sbjct: 61 EPLFKPDNSAH 70

[Close]

BLAST of Clc02G14785 vs. ExPASy TrEMBL
Match: A0A5A7SXY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00410 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ+FGVPTPPPG SGAAHS SS 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPG-SGAAHSPSSQ 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKP+N+TN+
Sbjct: 61 QPVFKPENTTNV 71

[Close]

BLAST of Clc02G14785 vs. ExPASy TrEMBL
Match: A0A1S3BED6 (uncharacterized protein LOC103488752 OS=Cucumis melo OX=3656 GN=LOC103488752 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ+FGVPTPPPG SGAAHS SS 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPG-SGAAHSPSSQ 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKP+N+TN+
Sbjct: 61 QPVFKPENTTNV 71

[Close]

BLAST of Clc02G14785 vs. ExPASy TrEMBL
Match: A0A0A0KRY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175840 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.1e-26
Identity = 64/72 (88.89%), Postives = 69/72 (95.83%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ+FGVPTPPPG SGAAHS SS 
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPG-SGAAHSPSSL 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKP+N+TN+
Sbjct: 61 QPVFKPENTTNV 71

[Close]

BLAST of Clc02G14785 vs. ExPASy TrEMBL
Match: A0A6J1KB93 (uncharacterized protein LOC111493917 OS=Cucurbita maxima OX=3661 GN=LOC111493917 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 5.6e-24
Identity = 61/72 (84.72%), Postives = 64/72 (88.89%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLV+VISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQ FGVP PPP SS AAHS S  
Sbjct: 1  MGLVMVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQTFGVPMPPP-SSAAAHSLSPQ 60

Query: 61 QPLFKPDNSTNL 73
          QP+FKPDNS N+
Sbjct: 61 QPIFKPDNSINV 71

[Close]

BLAST of Clc02G14785 vs. ExPASy TrEMBL
Match: A0A6J1JJX6 (uncharacterized protein LOC111485766 OS=Cucurbita maxima OX=3661 GN=LOC111485766 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 58/72 (80.56%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MG+VVVISLPLI FC LLGFGCYFLGRAKGRQDIRTNAQVFGVP PPPGS   AH    P
Sbjct: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSR-LAHPPPPP 60

Query: 61 QPLFKPDNSTNL 73
          +PLFKPDNS N+
Sbjct: 61 EPLFKPDNSANV 71

[Close]

BLAST of Clc02G14785 vs. TAIR 10
Match: AT1G31335.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-21
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 0


Query: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQVFGVPTPPPGSSGAAHSTSSP 60
          MGLVVVISLPLIFFCLLLGFGCYFLG+++GR++IRTN QV+G P PPPG+  A+    SP
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGAIAASSPPLSP 60

Query: 61 QPLFKPDNSTNL 73
              KPDNS N+
Sbjct: 61 HA--KPDNSHNV 70

The following BLAST results are available for this feature:

BLAST of Clc02G14785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891972.1	3.8e-27	91.67	uncharacterized protein LOC120081297 [Benincasa hispida]	[more]
XP_008445862.1	2.5e-26	88.89	PREDICTED: uncharacterized protein LOC103488752 [Cucumis melo] >KAA0034055.1 unc...	[more]
XP_004143612.1	4.2e-26	88.89	uncharacterized protein LOC101203814 [Cucumis sativus] >KGN50461.1 hypothetical ...	[more]
XP_022999592.1	1.2e-23	84.72	uncharacterized protein LOC111493917 [Cucurbita maxima]	[more]
KAG7030778.1	1.3e-22	81.69	hypothetical protein SDJN02_04815, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc02G14785 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G14785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXY6	1.2e-26	88.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BED6	1.2e-26	88.89	uncharacterized protein LOC103488752 OS=Cucumis melo OX=3656 GN=LOC103488752 PE=...	[more]
A0A0A0KRY6	2.1e-26	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G175840 PE=4 SV=1	[more]
A0A6J1KB93	5.6e-24	84.72	uncharacterized protein LOC111493917 OS=Cucurbita maxima OX=3661 GN=LOC111493917...	[more]
A0A6J1JJX6	1.1e-22	80.56	uncharacterized protein LOC111485766 OS=Cucurbita maxima OX=3661 GN=LOC111485766...	[more]

BLAST of Clc02G14785 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31335.1	7.5e-21	68.06	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..71
None	No IPR available	PANTHER	PTHR33727:SF15	BNACNNG19470D PROTEIN	coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G14785.1	Clc02G14785.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane