Clc02G13430 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G13430
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationClcChr02: 25457647 .. 25458125 (-)
RNA-Seq ExpressionClc02G13430
SyntenyClc02G13430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACAAACTTTGCTCTCTTAAGCAAATGGCTATGGAGATTCACATCTGAAGGCAATACCTAATCATCATTTCCAAATACAATCAGACCTTCATGGGAGAGATCCCCATAAATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGACCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAAACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAGGGCCTATGGAAATCCTCAATCCTGAAAAATGTAAAAAATTTTTATAGACTACCC

mRNA sequence

ATACAAACTTTGCTCTCTTAAGCAAATGGCTATGGAGATTCACATCTGAAGGCAATACCTAATCATCATTTCCAAATACAATCAGACCTTCATGGGAGAGATCCCCATAAATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGACCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAAACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAGGGCCTATGGAAATCCTCAATCCTGAAAAATGTAAAAAATTTTTATAGACTACCC

Coding sequence (CDS)

ATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGACCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAAACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAG

Protein sequence

MARSLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF
Homology
BLAST of Clc02G13430 vs. NCBI nr
Match: TYK21646.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 9   ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQ 68
           + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    
Sbjct: 11  VPRLYALSKFKHDSVKDMWNPHTNDWDIQIQRPLRDHEVQIWNDIKVVPVAPNQDRGASS 70

Query: 69  PIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF 105
           PIWK N +G F ++S + A+  +    ++   P+IF
Sbjct: 71  PIWKINPDGVFDIASVKRALIDNDSFSTTTFQPNIF 106

BLAST of Clc02G13430 vs. NCBI nr
Match: KAA0041372.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 9   ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQ 68
           + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    
Sbjct: 11  VPRLYALSKFKHDSVKDMWNPHTNDWDIQIQRPLRDHEVQIWNDIKVVPVAPNQDRGASS 70

Query: 69  PIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF 105
           PIWK N +G F + S + A+  +    ++   P+IF
Sbjct: 71  PIWKINPDGVFDIVSVKRALIDNDSFSTTTFQPNIF 106

BLAST of Clc02G13430 vs. NCBI nr
Match: TYK19715.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.4e-09
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 0

Query: 5   LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERK 64
           L+ +I RL+AL+     TVKE W   T+ WN++P RPL DR+   W +IK   P  +  +
Sbjct: 74  LSHQIPRLYALSNLQTATVKEVWDQSTDGWNINPRRPLNDREKQTWESIKISLPQIHSNR 133

Query: 65  WTYQPIWKPNKNGSFRVSSTQEAIYQ 91
            T +P W+P+ +  + V+S +E  ++
Sbjct: 134 GTSKPSWRPSDSNVYTVASGKELAFK 159

BLAST of Clc02G13430 vs. NCBI nr
Match: KAA0047998.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 9.8e-09
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0

Query: 4   SLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNER 63
           SL +K  RL+AL+   + TVKE W P  NDWN  P RPL +R+   W  +K   P   + 
Sbjct: 532 SLNQKAPRLYALSSCKEATVKEVWDPGINDWNFKPRRPLNERESNAWQLLKNSLPTITQN 591

Query: 64  KWTYQPIWKPNKNGSFRVSSTQEAIYQ--HH 93
               +P+W    N ++   S ++A  +  HH
Sbjct: 592 STDDRPVWNKESNDTYTTRSAKKAFLEEAHH 622

BLAST of Clc02G13430 vs. NCBI nr
Match: KAA0056929.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK26358.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08
Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 5   LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERK 64
           LA    RLFAL+     +VK+ W   ++DWN  P RP+   ++ +W+  +T   AP++ +
Sbjct: 132 LATFAPRLFALSNIQQGSVKDHWRKASSDWNFQPRRPMRSHEVHLWDVPETSFSAPDQSR 191

Query: 65  WTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF 105
               PIWK N +G+F ++S ++A+      D + ++P  F
Sbjct: 192 GEDCPIWKFNSSGAFDIASIKKALLNDGHHDVASISPSTF 231

BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5D3DDJ7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00080 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 0

Query: 9   ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQ 68
           + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    
Sbjct: 11  VPRLYALSKFKHDSVKDMWNPHTNDWDIQIQRPLRDHEVQIWNDIKVVPVAPNQDRGASS 70

Query: 69  PIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF 105
           PIWK N +G F ++S + A+  +    ++   P+IF
Sbjct: 71  PIWKINPDGVFDIASVKRALIDNDSFSTTTFQPNIF 106

BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5A7TD61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00170 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0

Query: 9   ISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQ 68
           + RL+AL++    +VK+ W+P TNDW++   RPL D ++ +WN IK +  APN+ +    
Sbjct: 11  VPRLYALSKFKHDSVKDMWNPHTNDWDIQIQRPLRDHEVQIWNDIKVVPVAPNQDRGASS 70

Query: 69  PIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF 105
           PIWK N +G F + S + A+  +    ++   P+IF
Sbjct: 71  PIWKINPDGVFDIVSVKRALIDNDSFSTTTFQPNIF 106

BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5D3D823 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00130 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09
Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 0

Query: 5   LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERK 64
           L+ +I RL+AL+     TVKE W   T+ WN++P RPL DR+   W +IK   P  +  +
Sbjct: 74  LSHQIPRLYALSNLQTATVKEVWDQSTDGWNINPRRPLNDREKQTWESIKISLPQIHSNR 133

Query: 65  WTYQPIWKPNKNGSFRVSSTQEAIYQ 91
            T +P W+P+ +  + V+S +E  ++
Sbjct: 134 GTSKPSWRPSDSNVYTVASGKELAFK 159

BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5A7TYF4 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00630 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0

Query: 4   SLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNER 63
           SL +K  RL+AL+   + TVKE W P  NDWN  P RPL +R+   W  +K   P   + 
Sbjct: 532 SLNQKAPRLYALSSCKEATVKEVWDPGINDWNFKPRRPLNERESNAWQLLKNSLPTITQN 591

Query: 64  KWTYQPIWKPNKNGSFRVSSTQEAIYQ--HH 93
               +P+W    N ++   S ++A  +  HH
Sbjct: 592 STDDRPVWNKESNDTYTTRSAKKAFLEEAHH 622

BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5D3DS76 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00170 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.2e-09
Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 0

Query: 5   LAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERK 64
           LA    RLFAL+     +VK+ W   ++DWN  P RP+   ++ +W+  +T   AP++ +
Sbjct: 132 LATFAPRLFALSNIQQGSVKDHWRKASSDWNFQPRRPMRSHEVHLWDVPETSFSAPDQSR 191

Query: 65  WTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF 105
               PIWK N +G+F ++S ++A+      D + ++P  F
Sbjct: 192 GEDCPIWKFNSSGAFDIASIKKALLNDGHHDVASISPSTF 231

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK21646.12.5e-1236.46LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0041372.15.6e-1236.46LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK19715.14.4e-0936.05LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0047998.19.8e-0935.16LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0056929.11.3e-0832.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK263... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DDJ71.2e-1236.46LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TD612.7e-1236.46LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3D8232.1e-0936.05LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TYF44.8e-0935.16LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DS766.2e-0932.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G13430.1Clc02G13430.1mRNA