Clc02G12880 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G12880
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cysteine-rich and transmembrane domain-containing protein A-like
Location	ClcChr02: 24816701 .. 24819135 (+)
RNA-Seq Expression	Clc02G12880
Synteny	Clc02G12880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCAATCTTTCTTCTTCTTCTTTCCAAATTCAAACTAATTTCCCCTCCCCTTACCATGAGTTACTACGACCACCAACAGCCCCCTGTTGGGGCTCCGCCGCCGCAAGGTCAGCCCTACAATCTCTCCTCTCTTCAACACATTTTAATTATATTTGGTTGTTGATTCATTCATTCATTCATTCATTCATACTTCTTGTAGGGTTCCCTCCCAAGGACGCTTACCCTCCGCCGGGGTACCCTGTTCAAGGTTACCCTGCAGCTCAAGGCTACCCTCCTCCACCCCCGCCGCCGCCGGGTTATGGCCCACAGTACGCTCAGCCTCCTCCCAAGAATGAAACAACCGGTTGCCTTGAAGGATGGTTAGTCACTTCCCTCTTTCACTTAATTCCCCACAATTGGAAAATGGCCCTATCACTGAGATTCTCGAATGTGTTGGACTTTCATGGTTAAATCAACATCAAGATTCAACATATTTTTCGATCATATTTAATTTTTCGCAAAATTTAAAAATCATAGTACAATCACCTGAGATCCGTCTGAAAAATGGATCATTTGAAATTTCAGTTAGTTCTGATAAGAGTGAGAGATTTCAAAAATTACGGAGAGTTTAATATATGATTTGATAAAGATGGAATTTGGAGAAAATTTGAACAAATATAAGATTTGGAAAATAATTATATTAATATTTAAAAAAATTAGTAGCATCTTAATGTTAATCCTTTGCGATATTTCTCCGAGAAAGTCCAAAAAAATAATTCATAAAACAAAAGGTTATTTTATTATTATTTTTTTTTACCAAATCTTAGTGTCGATCTCAGCCGAAATGGACCGACAAAACCTATTTTAACAAATTTTCTAAAAGAGTATTAGTTCTAATAGATGAAAATTTAATGAGGTTATTTTTTACCATTTTCTCTTAATCTAATTTTTTCTTCAACCAGTCAAATTAGTAATTACCCTTTCTATTTAAATTTAGGTTAAAAAGCGGTTAGTGGTCTTTAGCTTCCACATCAGAAAAGTAAGCATTAAGTTCATCAAGTTTAGTGGGTAATGATTTAATTTTGAATTAAATGATCAATTACTAATTGGTAACAAAGTAAGCACTTTCTTTAAACTATTGGTAAGAACCAGAGTCAACGTATTTATTTATTTATTATTATTATTATTATTATTTTGAGTTGGGTGTATTTAAATAAAATGCAACAAATATGGAGGGAAGATAAGATACGTAACATGCTAAACCACAATAAAAATTGACAACGGAATTAAAAATTAGGAAAGATAATATATTTTCTTACCTGAATTTTAGGTTTAGTTTTTATTTAGTATCTAAATTTTCAAATATTACACTTTTAATTTTAAAGTTTTGAATTTGATTTCAATTTACTCTCTAAATTTAAAAATGTTACAAATTTACCTTTTAAATTTGAGTTTTATTTCTATTTAGTTTTTAGATTTCAAAATTGACAATTTTAACCACAATATATCATTAAATACACACGTTTGGTCTAAAGTGTTAAAGTCTATTAATTAATTTAAAGAACTAAAACAATTATAATTAATTAGTCCCACTATTTCTTCATCATTAATCATTGAAATTAATTTTAAAATTTACTTCATAATTATTTTAAATAATTAATAGATACTAACACCAAATATTGAAGTGAGCATTTAGTGAAAAATTGAGGTTAGAACTTAAGACTATAAATCTTGAAACTCAATGACCAAATTTTAGACAAAAACTCGGTTATCAAGGTTAAAACTGTTACATTTTTTAAAACTAGGGATCAAAACTTAATAACTAAAAGTATAACATTTTAAAAATTAGCTAGGGATCAAAGTGAAAAGGGTAAAAAAAAAAATATATTTTTCACTAAAAACTAAAAACAGGTTGGGGTTGTATCAATTTCAACCCCAAACTAACAATTATATCAATTGAAACTCAGAACTTTTGTAAATGTACCAATTTACACTTTTTTATTACATTTTGCTTAGGAAAAACTCGTGTGAAACTTAAAATTATATCAATTAAACCCCTAAACATTCATAAATGAATCAATTTAGACTCTTAGTCAAAATATCTATTGGAAACTAACATACGAAGAAGTCTACATGTATTTAGTAAACTAATACTAAATTATCATTTCCATTATTTTTTTGTATTGATATTTGATTTATAATTTATTATAATATAATTATTTAAAAATATATATGATTTAAACTTTTTGTGTAAGAATAAATCCTAATGAAGATTTTTATATAATGCGTTTTTATTATTGGAAAAGGAGTGATTAATTGGTAAAACGTATTGTGTGATTATTGTTATGCAGTTTAGCAGCACTTTGTTGTTGCTGTTTGTTGGATGCTTGCTTCTGACAACAAGGATTGGACTATGATCAGTGTACTTATTATTATTCCAATATCATTGTATTAT

mRNA sequence

TTTCAATCTTTCTTCTTCTTCTTTCCAAATTCAAACTAATTTCCCCTCCCCTTACCATGAGTTACTACGACCACCAACAGCCCCCTGTTGGGGCTCCGCCGCCGCAAGGGTTCCCTCCCAAGGACGCTTACCCTCCGCCGGGGTACCCTGTTCAAGGTTACCCTGCAGCTCAAGGCTACCCTCCTCCACCCCCGCCGCCGCCGGGTTATGGCCCACAGTACGCTCAGCCTCCTCCCAAGAATGAAACAACCGGTTGCCTTGAAGGATGGTTAGTCACTTCCCTCTTTCACTTAATTCCCCACAATTGGAAAATGGCCCTATCACTGAGATTCTCGAATTTTAGCAGCACTTTGTTGTTGCTGTTTGTTGGATGCTTGCTTCTGACAACAAGGATTGGACTATGATCAGTGTACTTATTATTATTCCAATATCATTGTATTAT

Coding sequence (CDS)

ATGAGTTACTACGACCACCAACAGCCCCCTGTTGGGGCTCCGCCGCCGCAAGGGTTCCCTCCCAAGGACGCTTACCCTCCGCCGGGGTACCCTGTTCAAGGTTACCCTGCAGCTCAAGGCTACCCTCCTCCACCCCCGCCGCCGCCGGGTTATGGCCCACAGTACGCTCAGCCTCCTCCCAAGAATGAAACAACCGGTTGCCTTGAAGGATGGTTAGTCACTTCCCTCTTTCACTTAATTCCCCACAATTGGAAAATGGCCCTATCACTGAGATTCTCGAATTTTAGCAGCACTTTGTTGTTGCTGTTTGTTGGATGCTTGCTTCTGACAACAAGGATTGGACTATGA

Protein sequence

MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYGPQYAQPPPKNETTGCLEGWLVTSLFHLIPHNWKMALSLRFSNFSSTLLLLFVGCLLLTTRIGL

Homology

[Close]

BLAST of Clc02G12880 vs. NCBI nr
Match: XP_011649307.1 (cysteine-rich and transmembrane domain-containing protein WIH1 [Cucumis sativus] >KGN61955.1 hypothetical protein Csa_005974 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYGPQYAQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGY PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEGWL 73
          KNETTGCLEG L
Sbjct: 61 KNETTGCLEGCL 72

[Close]

BLAST of Clc02G12880 vs. NCBI nr
Match: XP_008457737.2 (PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-30
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYGPQYAQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKD+YPPPGYPVQGYPAAQGYPPPPPPPPGY PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEGWL 73
          KNE+TGCLEG L
Sbjct: 61 KNESTGCLEGCL 72

[Close]

BLAST of Clc02G12880 vs. NCBI nr
Match: XP_038901964.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like [Benincasa hispida])

HSP 1 Score: 137.9 bits (346), Expect = 5.5e-29
Identity = 69/73 (94.52%), Postives = 69/73 (94.52%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYP-PPPPPPPGYGPQYAQPP 60
          MSYYDHQQPPVGAPPPQGFP KDAYPPPGYPVQGYPAAQGYP PPPPPPPGY PQYAQPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPSKDAYPPPGYPVQGYPAAQGYPQPPPPPPPGYAPQYAQPP 60

Query: 61 PKNETTGCLEGWL 73
          PKNETTGCLEG L
Sbjct: 61 PKNETTGCLEGCL 73

[Close]

BLAST of Clc02G12880 vs. NCBI nr
Match: KAG7035191.1 (hypothetical protein SDJN02_01986, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 5.7e-26
Identity = 68/92 (73.91%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYGPQYAQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P Y P   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPPKNETTGCLEGWLVTS--LFHLIPHNWKMA 88
          PPPK++ TGCLEGW VTS  L   +  +W +A
Sbjct: 61 PPPKDK-TGCLEGWSVTSSVLHFAVAVSWMLA 91

[Close]

BLAST of Clc02G12880 vs. NCBI nr
Match: XP_022947084.1 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.5 bits (319), Expect = 7.5e-26
Identity = 67/87 (77.01%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYGPQYAQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P Y P   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPPKNETTGCLEGWLVTSLFHLIPHNW 85
          PPPK++ TGCLEGW VTS   +I  N+
Sbjct: 61 PPPKDK-TGCLEGWSVTSSVLVIQWNF 86

[Close]

BLAST of Clc02G12880 vs. ExPASy Swiss-Prot
Match: Q9FJW3 (Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis thaliana OX=3702 GN=WIH1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.0e-10
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 4  YDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPA---AQGYPPPPPPPPGYGPQYAQPPP 63
          Y  +Q PVGAPPPQG+PPKD YPP GYP  GYP    AQGYP    PP    PQY+Q P 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP----PQYSQAPQ 61

Query: 64 KNETTGCLEGWL 73
          + +  G LEG L
Sbjct: 62 QKQNAGMLEGCL 69

[Close]

BLAST of Clc02G12880 vs. ExPASy Swiss-Prot
Match: Q8S8M0 (Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis thaliana OX=3702 GN=WIH2 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-08
Identity = 47/88 (53.41%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYPAAQGYPPPPPP--------- 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP  QGYPP   P         
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYP-QQGYPPQGYPQQGYPQQGY 60

Query: 61 PPGYGPQYAQPP---PKNETTGCLEGWL 73
          PP Y PQY  PP    +  + G LEG L
Sbjct: 61 PPPYAPQYPPPPQHQQQQSSPGFLEGCL 85

[Close]

BLAST of Clc02G12880 vs. ExPASy Swiss-Prot
Match: Q8LCL8 (Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thaliana OX=3702 GN=At3g57160 PE=3 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 3.8e-04
Identity = 42/84 (50.00%), Postives = 46/84 (54.76%), Query Frame = 0


Query: 7  QQPP-VGAPPPQGF----PPKDAYPPPG--YPVQGYPAAQGYPPPPPPPPGYGPQ----- 66
          QQPP VG PP   +    PPKDAYPPPG  YP QGYP  QGYP    PP GY PQ     
Sbjct: 3  QQPPAVGVPPSHAYPAEGPPKDAYPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPEQ 62

Query: 67 -YAQ---PPPKNE----TTGCLEG 71
           Y Q   PP + +    + G LEG
Sbjct: 63 GYPQQGYPPQQQQQQKHSPGMLEG 86

[Close]

BLAST of Clc02G12880 vs. ExPASy Swiss-Prot
Match: P31356 (Rhodopsin OS=Todarodes pacificus OX=6637 GN=RHO PE=1 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 8.4e-04
Identity = 33/52 (63.46%), Postives = 35/52 (67.31%), Query Frame = 0


Query: 9   PPVG-APPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYGPQYAQPP 60
           PP G APPPQG+PP+  YPP GYP QGYP  QGYPPPP   P  G   A PP
Sbjct: 389 PPQGYAPPPQGYPPQ-GYPPQGYPPQGYP-PQGYPPPPQGAPPQGAPPAAPP 438

[Close]

BLAST of Clc02G12880 vs. ExPASy TrEMBL
Match: A0A0A0LJA6 (CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271480 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYGPQYAQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGY PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEGWL 73
          KNETTGCLEG L
Sbjct: 61 KNETTGCLEGCL 72

[Close]

BLAST of Clc02G12880 vs. ExPASy TrEMBL
Match: A0A1S3C5S7 (cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo OX=3656 GN=LOC103497359 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPPPGYGPQYAQPPP 60
          MSYYDHQQPPVGAPPPQGFPPKD+YPPPGYPVQGYPAAQGYPPPPPPPPGY PQY+QPPP
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDSYPPPGYPVQGYPAAQGYPPPPPPPPGYAPQYSQPPP 60

Query: 61 KNETTGCLEGWL 73
          KNE+TGCLEG L
Sbjct: 61 KNESTGCLEGCL 72

[Close]

BLAST of Clc02G12880 vs. ExPASy TrEMBL
Match: A0A6J1G5R9 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451063 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 67/87 (77.01%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYGPQYAQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P Y P   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPPKNETTGCLEGWLVTSLFHLIPHNW 85
          PPPK++ TGCLEGW VTS   +I  N+
Sbjct: 61 PPPKDK-TGCLEGWSVTSSVLVIQWNF 86

[Close]

BLAST of Clc02G12880 vs. ExPASy TrEMBL
Match: A0A6J1G5U7 (cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111451063 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-23
Identity = 62/75 (82.67%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYGPQYAQ 60
          MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYP AQGYPPPPPPP   P Y P   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPTAQGYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPPKNETTGCLEGWL 73
          PPPK++ TGCLEG L
Sbjct: 61 PPPKDK-TGCLEGCL 74

[Close]

BLAST of Clc02G12880 vs. ExPASy TrEMBL
Match: A0A6J1L666 (cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita maxima OX=3661 GN=LOC111499542 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.0e-21
Identity = 59/75 (78.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPAAQGYPPPPPPP---PGYGPQYAQ 60
          MSYYDHQQPPVGAPPPQG PPKDAYPPPGYPVQGYP AQ YPPPPPPP   P Y P   Q
Sbjct: 1  MSYYDHQQPPVGAPPPQGLPPKDAYPPPGYPVQGYPTAQAYPPPPPPPVYAPQYAPTTQQ 60

Query: 61 PPPKNETTGCLEGWL 73
          P PK++ TGCLEG L
Sbjct: 61 PTPKDK-TGCLEGCL 74

[Close]

BLAST of Clc02G12880 vs. TAIR 10
Match: AT5G67600.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49845.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-11
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 4  YDHQQPPVGAPPPQGFPPKDAYPPPGYPVQGYPA---AQGYPPPPPPPPGYGPQYAQPPP 63
          Y  +Q PVGAPPPQG+PPKD YPP GYP  GYP    AQGYP    PP    PQY+Q P 
Sbjct: 2  YHQEQHPVGAPPPQGYPPKDGYPPAGYPPAGYPPPGYAQGYPAQGYPP----PQYSQAPQ 61

Query: 64 KNETTGCLEGWL 73
          + +  G LEG L
Sbjct: 62 QKQNAGMLEGCL 69

[Close]

BLAST of Clc02G12880 vs. TAIR 10
Match: AT2G41420.1 (proline-rich family protein )

HSP 1 Score: 60.8 bits (146), Expect = 8.0e-10
Identity = 47/88 (53.41%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFP----PKDAYPPPGYPVQGYPAAQGYPPPPPP--------- 60
          MS Y+  QPPVG PPPQG+P    PKDAYPP GYP QGYP  QGYPP   P         
Sbjct: 1  MSQYN--QPPVGVPPPQGYPPEGYPKDAYPPQGYPPQGYP-QQGYPPQGYPQQGYPQQGY 60

Query: 61 PPGYGPQYAQPP---PKNETTGCLEGWL 73
          PP Y PQY  PP    +  + G LEG L
Sbjct: 61 PPPYAPQYPPPPQHQQQQSSPGFLEGCL 85

[Close]

BLAST of Clc02G12880 vs. TAIR 10
Match: AT3G49845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.9e-07
Identity = 40/71 (56.34%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 1  MSYYDHQQPPVGAPPPQGFPPKDAYPPPGY-PVQGYPAAQ----GYPPP--PPPPPGYG- 60
          MSY D Q  PV APPPQG+PPK+ YPP GY P  GYP  Q    GYPP   PPP  GYG 
Sbjct: 1  MSYQDPQH-PVSAPPPQGYPPKEGYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQ 60

Query: 61 --PQYAQPPPK 62
            P    PPP+
Sbjct: 61 GYPAQGYPPPQ 70

The following BLAST results are available for this feature:

BLAST of Clc02G12880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649307.1	5.9e-31	95.83	cysteine-rich and transmembrane domain-containing protein WIH1 [Cucumis sativus]...	[more]
XP_008457737.2	3.8e-30	93.06	PREDICTED: cysteine-rich and transmembrane domain-containing protein A-like [Cuc...	[more]
XP_038901964.1	5.5e-29	94.52	cysteine-rich and transmembrane domain-containing protein WIH1-like [Benincasa h...	[more]
KAG7035191.1	5.7e-26	73.91	hypothetical protein SDJN02_01986, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022947084.1	7.5e-26	77.01	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 [...	[more]

BLAST of Clc02G12880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJW3	6.0e-10	56.94	Cysteine-rich and transmembrane domain-containing protein WIH1 OS=Arabidopsis th...	[more]
Q8S8M0	1.1e-08	53.41	Cysteine-rich and transmembrane domain-containing protein WIH2 OS=Arabidopsis th...	[more]
Q8LCL8	3.8e-04	50.00	Cysteine-rich and transmembrane domain-containing protein B OS=Arabidopsis thali...	[more]
P31356	8.4e-04	63.46	Rhodopsin OS=Todarodes pacificus OX=6637 GN=RHO PE=1 SV=2	[more]

BLAST of Clc02G12880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJA6	2.9e-31	95.83	CYSTM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271480 PE=3 ...	[more]
A0A1S3C5S7	1.9e-30	93.06	cysteine-rich and transmembrane domain-containing protein A-like OS=Cucumis melo...	[more]
A0A6J1G5R9	3.6e-26	77.01	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X1 O...	[more]
A0A6J1G5U7	2.9e-23	82.67	cysteine-rich and transmembrane domain-containing protein WIH1-like isoform X2 O...	[more]
A0A6J1L666	6.0e-21	78.67	cysteine-rich and transmembrane domain-containing protein WIH1-like OS=Cucurbita...	[more]

BLAST of Clc02G12880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G67600.1	4.3e-11	56.94	unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures;...	[more]
AT2G41420.1	8.0e-10	53.41	proline-rich family protein	[more]
AT3G49845.1	2.9e-07	56.34	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	PANTHER	PTHR31568:SF102	SUBFAMILY NOT NAMED	coord: 1..78
IPR044850	Cysteine-rich and transmembrane domain-containing protein WIH1/2-like	PANTHER	PTHR31568	RCG49325, ISOFORM CRA_A	coord: 1..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G12880.2	Clc02G12880.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane