Clc02G12980 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G12980
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease H
Location	ClcChr02: 24905729 .. 24906721 (-)
RNA-Seq Expression	Clc02G12980
Synteny	Clc02G12980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCACCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGGTAGGACCTATAACACCTAAGTCATCGAGCGGACACTCTTATATTCTTGCTGGAACAGATTACTTTTCAAGTGGGCTGAAGTTGTGCCTTTAAGAGAAGCAAAAAAAGAAAAAATCGTAAGTTTTGTTCGTTCGCACATCATTTATCGATTCGGGATCCCTCATCGTATTGTCACAGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACAAGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAAAAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGAAATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG

mRNA sequence

ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCACCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACAAGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAAAAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGAAATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG

Coding sequence (CDS)

ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCACCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACAAGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAAAAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGAAATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG

Protein sequence

MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGLDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA

Homology

[Close]

BLAST of Clc02G12980 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL          
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSKWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            +MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399

[Close]

BLAST of Clc02G12980 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL          
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            +MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399

[Close]

BLAST of Clc02G12980 vs. NCBI nr
Match: XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL          
Sbjct: 1475 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 1534

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 1535 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 1594

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            +MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 1595 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 1654

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 1655 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 1714

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 1715 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 1774

[Close]

BLAST of Clc02G12980 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL          
Sbjct: 1959 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2018

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2019 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2078

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            +MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2079 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2138

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2139 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2198

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2199 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2258

[Close]

BLAST of Clc02G12980 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL          
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            +MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399

[Close]

BLAST of Clc02G12980 vs. ExPASy Swiss-Prot
Match: A4FUB7 (Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08
Identity = 56/228 (24.56%), Postives = 94/228 (41.23%), Query Frame = 0


Query: 50  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQ 109
           +D   +F++ +  +LCE F  KQ   S  +   N  AE+   T+   L K       DW 
Sbjct: 182 MDQRDEFIHQINVELCELFGTKQIVISHASQTINP-AESTPSTIKTFLSKHCVDYPNDWD 241

Query: 110 EKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRL 169
           + +  V +A+  TH  PT  TPY  ++     +P   E S +R    +  +        +
Sbjct: 242 DHLPAVSFAFNVTHLEPTKNTPYFQMFNRNPYMP---ESSDIREVDGDNTSMFAKILDAI 301

Query: 170 QELEALDEKRLEAQQALE---CYQARMSKAF----DKHVKPRSFQIGDLVLAVRRPIITT 229
           +E + + E +  +   +E   C++   SK       K   P   ++G  VL  R+     
Sbjct: 302 KEADKIMENKTTSVGQMENNNCHELNKSKIIVKKKPKQQNPFHLKVGHEVLRQRK----N 361

Query: 230 RHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRI-GPINGKFLKRF 270
                +F  +W GP V+  +  NG   + D  G R+  PI    LK +
Sbjct: 362 WWKDGRFRSEWVGPCVIDYITENGGAVLRDSSGARLKRPIKMSHLKPY 401

[Close]

BLAST of Clc02G12980 vs. ExPASy Swiss-Prot
Match: Q5RBK0 (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.3e-04
Identity = 49/230 (21.30%), Postives = 96/230 (41.74%), Query Frame = 0


Query: 50  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQ 109
           +D   +F+  +  +L   F  KQ   S  + + N   E+   T+   L K  +    +W 
Sbjct: 204 MDQRDEFIQQINIELYRLFGIKQIVISHTSGSVNP-TESTPNTIKAFLSKHCADHPNNWD 263

Query: 110 EKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP--------LEREISSLRMAIQEELTT 169
           + +  V +A+  TH  PT  TPY  ++     +P        ++ + +S+   I + +  
Sbjct: 264 DHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKE 323

Query: 170 EDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPII 229
            D    ++ E +     ++E     E  +++ + K   K + P   ++G  VL  R+   
Sbjct: 324 AD----KIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRK--- 383

Query: 230 TTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRI-GPINGKFLKRF 270
                  +F  +W GP V+  +  +G   + D  G+R+  PI    LK +
Sbjct: 384 -NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY 424

[Close]

BLAST of Clc02G12980 vs. ExPASy Swiss-Prot
Match: Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)

HSP 1 Score: 47.4 bits (111), Expect = 3.0e-04
Identity = 49/230 (21.30%), Postives = 95/230 (41.30%), Query Frame = 0


Query: 50  LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQ 109
           +D   +F+  +  +L   F  KQ   S  +   N   E+   T+   L K  +    +W 
Sbjct: 204 MDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNP-TESTPNTIKAFLSKHCADHPNNWD 263

Query: 110 EKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP--------LEREISSLRMAIQEELTT 169
           + +  V +A+  TH  PT  TPY  ++     +P        ++ + +S+   I + +  
Sbjct: 264 DHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKE 323

Query: 170 EDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPII 229
            D    ++ E +     ++E     E  +++ + K   K + P   ++G  VL  R+   
Sbjct: 324 AD----KIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRK--- 383

Query: 230 TTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRI-GPINGKFLKRF 270
                  +F  +W GP V+  +  +G   + D  G+R+  PI    LK +
Sbjct: 384 -NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY 424

[Close]

BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match: A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)

HSP 1 Score: 494.6 bits (1272), Expect = 2.7e-136
Identity = 245/332 (73.80%), Postives = 260/332 (78.31%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL          
Sbjct: 1987 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2046

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 2047 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2106

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            LMDKLCEKF FKQ+K SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 2107 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2166

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMAIQE LTTEDNA+LRLQELEALDEKR
Sbjct: 2167 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLQELEALDEKR 2226

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2227 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2286

[Close]

BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.5e-136
Identity = 244/332 (73.49%), Postives = 260/332 (78.31%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL          
Sbjct: 2057 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2116

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 2117 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2176

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            LMDKLCEKF FKQ+K SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 2177 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2236

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMAIQE LTTEDNA+LRL+ELEALDEKR
Sbjct: 2237 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLEELEALDEKR 2296

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2297 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2356

[Close]

BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match: A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.9e-134
Identity = 242/332 (72.89%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP E WGL          
Sbjct: 1411 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEVWGLDLVGPITPKS 1470

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 1471 SAGHSYILARTDYFSRWAEAVPLREAKKENIVNFVQTYIIYRYGIPHRIVTDNGRQFANT 1530

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 1531 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 1590

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLE+EI SLRM+IQE LTT+DNA+L LQELEALDEKR
Sbjct: 1591 RTTHRTPTGVTPYSLVYGVEAVLPLEKEIPSLRMSIQEGLTTKDNARLCLQELEALDEKR 1650

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 1651 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 1710

[Close]

BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match: A0A5A7UID6 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00130 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.9e-134
Identity = 243/332 (73.19%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1    MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
            MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL          
Sbjct: 1087 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVRPITPKS 1146

Query: 61   ---------------------------------------------------DNGRQFVNS 120
                                                               DNGRQF N+
Sbjct: 1147 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVRTHIIYRYGIPHRIVTDNGRQFANT 1206

Query: 121  LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
            LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 1207 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 1266

Query: 181  RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
            RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMAIQ+ LTTEDNA+LRLQELEALDEKR
Sbjct: 1267 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQKGLTTEDNARLRLQELEALDEKR 1326

Query: 241  LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
            LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRH GNKFTPKWDGPY+V
Sbjct: 1327 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHMGNKFTPKWDGPYIV 1386

[Close]

BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match: A0A5A7UZS6 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004880 PE=4 SV=1)

HSP 1 Score: 488.4 bits (1256), Expect = 1.9e-134
Identity = 242/332 (72.89%), Postives = 258/332 (77.71%), Query Frame = 0


Query: 1   MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
           MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP E WGL          
Sbjct: 306 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEVWGLDLVGPITPKS 365

Query: 61  ---------------------------------------------------DNGRQFVNS 120
                                                              DNGRQF N+
Sbjct: 366 SAGHSYILARTDYFSRWAEAVPLREAKKENIVNFVQTYIIYRYGIPHRIVTDNGRQFANT 425

Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
           LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 426 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 485

Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
           RTTHRTPTGVTPYSLVYGVEAVLPLE+EI SLRM+IQE LTT+DNA+L LQELEALDEKR
Sbjct: 486 RTTHRTPTGVTPYSLVYGVEAVLPLEKEIPSLRMSIQEGLTTKDNARLCLQELEALDEKR 545

Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
           LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 546 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 605

The following BLAST results are available for this feature:

BLAST of Clc02G12980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	5.5e-136	73.80	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	5.5e-136	73.80	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737372.1	5.5e-136	73.80	uncharacterized protein LOC116402244 [Cucumis sativus]	[more]
XP_031742199.1	5.5e-136	73.80	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	5.5e-136	73.80	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]

BLAST of Clc02G12980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUB7	3.5e-08	24.56	Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=...	[more]
Q5RBK0	2.3e-04	21.30	Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 P...	[more]
Q9NXP7	3.0e-04	21.30	Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P...	[more]

BLAST of Clc02G12980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D1E5	2.7e-136	73.80	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402...	[more]
A0A5A7TZU9	4.5e-136	73.49	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5D3BTY1	1.9e-134	72.89	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ...	[more]
A0A5A7UID6	1.9e-134	73.19	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00130...	[more]
A0A5A7UZS6	1.9e-134	72.89	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004880...	[more]

BLAST of Clc02G12980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 155..192
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 51..225
None	No IPR available	PANTHER	PTHR24559:SF342	SUBFAMILY NOT NAMED	coord: 51..225
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 10..186 e-value: 3.1E-27 score: 97.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 51..139 score: 10.349991
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 41..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G12980.1	Clc02G12980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding