Clc02G12530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G12530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Actin-depolymerizing factor
Location	ClcChr02: 24330144 .. 24331123 (+)
RNA-Seq Expression	Clc02G12530
Synteny	Clc02G12530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGTACTCCATTTTCAGAGCTTAGAGTTTTTCAAACACAGTCCCCCACGAGCACTAACAATGGCGATGGCTTTCAAGATGGTAACTAACTTAACCACTTCACTCTTACGATCTCTTCTGTTTTTTTCTTTCTTGATTCTGATTCTGATTCCATTTCTTGACCCCGAATCTCAGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCCTTCATGGAGATGAAATGGAAGAAGGTTCATAGGTATATTGTGTTTAAGATCGATGAAGGATCCAGATTAGTCACCGTCGACAAGGTCGGCGGTCCGGCCGAAAGCTACGATGATCTCACCGCCTCATTGCCGAACGACGACTGTCGATACGCGGTCTTCGATTTCGACTTCGTTACTGTTGATAATTGCCGGAAGAGCAAGATCTTCTTCATCGCCTGGTATCTTCCGCGATTCTTTGCTGTTTTTCCTCGATCGCATCTGCTCTTCATTCCTAGAATAATCGTTCAATTCTCTCTGATTCCTCAAATTCATAATCTCTAATTTCTGTTACAGTGTCTGATTAATTATATGAGTTCTGATCGTAAGCGGAATTCGAATTTGTCTAGAGAAACCCTAACCGATTATTTGAATCGAATACTGTAAATTGAACGGATCTGAATCTGAAATTGAAATTGAAATTGAAACTGTAACCGATGGGTTGGTTTGGAACAGGTCGCCCACCGAATCAAGAATCAGAGCTAAAATTCTATACGCGACTTCAAAGGATGGGCTGAGGAGAGTGCTGGAAGGAATTCATTACGAAGTTCAAGCAACGGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAAATAAATAATTAGAAGGGAAAAAAAGGGAAAAGGCTAATCAATCTTTAGGTATCTTTTACTTTGGATTTTTAATAATGAATGACCACTCCAACTATATGTTATCTGCTTTTCCCTTCTCGGT

mRNA sequence

ACGGTACTCCATTTTCAGAGCTTAGAGTTTTTCAAACACAGTCCCCCACGAGCACTAACAATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCCTTCATGGAGATGAAATGGAAGAAGGTTCATAGGTATATTGTGTTTAAGATCGATGAAGGATCCAGATTAGTCACCGTCGACAAGGTCGGCGGTCCGGCCGAAAGCTACGATGATCTCACCGCCTCATTGCCGAACGACGACTGTCGATACGCGGTCTTCGATTTCGACTTCGTTACTGTTGATAATTGCCGGAAGAGCAAGATCTTCTTCATCGCCTGGTATCTTCCGCGATTCTTTGCTGTTTTTCCTCGATCGCATCTGCTCTTCATTCCTAGAATAATCTGTCTGATTAATTATATGAGTTCTGATCGTAAGCGGAATTCGAATTTGTCTAGAGAAACCCTAACCGATTATTTGAATCGAATACTGTCGCCCACCGAATCAAGAATCAGAGCTAAAATTCTATACGCGACTTCAAAGGATGGGCTGAGGAGAGTGCTGGAAGGAATTCATTACGAAGTTCAAGCAACGGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAAATAAATAATTAGAAGGGAAAAAAAGGGAAAAGGCTAATCAATCTTTAGGTATCTTTTACTTTGGATTTTTAATAATGAATGACCACTCCAACTATATGTTATCTGCTTTTCCCTTCTCGGT

Coding sequence (CDS)

ATGGCGATGGCTTTCAAGATGGCAACCACTGGAATGTGGGTGAGCGATGAGTGCAAGAATTCCTTCATGGAGATGAAATGGAAGAAGGTTCATAGGTATATTGTGTTTAAGATCGATGAAGGATCCAGATTAGTCACCGTCGACAAGGTCGGCGGTCCGGCCGAAAGCTACGATGATCTCACCGCCTCATTGCCGAACGACGACTGTCGATACGCGGTCTTCGATTTCGACTTCGTTACTGTTGATAATTGCCGGAAGAGCAAGATCTTCTTCATCGCCTGGTATCTTCCGCGATTCTTTGCTGTTTTTCCTCGATCGCATCTGCTCTTCATTCCTAGAATAATCTGTCTGATTAATTATATGAGTTCTGATCGTAAGCGGAATTCGAATTTGTCTAGAGAAACCCTAACCGATTATTTGAATCGAATACTGTCGCCCACCGAATCAAGAATCAGAGCTAAAATTCTATACGCGACTTCAAAGGATGGGCTGAGGAGAGTGCTGGAAGGAATTCATTACGAAGTTCAAGCAACGGATCCAACTGAGATGGGGATCGATGTGATCAAGGACAGAGCCAAATAA

Protein sequence

MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDVIKDRAK

Homology

[Close]

BLAST of Clc02G12530 vs. NCBI nr
Match: XP_004147035.1 (actin-depolymerizing factor 5 [Cucumis sativus] >XP_008457680.1 PREDICTED: actin-depolymerizing factor 5-like [Cucumis melo] >KGN61924.1 hypothetical protein Csa_005919 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 5.4e-69
Identity = 143/193 (74.09%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMGIDVIKDRAK
Sbjct: 181 TEMGIDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. NCBI nr
Match: XP_038901914.1 (actin-depolymerizing factor 5-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.2e-68
Identity = 142/193 (73.58%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG+DVIKDRAK
Sbjct: 181 TEMGMDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. NCBI nr
Match: KAG6571025.1 (Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265.0 bits (676), Expect = 5.1e-67
Identity = 140/193 (72.54%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 624 MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 683

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 684 TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 743

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVLEGIHYEVQATDP
Sbjct: 744 ------------------------SPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDP 766

Query: 181 TEMGIDVIKDRAK 194
           TEMG+DVIKDRAK
Sbjct: 804 TEMGMDVIKDRAK 766

[Close]

BLAST of Clc02G12530 vs. NCBI nr
Match: XP_022943996.1 (actin-depolymerizing factor 5-like [Cucurbita moschata] >XP_022986745.1 actin-depolymerizing factor 5-like [Cucurbita maxima] >KAG7010856.1 Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 5.1e-67
Identity = 140/193 (72.54%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG+DVIKDRAK
Sbjct: 181 TEMGMDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. NCBI nr
Match: XP_023512924.1 (actin-depolymerizing factor 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 260.8 bits (665), Expect = 9.5e-66
Identity = 138/193 (71.50%), Postives = 140/193 (72.54%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGG AESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVLEGIHYE+QATDP
Sbjct: 121 ------------------------SPTASRIRAKILYATSKAGLRRVLEGIHYELQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG+DVIKDRAK
Sbjct: 181 TEMGMDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. ExPASy Swiss-Prot
Match: Q9ZNT3 (Actin-depolymerizing factor 5 OS=Arabidopsis thaliana OX=3702 GN=ADF5 PE=1 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-58
Identity = 122/193 (63.21%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGM V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL
Sbjct: 1   MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
             SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SP  S+IRAKILYATSKDGLRRVLEGIHYE+QATDP
Sbjct: 121 ------------------------SPEASKIRAKILYATSKDGLRRVLEGIHYELQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG D+I+DRAK
Sbjct: 181 TEMGFDIIQDRAK 143

[Close]

BLAST of Clc02G12530 vs. ExPASy Swiss-Prot
Match: O49606 (Actin-depolymerizing factor 9 OS=Arabidopsis thaliana OX=3702 GN=ADF9 PE=2 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 6.7e-54
Identity = 108/191 (56.54%), Postives = 123/191 (64.40%), Query Frame = 0


Query: 3   MAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTA 62
           MA K AT+GMW++D+CK SFMEMKWKKVHRY+V+K++E SR VTVDKVG   ESYDDL A
Sbjct: 1   MALKTATSGMWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAA 60

Query: 63  SLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMS 122
           SLP DDCRYAVFDFD+VTVDNCR SKIFFI W                            
Sbjct: 61  SLPEDDCRYAVFDFDYVTVDNCRMSKIFFITW---------------------------- 120

Query: 123 SDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTE 182
                                 SP  SRIR K++YATSK GLRRVL+G+HYE+QATDPTE
Sbjct: 121 ----------------------SPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTE 141

Query: 183 MGIDVIKDRAK 194
           MG D I+DRAK
Sbjct: 181 MGFDKIQDRAK 141

[Close]

BLAST of Clc02G12530 vs. ExPASy Swiss-Prot
Match: Q10P87 (Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF5 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-53
Identity = 111/193 (57.51%), Postives = 126/193 (65.28%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMA+KMAT GM V +EC+  FMEMKWKKVHR++V+KIDE SR V VDKVGGP E Y++L
Sbjct: 1   MAMAYKMATEGMNVKEECQRWFMEMKWKKVHRFVVYKIDERSRAVLVDKVGGPGEGYEEL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
            A+LP DDCRYAVFDFDFVTVDNC+KSKIFFIAW                          
Sbjct: 61  VAALPTDDCRYAVFDFDFVTVDNCQKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVL+G+HYEVQATD 
Sbjct: 121 ------------------------SPTASRIRAKILYATSKQGLRRVLDGVHYEVQATDS 143

Query: 181 TEMGIDVIKDRAK 194
           +EMG DVI+ RA+
Sbjct: 181 SEMGYDVIRGRAQ 143

[Close]

BLAST of Clc02G12530 vs. ExPASy Swiss-Prot
Match: Q8SAG3 (Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.0e-43
Identity = 89/185 (48.11%), Postives = 116/185 (62.70%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           A++GM V+D  KN+F+E+K KKVHRY++FKIDE  + V V+K GGPAES+D+  A+LP +
Sbjct: 8   ASSGMGVADHSKNTFLELKRKKVHRYVIFKIDEKKKEVVVEKTGGPAESFDEFAAALPEN 67

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKR 127
           DCRYAV+DFDFVT +NC+KSKIFFIAW                                 
Sbjct: 68  DCRYAVYDFDFVTSENCQKSKIFFIAW--------------------------------- 127

Query: 128 NSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDV 187
                            SP  SRIRAK+LYATSK+  RR L+G+HYE+QATDPTEM ++V
Sbjct: 128 -----------------SPDSSRIRAKMLYATSKERFRRELDGVHYEIQATDPTEMDLEV 142

Query: 188 IKDRA 193
           +++RA
Sbjct: 188 LRERA 142

[Close]

BLAST of Clc02G12530 vs. ExPASy Swiss-Prot
Match: Q9ZSK2 (Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 6.5e-41
Identity = 87/185 (47.03%), Postives = 112/185 (60.54%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           A +GM V+DE K +F+E++ KK HRY+VFKIDE  + V V+K G P ESYDD  ASLP++
Sbjct: 11  AISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN 70

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKR 127
           DCRYAV+DFDFVT +NC+KSKIFF AW                                 
Sbjct: 71  DCRYAVYDFDFVTSENCQKSKIFFFAW--------------------------------- 130

Query: 128 NSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDV 187
                            SP+ S IRAK+LY+TSKD L R L+GIHYE+QATDPTE+ ++V
Sbjct: 131 -----------------SPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEV 145

Query: 188 IKDRA 193
           +++RA
Sbjct: 191 LRERA 145

[Close]

BLAST of Clc02G12530 vs. ExPASy TrEMBL
Match: A0A0A0LLM1 (ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270170 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.6e-69
Identity = 143/193 (74.09%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMGIDVIKDRAK
Sbjct: 181 TEMGIDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. ExPASy TrEMBL
Match: A0A1S3C6R0 (actin-depolymerizing factor 5-like OS=Cucumis melo OX=3656 GN=LOC103497322 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.6e-69
Identity = 143/193 (74.09%), Postives = 143/193 (74.09%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMGIDVIKDRAK
Sbjct: 181 TEMGIDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. ExPASy TrEMBL
Match: A0A6J1JEW6 (actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111484412 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 140/193 (72.54%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG+DVIKDRAK
Sbjct: 181 TEMGMDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. ExPASy TrEMBL
Match: A0A6J1FT84 (actin-depolymerizing factor 5-like OS=Cucurbita moschata OX=3662 GN=LOC111448560 PE=3 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.4e-67
Identity = 140/193 (72.54%), Postives = 141/193 (73.06%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG+DVIKDRAK
Sbjct: 181 TEMGMDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. ExPASy TrEMBL
Match: A0A6J1I143 (actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469893 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 6.0e-66
Identity = 138/193 (71.50%), Postives = 139/193 (72.02%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGG AESYDDL
Sbjct: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGSAESYDDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
           TASLP DDCRYAVFDFDFVT+DNCRKSKIFFIAW                          
Sbjct: 61  TASLPTDDCRYAVFDFDFVTIDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SPT SRIRAKILYATSK GLRRVLEGIHYEVQATDP
Sbjct: 121 ------------------------SPTASRIRAKILYATSKAGLRRVLEGIHYEVQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMGIDVIKDRAK
Sbjct: 181 TEMGIDVIKDRAK 143

[Close]

BLAST of Clc02G12530 vs. TAIR 10
Match: AT2G16700.1 (actin depolymerizing factor 5 )

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-59
Identity = 122/193 (63.21%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 1   MAMAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDL 60
           MAMAFKMATTGM V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL
Sbjct: 1   MAMAFKMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDL 60

Query: 61  TASLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINY 120
             SLP DDCRYAVFDFDFVTVDNCRKSKIFFIAW                          
Sbjct: 61  EDSLPVDDCRYAVFDFDFVTVDNCRKSKIFFIAW-------------------------- 120

Query: 121 MSSDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDP 180
                                   SP  S+IRAKILYATSKDGLRRVLEGIHYE+QATDP
Sbjct: 121 ------------------------SPEASKIRAKILYATSKDGLRRVLEGIHYELQATDP 143

Query: 181 TEMGIDVIKDRAK 194
           TEMG D+I+DRAK
Sbjct: 181 TEMGFDIIQDRAK 143

[Close]

BLAST of Clc02G12530 vs. TAIR 10
Match: AT4G34970.1 (actin depolymerizing factor 9 )

HSP 1 Score: 211.8 bits (538), Expect = 4.7e-55
Identity = 108/191 (56.54%), Postives = 123/191 (64.40%), Query Frame = 0


Query: 3   MAFKMATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTA 62
           MA K AT+GMW++D+CK SFMEMKWKKVHRY+V+K++E SR VTVDKVG   ESYDDL A
Sbjct: 1   MALKTATSGMWMTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAA 60

Query: 63  SLPNDDCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMS 122
           SLP DDCRYAVFDFD+VTVDNCR SKIFFI W                            
Sbjct: 61  SLPEDDCRYAVFDFDYVTVDNCRMSKIFFITW---------------------------- 120

Query: 123 SDRKRNSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTE 182
                                 SP  SRIR K++YATSK GLRRVL+G+HYE+QATDPTE
Sbjct: 121 ----------------------SPEASRIREKMMYATSKSGLRRVLDGVHYELQATDPTE 141

Query: 183 MGIDVIKDRAK 194
           MG D I+DRAK
Sbjct: 181 MGFDKIQDRAK 141

[Close]

BLAST of Clc02G12530 vs. TAIR 10
Match: AT2G16700.2 (actin depolymerizing factor 5 )

HSP 1 Score: 206.1 bits (523), Expect = 2.6e-53
Identity = 111/182 (60.99%), Postives = 119/182 (65.38%), Query Frame = 0


Query: 12  MWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPNDDCRY 71
           M V+DEC +SFM+MKWKKVHRYIVFKI+E SR VTVDKVGG  ESY DL  SLP DDCRY
Sbjct: 1   MRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHDLEDSLPVDDCRY 60

Query: 72  AVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKRNSNL 131
           AVFDFDFVTVDNCRKSKIFFIAW                                     
Sbjct: 61  AVFDFDFVTVDNCRKSKIFFIAW------------------------------------- 120

Query: 132 SRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDVIKDR 191
                        SP  S+IRAKILYATSKDGLRRVLEGIHYE+QATDPTEMG D+I+DR
Sbjct: 121 -------------SPEASKIRAKILYATSKDGLRRVLEGIHYELQATDPTEMGFDIIQDR 132

Query: 192 AK 194
           AK
Sbjct: 181 AK 132

[Close]

BLAST of Clc02G12530 vs. TAIR 10
Match: AT2G31200.1 (actin depolymerizing factor 6 )

HSP 1 Score: 168.7 bits (426), Expect = 4.6e-42
Identity = 87/185 (47.03%), Postives = 112/185 (60.54%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           A +GM V+DE K +F+E++ KK HRY+VFKIDE  + V V+K G P ESYDD  ASLP++
Sbjct: 11  AISGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASLPDN 70

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKR 127
           DCRYAV+DFDFVT +NC+KSKIFF AW                                 
Sbjct: 71  DCRYAVYDFDFVTSENCQKSKIFFFAW--------------------------------- 130

Query: 128 NSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDV 187
                            SP+ S IRAK+LY+TSKD L R L+GIHYE+QATDPTE+ ++V
Sbjct: 131 -----------------SPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQATDPTEVDLEV 145

Query: 188 IKDRA 193
           +++RA
Sbjct: 191 LRERA 145

[Close]

BLAST of Clc02G12530 vs. TAIR 10
Match: AT4G00680.1 (actin depolymerizing factor 8 )

HSP 1 Score: 160.2 bits (404), Expect = 1.6e-39
Identity = 81/184 (44.02%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 8   ATTGMWVSDECKNSFMEMKWKKVHRYIVFKIDEGSRLVTVDKVGGPAESYDDLTASLPND 67
           + +GM V+DECK  F+E+K K+ +R+IVFKIDE ++ V ++K+G P E+YDD T+S+P+D
Sbjct: 4   SASGMHVNDECKIKFLELKAKRTYRFIVFKIDEKAQQVQIEKLGNPEETYDDFTSSIPDD 63

Query: 68  DCRYAVFDFDFVTVDNCRKSKIFFIAWYLPRFFAVFPRSHLLFIPRIICLINYMSSDRKR 127
           +CRYAV+DFDF T DNC+KSKIFFIAW                                 
Sbjct: 64  ECRYAVYDFDFTTEDNCQKSKIFFIAW--------------------------------- 123

Query: 128 NSNLSRETLTDYLNRILSPTESRIRAKILYATSKDGLRRVLEGIHYEVQATDPTEMGIDV 187
                            SP  SR+R+K+LYA+SKD  +R +EGI  E+QATDP+EM +D+
Sbjct: 124 -----------------SPDTSRVRSKMLYASSKDRFKREMEGIQVELQATDPSEMSLDI 137

Query: 188 IKDR 192
           IK R
Sbjct: 184 IKGR 137

The following BLAST results are available for this feature:

BLAST of Clc02G12530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147035.1	5.4e-69	74.09	actin-depolymerizing factor 5 [Cucumis sativus] >XP_008457680.1 PREDICTED: actin...	[more]
XP_038901914.1	1.2e-68	73.58	actin-depolymerizing factor 5-like [Benincasa hispida]	[more]
KAG6571025.1	5.1e-67	72.54	Actin-depolymerizing factor 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022943996.1	5.1e-67	72.54	actin-depolymerizing factor 5-like [Cucurbita moschata] >XP_022986745.1 actin-de...	[more]
XP_023512924.1	9.5e-66	71.50	actin-depolymerizing factor 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc02G12530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZNT3	2.0e-58	63.21	Actin-depolymerizing factor 5 OS=Arabidopsis thaliana OX=3702 GN=ADF5 PE=1 SV=1	[more]
O49606	6.7e-54	56.54	Actin-depolymerizing factor 9 OS=Arabidopsis thaliana OX=3702 GN=ADF9 PE=2 SV=2	[more]
Q10P87	1.1e-53	57.51	Actin-depolymerizing factor 5 OS=Oryza sativa subsp. japonica OX=39947 GN=ADF5 P...	[more]
Q8SAG3	4.0e-43	48.11	Actin-depolymerizing factor OS=Vitis vinifera OX=29760 PE=2 SV=1	[more]
Q9ZSK2	6.5e-41	47.03	Actin-depolymerizing factor 6 OS=Arabidopsis thaliana OX=3702 GN=ADF6 PE=1 SV=1	[more]

BLAST of Clc02G12530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLM1	2.6e-69	74.09	ADF-H domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G270170 PE=3 ...	[more]
A0A1S3C6R0	2.6e-69	74.09	actin-depolymerizing factor 5-like OS=Cucumis melo OX=3656 GN=LOC103497322 PE=3 ...	[more]
A0A6J1JEW6	2.4e-67	72.54	actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111484412 P...	[more]
A0A6J1FT84	2.4e-67	72.54	actin-depolymerizing factor 5-like OS=Cucurbita moschata OX=3662 GN=LOC111448560...	[more]
A0A6J1I143	6.0e-66	71.50	actin-depolymerizing factor 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469893 P...	[more]

BLAST of Clc02G12530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G16700.1	1.4e-59	63.21	actin depolymerizing factor 5	[more]
AT4G34970.1	4.7e-55	56.54	actin depolymerizing factor 9	[more]
AT2G16700.2	2.6e-53	60.99	actin depolymerizing factor 5	[more]
AT2G31200.1	4.6e-42	47.03	actin depolymerizing factor 6	[more]
AT4G00680.1	1.6e-39	44.02	actin depolymerizing factor 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002108	Actin-depolymerising factor homology domain	SMART	SM00102	adf_2	coord: 16..193 e-value: 1.6E-28 score: 110.7
IPR002108	Actin-depolymerising factor homology domain	PFAM	PF00241	Cofilin_ADF	coord: 145..190 e-value: 2.5E-7 score: 30.5 coord: 18..94 e-value: 1.8E-16 score: 60.0
IPR002108	Actin-depolymerising factor homology domain	PROSITE	PS51263	ADF_H	coord: 11..193 score: 20.161177
IPR029006	ADF-H/Gelsolin-like domain superfamily	GENE3D	3.40.20.10	Severin	coord: 2..193 e-value: 3.3E-41 score: 142.7
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 5..94
IPR017904	ADF/Cofilin	PANTHER	PTHR11913	COFILIN-RELATED	coord: 145..193
IPR017904	ADF/Cofilin	CDD	cd11286	ADF_cofilin_like	coord: 10..192 e-value: 1.15085E-51 score: 160.8
None	No IPR available	PANTHER	PTHR11913:SF98	ACTIN DEPOLYMERIZING FACTOR 5-RELATED	coord: 5..94
None	No IPR available	PANTHER	PTHR11913:SF98	ACTIN DEPOLYMERIZING FACTOR 5-RELATED	coord: 145..193
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 145..191
None	No IPR available	SUPERFAMILY	55753	Actin depolymerizing proteins	coord: 6..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G12530.2	Clc02G12530.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
biological_process	GO:0030042	actin filament depolymerization
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0003779	actin binding