Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCACCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGGTAGGACCTATAACACCTAAGTCATCGAGCGGACACTCTTATATTCTTGCTGGAACAGATTACTTTTCAAGTGGGCTGAAGTTGTGCCTTTAAGAGAAGCAAAAAAAGAAAAAATCGTAAGTTTTGTTCGTTCGCACATCATTTATCGATTCGGGATCCCTCATCGTATTGTCACAGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACAAGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAAAAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGAAATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG
mRNA sequence
ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCACCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACAAGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAAAAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGAAATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG
Coding sequence (CDS)
ATGGGCTATTATTGGCCCACAATGGTGCATGACTCCATGCAGTATGCAAAGCGATGCGAAGCTTGTCAATTCCATGCAAATTTTATACATCAGCCGCCAAAGCCTCTTCACCCGACAGTAGCTTCCTGGCCATTAGAAGCTTGGGGACTTGATAATGGAAGACAGTTTGTTAATAGTCTGATGGACAAGTTGTGCGAAAAGTTTAAATTTAAACAGTACAAGTATTCTATGTACAATGCTGCAGCAAATGGACTGGCAGAAGCATTCAATAAGACTTTATGTAATCTGCTAAAAAAGGTAGTCTCCAAGACGAAAAGAGATTGGCAGGAAAAGATCGAGGAAGTCCTATGGGCTTACCGAACTACCCATCGCACCCCCACAGGAGTCACACCATACTCTCTGGTTTATGGAGTGGAAGCCGTTCTCCCATTAGAGAGGGAAATTTCATCACTCAGAATGGCGATTCAAGAAGAATTAACTACTGAAGACAATGCCAAATTACGTCTTCAAGAGCTAGAAGCACTTGACGAGAAGAGACTCGAAGCTCAACAGGCATTGGAATGTTATCAAGCACGAATGTCTAAAGCTTTCGACAAACATGTGAAGCCTCGATCATTTCAGATTGGTGATTTAGTACTTGCTGTAAGAAGACCTATCATCACAACGAGACATACAGGGAATAAGTTCACACCTAAATGGGACGGACCCTATGTTGTTAAAGAAGTCTATACAAACGGAGCGTACAAGATCGTTGACCAAGATGGATTAAGAATCGGCCCAATCAATGGCAAGTTCCTTAAAAGATTTTATGCTTAG
Protein sequence
MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGLDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKRLEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRIGPINGKFLKRFYA
Homology
BLAST of Clc02G12980 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSKWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399
BLAST of Clc02G12980 vs. NCBI nr
Match:
XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])
HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399
BLAST of Clc02G12980 vs. NCBI nr
Match:
XP_031737372.1 (uncharacterized protein LOC116402244 [Cucumis sativus])
HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL
Sbjct: 1475 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 1534
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNG+QF NS
Sbjct: 1535 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 1594
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 1595 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 1654
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 1655 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 1714
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 1715 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 1774
BLAST of Clc02G12980 vs. NCBI nr
Match:
XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])
HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL
Sbjct: 1959 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2018
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNG+QF NS
Sbjct: 2019 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2078
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2079 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2138
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2139 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2198
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2199 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2258
BLAST of Clc02G12980 vs. NCBI nr
Match:
XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])
HSP 1 Score: 494.6 bits (1272), Expect = 5.5e-136
Identity = 245/332 (73.80%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWP M+ DS+ Y K+CE CQ+HANFIHQPP+PLHPTVASWP EAWGL
Sbjct: 2100 MGYYWPKMIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKS 2159
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNG+QF NS
Sbjct: 2160 SAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYRYGIPHRIVTDNGKQFSNS 2219
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
+MDKLCEKFKFKQYK SMYNAAANGLAEAFNKTLCNLLKK+VSK+KRDWQEKI E LWAY
Sbjct: 2220 MMDKLCEKFKFKQYKSSMYNAAANGLAEAFNKTLCNLLKKIVSKSKRDWQEKIGEALWAY 2279
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMA+QE LTTEDN KLRLQELEALDEKR
Sbjct: 2280 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAVQEGLTTEDNVKLRLQELEALDEKR 2339
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDKHVKPRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2340 LEAQQALECYQARMSKAFDKHVKPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2399
BLAST of Clc02G12980 vs. ExPASy Swiss-Prot
Match:
A4FUB7 (Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=2 SV=1)
HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08
Identity = 56/228 (24.56%), Postives = 94/228 (41.23%), Query Frame = 0
Query: 50 LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQ 109
+D +F++ + +LCE F KQ S + N AE+ T+ L K DW
Sbjct: 182 MDQRDEFIHQINVELCELFGTKQIVISHASQTINP-AESTPSTIKTFLSKHCVDYPNDWD 241
Query: 110 EKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRL 169
+ + V +A+ TH PT TPY ++ +P E S +R + + +
Sbjct: 242 DHLPAVSFAFNVTHLEPTKNTPYFQMFNRNPYMP---ESSDIREVDGDNTSMFAKILDAI 301
Query: 170 QELEALDEKRLEAQQALE---CYQARMSKAF----DKHVKPRSFQIGDLVLAVRRPIITT 229
+E + + E + + +E C++ SK K P ++G VL R+
Sbjct: 302 KEADKIMENKTTSVGQMENNNCHELNKSKIIVKKKPKQQNPFHLKVGHEVLRQRK----N 361
Query: 230 RHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRI-GPINGKFLKRF 270
+F +W GP V+ + NG + D G R+ PI LK +
Sbjct: 362 WWKDGRFRSEWVGPCVIDYITENGGAVLRDSSGARLKRPIKMSHLKPY 401
BLAST of Clc02G12980 vs. ExPASy Swiss-Prot
Match:
Q5RBK0 (Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 PE=2 SV=1)
HSP 1 Score: 47.8 bits (112), Expect = 2.3e-04
Identity = 49/230 (21.30%), Postives = 96/230 (41.74%), Query Frame = 0
Query: 50 LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQ 109
+D +F+ + +L F KQ S + + N E+ T+ L K + +W
Sbjct: 204 MDQRDEFIQQINIELYRLFGIKQIVISHTSGSVNP-TESTPNTIKAFLSKHCADHPNNWD 263
Query: 110 EKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP--------LEREISSLRMAIQEELTT 169
+ + V +A+ TH PT TPY ++ +P ++ + +S+ I + +
Sbjct: 264 DHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKE 323
Query: 170 EDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPII 229
D ++ E + ++E E +++ + K K + P ++G VL R+
Sbjct: 324 AD----KIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRK--- 383
Query: 230 TTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRI-GPINGKFLKRF 270
+F +W GP V+ + +G + D G+R+ PI LK +
Sbjct: 384 -NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY 424
BLAST of Clc02G12980 vs. ExPASy Swiss-Prot
Match:
Q9NXP7 (Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 PE=1 SV=3)
HSP 1 Score: 47.4 bits (111), Expect = 3.0e-04
Identity = 49/230 (21.30%), Postives = 95/230 (41.30%), Query Frame = 0
Query: 50 LDNGRQFVNSLMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQ 109
+D +F+ + +L F KQ S + N E+ T+ L K + +W
Sbjct: 204 MDQRDEFIQQINIELYRLFGIKQIVISHTSGTVNP-TESTPNTIKAFLSKHCADHPNNWD 263
Query: 110 EKIEEVLWAYRTTHRTPTGVTPYSLVYGVEAVLP--------LEREISSLRMAIQEELTT 169
+ + V +A+ TH PT TPY ++ +P ++ + +S+ I + +
Sbjct: 264 DHLSAVSFAFNVTHLEPTKNTPYFQMFSRNPYMPETSDSLHEVDGDNTSMFAKILDAIKE 323
Query: 170 EDNAKLRLQELEALDEKRLEAQQALECYQAR-MSKAFDKHVKPRSFQIGDLVLAVRRPII 229
D ++ E + ++E E +++ + K K + P ++G VL R+
Sbjct: 324 AD----KIMENKTTSLGQMENNNLDELNKSKIIVKKKPKQLNPFHLKVGHEVLRQRK--- 383
Query: 230 TTRHTGNKFTPKWDGPYVVKEVYTNGAYKIVDQDGLRI-GPINGKFLKRF 270
+F +W GP V+ + +G + D G+R+ PI LK +
Sbjct: 384 -NWWKDGRFQSEWVGPCVIDYITESGCAVLRDNTGVRLKRPIKMSHLKPY 424
BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match:
A0A5D3D1E5 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004020 PE=4 SV=1)
HSP 1 Score: 494.6 bits (1272), Expect = 2.7e-136
Identity = 245/332 (73.80%), Postives = 260/332 (78.31%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL
Sbjct: 1987 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2046
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNGRQF N+
Sbjct: 2047 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2106
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
LMDKLCEKF FKQ+K SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 2107 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2166
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMAIQE LTTEDNA+LRLQELEALDEKR
Sbjct: 2167 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLQELEALDEKR 2226
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2227 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2286
BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match:
A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)
HSP 1 Score: 493.8 bits (1270), Expect = 4.5e-136
Identity = 244/332 (73.49%), Postives = 260/332 (78.31%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL
Sbjct: 2057 MGYYWPTMIHDSMHFAKHCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVGPITPKS 2116
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNGRQF N+
Sbjct: 2117 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVQTHIIYRYGIPHRIVTDNGRQFANT 2176
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
LMDKLCEKF FKQ+K SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 2177 LMDKLCEKFNFKQFKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 2236
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMAIQE LTTEDNA+LRL+ELEALDEKR
Sbjct: 2237 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQEGLTTEDNARLRLEELEALDEKR 2296
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 2297 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 2356
BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match:
A0A5D3BTY1 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 PE=4 SV=1)
HSP 1 Score: 488.4 bits (1256), Expect = 1.9e-134
Identity = 242/332 (72.89%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP E WGL
Sbjct: 1411 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEVWGLDLVGPITPKS 1470
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNGRQF N+
Sbjct: 1471 SAGHSYILARTDYFSRWAEAVPLREAKKENIVNFVQTYIIYRYGIPHRIVTDNGRQFANT 1530
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 1531 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 1590
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLE+EI SLRM+IQE LTT+DNA+L LQELEALDEKR
Sbjct: 1591 RTTHRTPTGVTPYSLVYGVEAVLPLEKEIPSLRMSIQEGLTTKDNARLCLQELEALDEKR 1650
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 1651 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 1710
BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match:
A0A5A7UID6 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00130 PE=4 SV=1)
HSP 1 Score: 488.4 bits (1256), Expect = 1.9e-134
Identity = 243/332 (73.19%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP EAWGL
Sbjct: 1087 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEAWGLDLVRPITPKS 1146
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNGRQF N+
Sbjct: 1147 TAGHSYILAGTDYFSKWAEAVPLREAKKENIVNFVRTHIIYRYGIPHRIVTDNGRQFANT 1206
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 1207 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 1266
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLEREI SLRMAIQ+ LTTEDNA+LRLQELEALDEKR
Sbjct: 1267 RTTHRTPTGVTPYSLVYGVEAVLPLEREIPSLRMAIQKGLTTEDNARLRLQELEALDEKR 1326
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRH GNKFTPKWDGPY+V
Sbjct: 1327 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHMGNKFTPKWDGPYIV 1386
BLAST of Clc02G12980 vs. ExPASy TrEMBL
Match:
A0A5A7UZS6 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004880 PE=4 SV=1)
HSP 1 Score: 488.4 bits (1256), Expect = 1.9e-134
Identity = 242/332 (72.89%), Postives = 258/332 (77.71%), Query Frame = 0
Query: 1 MGYYWPTMVHDSMQYAKRCEACQFHANFIHQPPKPLHPTVASWPLEAWGL---------- 60
MGYYWPTM+HDSM +AK CEACQFHANFIHQPP+PLHPT+ASWP E WGL
Sbjct: 306 MGYYWPTMIHDSMHFAKYCEACQFHANFIHQPPEPLHPTIASWPFEVWGLDLVGPITPKS 365
Query: 61 ---------------------------------------------------DNGRQFVNS 120
DNGRQF N+
Sbjct: 366 SAGHSYILARTDYFSRWAEAVPLREAKKENIVNFVQTYIIYRYGIPHRIVTDNGRQFANT 425
Query: 121 LMDKLCEKFKFKQYKYSMYNAAANGLAEAFNKTLCNLLKKVVSKTKRDWQEKIEEVLWAY 180
LMDKLCEKF FKQYK SMYNAAANGLAEAFNKTLC+LLKKVVSKTKRDWQEKI E LWAY
Sbjct: 426 LMDKLCEKFNFKQYKSSMYNAAANGLAEAFNKTLCSLLKKVVSKTKRDWQEKIGEALWAY 485
Query: 181 RTTHRTPTGVTPYSLVYGVEAVLPLEREISSLRMAIQEELTTEDNAKLRLQELEALDEKR 240
RTTHRTPTGVTPYSLVYGVEAVLPLE+EI SLRM+IQE LTT+DNA+L LQELEALDEKR
Sbjct: 486 RTTHRTPTGVTPYSLVYGVEAVLPLEKEIPSLRMSIQEGLTTKDNARLCLQELEALDEKR 545
Query: 241 LEAQQALECYQARMSKAFDKHVKPRSFQIGDLVLAVRRPIITTRHTGNKFTPKWDGPYVV 272
LEAQQALECYQARMSKAFDK V+PRSFQ+GDLVLAVRRPIITTRHTGNKFTPKWDGPY+V
Sbjct: 546 LEAQQALECYQARMSKAFDKQVRPRSFQVGDLVLAVRRPIITTRHTGNKFTPKWDGPYIV 605
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
A4FUB7 | 3.5e-08 | 24.56 | Gypsy retrotransposon integrase-like protein 1 OS=Bos taurus OX=9913 GN=GIN1 PE=... | [more] |
Q5RBK0 | 2.3e-04 | 21.30 | Gypsy retrotransposon integrase-like protein 1 OS=Pongo abelii OX=9601 GN=GIN1 P... | [more] |
Q9NXP7 | 3.0e-04 | 21.30 | Gypsy retrotransposon integrase-like protein 1 OS=Homo sapiens OX=9606 GN=GIN1 P... | [more] |
Match Name | E-value | Identity | Description | |
A0A5D3D1E5 | 2.7e-136 | 73.80 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00402... | [more] |
A0A5A7TZU9 | 4.5e-136 | 73.49 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940... | [more] |
A0A5D3BTY1 | 1.9e-134 | 72.89 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00630 ... | [more] |
A0A5A7UID6 | 1.9e-134 | 73.19 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00130... | [more] |
A0A5A7UZS6 | 1.9e-134 | 72.89 | Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004880... | [more] |
Match Name | E-value | Identity | Description | |