Clc02G13740 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G13740
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionHTH-type transcriptional regulator protein ptxE
LocationClcChr02: 25961756 .. 25962601 (+)
RNA-Seq ExpressionClc02G13740
SyntenyClc02G13740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCTCAATCACCACTCGCCATCATCTGACTCACTGAGTTCCCCAAACTCGGAAAGAAGGAACGAATTACGAAAACGAAAACTCCCAAATCCAAACACCAAAAATGGGCATTTGCGTGTCGTCAGATTCGATCAATGTTGCTACAGCTAAATTGATTCTTACAGATGGAACTTTGGTCGAATTCTCTTACCCAGTTAAGGTTTCTTACGTGCTACAAAAACATCCGGCGAGATTTATCTGCAACTCCGACGAGATGGACTTTGACGACGTCGTTTATGCCGTTGACGACGACGATGAGCTCCAACTCGGGCAGCTTTACTTTGCGTTGCCGTTGGACAGGCTGAACCAGCCGCTTCAGGCGGAGGAAATGGCGGCATTGGCCGTCAAGGCCAGTTCGGCGCTTATGAAGGCCGGCGGTGGAGGGCCGGAAAAATGTGGATCTAGGCGGACGGCGATTTCTCCGGTGGCGTTTTCCGATGAGGAGTTTAGGAAGGTTCCAAGAAGGGGATTGAAGAAGGGAATGGGGAGTGGTAGAAGTAGAAAATTTACTGCGAAATTGAGTGCAATTCCGGAATAATGTAGTTTTTGTAGGGTTAATTGTGTAAATAGGATATGGATTAGTTTGTTTTGGGGTTTGTGGAGATGAAGACGTTGCTTTCTTGTGGATGTTTCGTTTCTTCCGCATCCCATGGCAATGGCTGGCATGAGATTCTTTGTTGTCCACTTTTACATATTTACCCCTCGTAAACAAAATATATTCTAAAAACCTTTTTTCTCCTATTATTTTACTGCAAATGCCTTCCATAATTTTTTAATTGCTAAAAGTCAATTCACCTTAACAATTT

mRNA sequence

TTCGCTCAATCACCACTCGCCATCATCTGACTCACTGAGTTCCCCAAACTCGGAAAGAAGGAACGAATTACGAAAACGAAAACTCCCAAATCCAAACACCAAAAATGGGCATTTGCGTGTCGTCAGATTCGATCAATGTTGCTACAGCTAAATTGATTCTTACAGATGGAACTTTGGTCGAATTCTCTTACCCAGTTAAGGTTTCTTACGTGCTACAAAAACATCCGGCGAGATTTATCTGCAACTCCGACGAGATGGACTTTGACGACGTCGTTTATGCCGTTGACGACGACGATGAGCTCCAACTCGGGCAGCTTTACTTTGCGTTGCCGTTGGACAGGCTGAACCAGCCGCTTCAGGCGGAGGAAATGGCGGCATTGGCCGTCAAGGCCAGTTCGGCGCTTATGAAGGCCGGCGGTGGAGGGCCGGAAAAATGTGGATCTAGGCGGACGGCGATTTCTCCGGTGGCGTTTTCCGATGAGGAGTTTAGGAAGGTTCCAAGAAGGGGATTGAAGAAGGGAATGGGGAGTGGTAGAAGTAGAAAATTTACTGCGAAATTGAGTGCAATTCCGGAATAATGTAGTTTTTGTAGGGTTAATTGTGTAAATAGGATATGGATTAGTTTGTTTTGGGGTTTGTGGAGATGAAGACGTTGCTTTCTTGTGGATGTTTCGTTTCTTCCGCATCCCATGGCAATGGCTGGCATGAGATTCTTTGTTGTCCACTTTTACATATTTACCCCTCGTAAACAAAATATATTCTAAAAACCTTTTTTCTCCTATTATTTTACTGCAAATGCCTTCCATAATTTTTTAATTGCTAAAAGTCAATTCACCTTAACAATTT

Coding sequence (CDS)

ATGGGCATTTGCGTGTCGTCAGATTCGATCAATGTTGCTACAGCTAAATTGATTCTTACAGATGGAACTTTGGTCGAATTCTCTTACCCAGTTAAGGTTTCTTACGTGCTACAAAAACATCCGGCGAGATTTATCTGCAACTCCGACGAGATGGACTTTGACGACGTCGTTTATGCCGTTGACGACGACGATGAGCTCCAACTCGGGCAGCTTTACTTTGCGTTGCCGTTGGACAGGCTGAACCAGCCGCTTCAGGCGGAGGAAATGGCGGCATTGGCCGTCAAGGCCAGTTCGGCGCTTATGAAGGCCGGCGGTGGAGGGCCGGAAAAATGTGGATCTAGGCGGACGGCGATTTCTCCGGTGGCGTTTTCCGATGAGGAGTTTAGGAAGGTTCCAAGAAGGGGATTGAAGAAGGGAATGGGGAGTGGTAGAAGTAGAAAATTTACTGCGAAATTGAGTGCAATTCCGGAATAA

Protein sequence

MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAVDDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISPVAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE
Homology
[Close]
BLAST of Clc02G13740 vs. NCBI nr
Match: XP_038902080.1 (uncharacterized protein LOC120088720 [Benincasa hispida])

HSP 1 Score: 283.5 bits (724), Expect = 1.1e-72
Identity = 148/157 (94.27%), Postives = 151/157 (96.18%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGICVSSD+INVATAKLILTDGTLVEFSYPVKVSY+LQKHPA FICNSDEMDFDDVVYAV
Sbjct: 1   MGICVSSDAINVATAKLILTDGTLVEFSYPVKVSYILQKHPASFICNSDEMDFDDVVYAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
           DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGG EKCGSRRTAISP
Sbjct: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGTEKCGSRRTAISP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           V FSDEEFRK PR+GLKK  GSGRSRKFTAKLSAIPE
Sbjct: 121 VTFSDEEFRKGPRKGLKK--GSGRSRKFTAKLSAIPE 155

[Close]
BLAST of Clc02G13740 vs. NCBI nr
Match: XP_022971678.1 (uncharacterized protein LOC111470350 [Cucurbita maxima])

HSP 1 Score: 255.0 bits (650), Expect = 4.3e-64
Identity = 132/157 (84.08%), Postives = 141/157 (89.81%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS+NVATAKLILTDGTL+EFSYPVKVS++L KHPA FICNSD+MDFDD VYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
            DDD LQLG LYFALPLDRLNQPL  EEMAALAVKASSAL+KAG GG EK GSRRTA+SP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           VAFSDEEFRK PRRGL+K  GSGR RKF AKLSAIPE
Sbjct: 121 VAFSDEEFRKPPRRGLQK--GSGRGRKFRAKLSAIPE 155

[Close]
BLAST of Clc02G13740 vs. NCBI nr
Match: XP_023512544.1 (uncharacterized protein LOC111777254 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.4 bits (638), Expect = 1.0e-62
Identity = 129/157 (82.17%), Postives = 139/157 (88.54%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS+NVATAKLILTDGTL+EFSYPVKVS++L KHPA FICNSD+MDFDD VYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
            DDD LQLG LYFALPLDRLNQPL  EEMAALAVKASSAL+KAG GG EK GSRRTA+SP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           +AFSDEEFRK PRR L+KG G G  RKF AKLSAIPE
Sbjct: 121 LAFSDEEFRKPPRRSLQKGSGGG--RKFRAKLSAIPE 155

[Close]
BLAST of Clc02G13740 vs. NCBI nr
Match: XP_022928071.1 (uncharacterized protein LOC111434966 [Cucurbita moschata] >KAG6571423.1 hypothetical protein SDJN03_30338, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011189.1 hypothetical protein SDJN02_27987, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 247.7 bits (631), Expect = 6.8e-62
Identity = 128/157 (81.53%), Postives = 138/157 (87.90%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS+NVATAKLILTDGTL+EFSYPVKVS++L KHPA FICNSD+MDFDD VYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
            DDD LQLG LYFALPLDRLNQPL  EEMAALAVKASSAL+KAG GG EK GSRRTA+SP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           +AFSDEEFRK P R L+KG G G  RKF AKLSAIPE
Sbjct: 121 LAFSDEEFRKPPGRSLQKGSGGG--RKFRAKLSAIPE 155

[Close]
BLAST of Clc02G13740 vs. NCBI nr
Match: XP_022149511.1 (uncharacterized protein LOC111017924 [Momordica charantia])

HSP 1 Score: 245.0 bits (624), Expect = 4.4e-61
Identity = 133/157 (84.71%), Postives = 138/157 (87.90%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS NVATAKLILTDGTL+E+SYPVKVSYVLQK PA FICNSDEMDFDDVV A+
Sbjct: 1   MGICISSDSTNVATAKLILTDGTLLEYSYPVKVSYVLQKDPASFICNSDEMDFDDVVSAI 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
           DD DELQLGQLYFALPLDRLNQPL AEEMAALAVKAS+ALMKAGG   EKCGSRRTAISP
Sbjct: 61  DDGDELQLGQLYFALPLDRLNQPLHAEEMAALAVKASAALMKAGG---EKCGSRRTAISP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
             FSDEEF KV R   KK  GSGR RKFTAKLSAIPE
Sbjct: 121 ALFSDEEFGKVQRSVAKK--GSGRRRKFTAKLSAIPE 152

[Close]
BLAST of Clc02G13740 vs. ExPASy TrEMBL
Match: A0A6J1I7K7 (uncharacterized protein LOC111470350 OS=Cucurbita maxima OX=3661 GN=LOC111470350 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 2.1e-64
Identity = 132/157 (84.08%), Postives = 141/157 (89.81%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS+NVATAKLILTDGTL+EFSYPVKVS++L KHPA FICNSD+MDFDD VYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
            DDD LQLG LYFALPLDRLNQPL  EEMAALAVKASSAL+KAG GG EK GSRRTA+SP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           VAFSDEEFRK PRRGL+K  GSGR RKF AKLSAIPE
Sbjct: 121 VAFSDEEFRKPPRRGLQK--GSGRGRKFRAKLSAIPE 155

[Close]
BLAST of Clc02G13740 vs. ExPASy TrEMBL
Match: A0A6J1EJ90 (uncharacterized protein LOC111434966 OS=Cucurbita moschata OX=3662 GN=LOC111434966 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.3e-62
Identity = 128/157 (81.53%), Postives = 138/157 (87.90%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS+NVATAKLILTDGTL+EFSYPVKVS++L KHPA FICNSD+MDFDD VYAV
Sbjct: 1   MGICISSDSVNVATAKLILTDGTLLEFSYPVKVSFLLHKHPATFICNSDDMDFDDAVYAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
            DDD LQLG LYFALPLDRLNQPL  EEMAALAVKASSAL+KAG GG EK GSRRTA+SP
Sbjct: 61  HDDDHLQLGHLYFALPLDRLNQPLHPEEMAALAVKASSALIKAGAGGTEKSGSRRTAVSP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           +AFSDEEFRK P R L+KG G G  RKF AKLSAIPE
Sbjct: 121 LAFSDEEFRKPPGRSLQKGSGGG--RKFRAKLSAIPE 155

[Close]
BLAST of Clc02G13740 vs. ExPASy TrEMBL
Match: A0A6J1D8L2 (uncharacterized protein LOC111017924 OS=Momordica charantia OX=3673 GN=LOC111017924 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 133/157 (84.71%), Postives = 138/157 (87.90%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS NVATAKLILTDGTL+E+SYPVKVSYVLQK PA FICNSDEMDFDDVV A+
Sbjct: 1   MGICISSDSTNVATAKLILTDGTLLEYSYPVKVSYVLQKDPASFICNSDEMDFDDVVSAI 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
           DD DELQLGQLYFALPLDRLNQPL AEEMAALAVKAS+ALMKAGG   EKCGSRRTAISP
Sbjct: 61  DDGDELQLGQLYFALPLDRLNQPLHAEEMAALAVKASAALMKAGG---EKCGSRRTAISP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
             FSDEEF KV R   KK  GSGR RKFTAKLSAIPE
Sbjct: 121 ALFSDEEFGKVQRSVAKK--GSGRRRKFTAKLSAIPE 152

[Close]
BLAST of Clc02G13740 vs. ExPASy TrEMBL
Match: A0A6J1L0H7 (uncharacterized protein LOC111499928 OS=Cucurbita maxima OX=3661 GN=LOC111499928 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.9e-60
Identity = 125/157 (79.62%), Postives = 140/157 (89.17%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS NV+TAKLIL+DGTL+E+SYPVKVSYVLQK PA FICNSD+MDF+DVV AV
Sbjct: 1   MGICISSDSPNVSTAKLILSDGTLLEYSYPVKVSYVLQKDPASFICNSDDMDFNDVVNAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
           DD+DELQLGQLYFALPL++LN+PL AE+MAALAVKASSALMKAGGGG EKCGSRR    P
Sbjct: 61  DDEDELQLGQLYFALPLEKLNKPLHAEDMAALAVKASSALMKAGGGGSEKCGSRR----P 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           V FS+EE RK PRRG+KKG  +G SRKFTAKL AIPE
Sbjct: 121 VVFSEEELRKGPRRGVKKGTRNGGSRKFTAKLCAIPE 153

[Close]
BLAST of Clc02G13740 vs. ExPASy TrEMBL
Match: A0A6J1G7I2 (uncharacterized protein LOC111451454 OS=Cucurbita moschata OX=3662 GN=LOC111451454 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 6.9e-60
Identity = 125/157 (79.62%), Postives = 139/157 (88.54%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC+SSDS NV+TAKLIL+DGTL+E+SYPVKVSYVL K PA FICNSD+MDF+DVV AV
Sbjct: 1   MGICISSDSPNVSTAKLILSDGTLLEYSYPVKVSYVLHKDPASFICNSDDMDFNDVVTAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
           DDDDELQLGQLYFALPL++LN+PL AE+MAALAVKASSALMKAGGGG EKCGSRR     
Sbjct: 61  DDDDELQLGQLYFALPLEKLNKPLHAEDMAALAVKASSALMKAGGGGSEKCGSRRA---- 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSRKFTAKLSAIPE 158
           V FS+EE RK PR+G+KKG GSG SRKFTAKL AIPE
Sbjct: 121 VVFSEEELRKGPRKGVKKGTGSGGSRKFTAKLCAIPE 153

[Close]
BLAST of Clc02G13740 vs. TAIR 10
Match: AT2G23690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G37240.1); Has 243 Blast hits to 243 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 171.0 bits (432), Expect = 7.5e-43
Identity = 97/163 (59.51%), Postives = 115/163 (70.55%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC S +S  VATAKLIL DG ++EF+ PVKV YVLQK+P  FICNSD+MDFD+VV A+
Sbjct: 1   MGICSSYESTQVATAKLILHDGRMMEFTSPVKVGYVLQKNPMCFICNSDDMDFDNVVSAI 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGG-GPEKCGSRRTAIS 120
             D+E QLGQLYFALPL  L+  L+AEEMAALAVKASSALM++GG  G +KC  RR  +S
Sbjct: 61  SADEEFQLGQLYFALPLSSLHHSLKAEEMAALAVKASSALMRSGGSCGRDKCRCRRKCVS 120

Query: 121 PVAFSDEEFRKV-----PRRGLKKGMGSGRSRKFTAKLSAIPE 158
           PV FS      V      R G ++G G    RK+ AKLS I E
Sbjct: 121 PVIFSARRVAAVGANGETRNGKRRGGGGSGRRKYAAKLSKIEE 163

[Close]
BLAST of Clc02G13740 vs. TAIR 10
Match: AT4G37240.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 154.8 bits (390), Expect = 5.6e-38
Identity = 89/146 (60.96%), Postives = 105/146 (71.92%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MGIC SS+S  VATAKLIL DG ++EF+ PVKV YVL K+P  FICNSD+MDFDD V A+
Sbjct: 1   MGICSSSESTQVATAKLILQDGRMMEFANPVKVGYVLLKYPMCFICNSDDMDFDDAVAAI 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
             D+ELQLGQ+YFALPL  L QPL+AEEMAALAVKASSALM+ GGG     G RR  + P
Sbjct: 61  SADEELQLGQIYFALPLCWLRQPLKAEEMAALAVKASSALMRGGGG-----GCRRKCVEP 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGRSR 147
           +  SD+   +V       G GSGR +
Sbjct: 121 IV-SDKLRMRVGSGDDTVGSGSGRRK 140

[Close]
BLAST of Clc02G13740 vs. TAIR 10
Match: AT3G50800.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66580.1); Has 249 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-35
Identity = 88/165 (53.33%), Postives = 109/165 (66.06%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MG C S +S    TAKLIL DGTL EFS PVKV  +LQK+P  F+CNSD+MDFDD V AV
Sbjct: 1   MGACASRESRRTETAKLILPDGTLQEFSTPVKVWQILQKNPTSFVCNSDDMDFDDAVLAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
              ++L+ G+LYF LPL  LN PL+A+EMAALAVKASSAL K+GGGG             
Sbjct: 61  PGSEDLRPGELYFVLPLTWLNHPLRADEMAALAVKASSALAKSGGGG------------- 120

Query: 121 VAFSDEE-----FRKVPRRGL-KKGMGSGRS--RKFTAKLSAIPE 158
           ++++DE+      R+V R G   +G G G    RKFTA+LS+I E
Sbjct: 121 LSYNDEDVGECRVRRVKRNGCGGRGCGGGGKGRRKFTAELSSIAE 152

[Close]
BLAST of Clc02G13740 vs. TAIR 10
Match: AT5G66580.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50800.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 145.6 bits (366), Expect = 3.4e-35
Identity = 88/162 (54.32%), Postives = 106/162 (65.43%), Query Frame = 0 

Query: 1   MGICVSSDSINVATAKLILTDGTLVEFSYPVKVSYVLQKHPARFICNSDEMDFDDVVYAV 60
           MG C S +S+   +AKLIL DGTL EFS PVKV  +LQK+P  F+CNSDEMDFDD V AV
Sbjct: 1   MGACASRESLRSDSAKLILLDGTLQEFSSPVKVWQILQKNPTSFVCNSDEMDFDDAVSAV 60

Query: 61  DDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGGGPEKCGSRRTAISP 120
             ++EL+ GQLYF LPL  LN PL+AEEMAALAVKASSAL K+GG G        +    
Sbjct: 61  AGNEELRSGQLYFVLPLTWLNHPLRAEEMAALAVKASSALTKSGGVG------WVSGDDD 120

Query: 121 VAFSDEEFRKVPRRGLKKGMGSGR-----SRKFTAKLSAIPE 158
           V  S++ ++K    G+K   G GR      R+FTA LS I E
Sbjct: 121 VTTSEKTYQKKNIAGVKTNGGGGRGCGKGKRRFTANLSTIAE 156

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BLAST of Clc02G13740 vs. TAIR 10
Match: AT1G76600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G21010.1); Has 220 Blast hits to 220 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15
Identity = 54/136 (39.71%), Postives = 77/136 (56.62%), Query Frame = 0 

Query: 1   MGICVSSDS----INVATAKLILTDGTLVEFSYPVKVSYVLQKH----------PARFIC 60
           MG+CVS +      +  TAK++  +G L E+  PV  S VL+             + F+C
Sbjct: 1   MGLCVSVNRNEYVSSSTTAKIVTINGDLREYDVPVLASQVLESESTSSSSSSSSSSYFLC 60

Query: 61  NSDEMDFDDVVYAVDDDDELQLGQLYFALPLDRLNQPLQAEEMAALAVKASSALMKAGGG 120
           NSD + +DD + A++ D+ LQ  Q+YF LP+ +    L A +MAALAVKAS A+ KA G 
Sbjct: 61  NSDSLYYDDFIPAIESDEILQANQIYFVLPISKRQYRLSASDMAALAVKASVAIEKAAG- 120

Query: 121 GPEKCGSRRTA-ISPV 122
             +K   RR+  ISPV
Sbjct: 121 --KKNRRRRSGRISPV 133

The following BLAST results are available for this feature:
BLAST of Clc02G13740 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038902080.11.1e-7294.27uncharacterized protein LOC120088720 [Benincasa hispida][more]
XP_022971678.14.3e-6484.08uncharacterized protein LOC111470350 [Cucurbita maxima][more]
XP_023512544.11.0e-6282.17uncharacterized protein LOC111777254 [Cucurbita pepo subsp. pepo][more]
XP_022928071.16.8e-6281.53uncharacterized protein LOC111434966 [Cucurbita moschata] >KAG6571423.1 hypothet... [more]
XP_022149511.14.4e-6184.71uncharacterized protein LOC111017924 [Momordica charantia][more]
BLAST of Clc02G13740 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc02G13740 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1I7K72.1e-6484.08uncharacterized protein LOC111470350 OS=Cucurbita maxima OX=3661 GN=LOC111470350... [more]
A0A6J1EJ903.3e-6281.53uncharacterized protein LOC111434966 OS=Cucurbita moschata OX=3662 GN=LOC1114349... [more]
A0A6J1D8L22.1e-6184.71uncharacterized protein LOC111017924 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1L0H76.9e-6079.62uncharacterized protein LOC111499928 OS=Cucurbita maxima OX=3661 GN=LOC111499928... [more]
A0A6J1G7I26.9e-6079.62uncharacterized protein LOC111451454 OS=Cucurbita moschata OX=3662 GN=LOC1114514... [more]
BLAST of Clc02G13740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G23690.17.5e-4359.51unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT4G37240.15.6e-3860.96unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT3G50800.13.4e-3553.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT5G66580.13.4e-3554.32unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
AT1G76600.11.7e-1539.71unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025322Protein of unknown function DUF4228, plantPFAMPF14009DUF4228coord: 1..157
e-value: 3.5E-25
score: 89.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 135..157
NoneNo IPR availablePANTHERPTHR33052:SF128HTH-TYPE TRANSCRIPTIONAL REGULATORcoord: 1..157
NoneNo IPR availablePANTHERPTHR33052DUF4228 DOMAIN PROTEIN-RELATEDcoord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G13740.1Clc02G13740.1mRNA