Clc02G13430 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATACAAACTTTGCTCTCTTAAGCAAATGGCTATGGAGATTCACATCTGAAGGCAATACCTAATCATCATTTCCAAATACAATCAGACCTTCATGGGAGAGATCCCCATAAATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGACCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAAACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAGGGCCTATGGAAATCCTCAATCCTGAAAAATGTAAAAAATTTTTATAGACTACCC ATACAAACTTTGCTCTCTTAAGCAAATGGCTATGGAGATTCACATCTGAAGGCAATACCTAATCATCATTTCCAAATACAATCAGACCTTCATGGGAGAGATCCCCATAAATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGACCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAAACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAGGGCCTATGGAAATCCTCAATCCTGAAAAATGTAAAAAATTTTTATAGACTACCC ATGGCACGATCATTAGCTGAGAAAATTTCCAGACTTTTTGCACTTACACAACAAACAGACATGACCGTGAAGGAAGCTTGGCATCCCATAACAAATGATTGGAACCTGGACCCGCATAGACCCCTACTTGATAGGGACTTGACTGTATGGAATGCCATAAAAACACTCCATCCCGCTCCTAATGAGAGAAAATGGACATATCAACCCATATGGAAGCCAAACAAAAATGGCAGTTTCAGGGTCTCCTCCACCCAAGAAGCAATATATCAGCATCATCCCAGAGACTCCTCTTTGCTGAATCCTCACATTTTTTAG MARSLAEKISRLFALTQQTDMTVKEAWHPITNDWNLDPHRPLLDRDLTVWNAIKTLHPAPNERKWTYQPIWKPNKNGSFRVSSTQEAIYQHHPRDSSLLNPHIF Homology
BLAST of Clc02G13430 vs. NCBI nr
Match: TYK21646.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 82.4 bits (202), Expect = 2.5e-12 Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 0
BLAST of Clc02G13430 vs. NCBI nr
Match: KAA0041372.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 81.3 bits (199), Expect = 5.6e-12 Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0
BLAST of Clc02G13430 vs. NCBI nr
Match: TYK19715.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 71.6 bits (174), Expect = 4.4e-09 Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 0
BLAST of Clc02G13430 vs. NCBI nr
Match: KAA0047998.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 70.5 bits (171), Expect = 9.8e-09 Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0
BLAST of Clc02G13430 vs. NCBI nr
Match: KAA0056929.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK26358.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 70.1 bits (170), Expect = 1.3e-08 Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 0
BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5D3DDJ7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00080 PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12 Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 0
BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5A7TD61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00170 PE=4 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12 Identity = 35/96 (36.46%), Postives = 58/96 (60.42%), Query Frame = 0
BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5D3D823 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00130 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 2.1e-09 Identity = 31/86 (36.05%), Postives = 51/86 (59.30%), Query Frame = 0
BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5A7TYF4 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00630 PE=4 SV=1) HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09 Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = 0
BLAST of Clc02G13430 vs. ExPASy TrEMBL
Match: A0A5D3DS76 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00170 PE=4 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 6.2e-09 Identity = 32/100 (32.00%), Postives = 56/100 (56.00%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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