Clc02G12320 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G12320
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transposable element protein
Location	ClcChr02: 23923213 .. 23924031 (-)
RNA-Seq Expression	Clc02G12320
Synteny	Clc02G12320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTATCTTGGAAGTGGAGTTATTTGATGTTTGGGGTATTGACTTTATGGGGCATTTTCCTATTTCTTCTAATGGTTACCTATACATTCTAGTTGCAGTAGATTATGTATCTAAGTGGGTAGAACCCATAGCCACTAGGACCAATGATGCTCGCACTGTTTTAAAATTCTTGCATAAAAACATTTTCACACGTTTTGGTACACCTAGAGCTATTATTAGTGATGAGGGTTCTCACTTTTGCAATAAACTGTTTGAATCCATGATGCAAAAATATAATGTTAATCATAAAATTACTACAGCTTATCATCCTCAAACTAATGGCCTTGCTGAGTTATCTAACAGGGAAATCAAGCAAGTTTTGGACAAGACAGTCAAGACCAATAGGAAGGATTGGGCCCTTAAGCTCGATGATGCACTGTGGGCCTACCGCACAGCTTTCAAAACTCCAATTGGTACTTCACCGTATAGGTTGGTATTTGGAAAGGCTTGTCACTTACCGGTAGAGCTCGAGCATAGAGCTTATTGGGCCATCAAGAAACTGAACATGGATTTCGAGAAAGCCGGTGAGAAACGCCTCTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTAATAAGAATACCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACCTCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTGCGCTTGTTTCCAGGAAAGCTTAGGACACAATGGTCGGGACCCTTTATCATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTATAA

mRNA sequence

atgaaacctatcttggaagtggagttatttgatgtttggggtattgactttatggggcattttcctatttcttctaatggttacctatacattctagttgcagtagattatgtatctaagtgggtagaacccatagccactaggaccaatgatgctcgcactgttttaaaattcttgcataaaaacattttcacacgttttggtacacctagagctattattagtgatgagggttctcacttttgcaataaactgtttgaatccatgatgcaaaaatataatgttaatcataaaattactacagcttatcatcctcaaactaatggccttgctgagttatctaacagggaaatcaagcaagttttggacaagacagtcaagaccaataggaaggattgggcccttaagctcgatgatgcactgtgggcctaccgcacagctttcaaaactccaattggtacttcaccgtataggttggtatttggaaaggcttgtcacttaccggtagagctcgagcatagagcttattgggccatcaagaaactgaacatggatttcgagaaagccggtgagaaacgcctcttagaactcaatgagatggaggagttccgtgctcaagctaataagaataccaaactttacaaagagcgcactgcgagatggcatgacaagaagatcacctcacgaaccttccttccaggacaaagagtattactttttaactcacgtttgcgcttgtttccaggaaagcttaggacacaatggtcgggaccctttatcattgtcaaggtatccccacacggagccgtggaactataa

Coding sequence (CDS)

ATGAAACCTATCTTGGAAGTGGAGTTATTTGATGTTTGGGGTATTGACTTTATGGGGCATTTTCCTATTTCTTCTAATGGTTACCTATACATTCTAGTTGCAGTAGATTATGTATCTAAGTGGGTAGAACCCATAGCCACTAGGACCAATGATGCTCGCACTGTTTTAAAATTCTTGCATAAAAACATTTTCACACGTTTTGGTACACCTAGAGCTATTATTAGTGATGAGGGTTCTCACTTTTGCAATAAACTGTTTGAATCCATGATGCAAAAATATAATGTTAATCATAAAATTACTACAGCTTATCATCCTCAAACTAATGGCCTTGCTGAGTTATCTAACAGGGAAATCAAGCAAGTTTTGGACAAGACAGTCAAGACCAATAGGAAGGATTGGGCCCTTAAGCTCGATGATGCACTGTGGGCCTACCGCACAGCTTTCAAAACTCCAATTGGTACTTCACCGTATAGGTTGGTATTTGGAAAGGCTTGTCACTTACCGGTAGAGCTCGAGCATAGAGCTTATTGGGCCATCAAGAAACTGAACATGGATTTCGAGAAAGCCGGTGAGAAACGCCTCTTAGAACTCAATGAGATGGAGGAGTTCCGTGCTCAAGCTAATAAGAATACCAAACTTTACAAAGAGCGCACTGCGAGATGGCATGACAAGAAGATCACCTCACGAACCTTCCTTCCAGGACAAAGAGTATTACTTTTTAACTCACGTTTGCGCTTGTTTCCAGGAAAGCTTAGGACACAATGGTCGGGACCCTTTATCATTGTCAAGGTATCCCCACACGGAGCCGTGGAACTATAA

Protein sequence

MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL

Homology

[Close]

BLAST of Clc02G12320 vs. NCBI nr
Match: XP_023874613.1 (uncharacterized protein LOC111987139 [Quercus suber])

HSP 1 Score: 442.2 bits (1136), Expect = 3.3e-120
Identity = 207/272 (76.10%), Postives = 238/272 (87.50%), Query Frame = 0


Query: 1    MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLH 60
            +K ILEVELFDVWGIDFMG FP  S G++YIL+AVDYVSKWVE IAT TNDA+ VLKFLH
Sbjct: 1450 LKNILEVELFDVWGIDFMGPFP-PSFGFVYILLAVDYVSKWVEAIATTTNDAKVVLKFLH 1509

Query: 61   KNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQ 120
            KNIFTRFGTPRAIISDEG+HFCNKLF++++ KY V HKI  AYHPQTNG AE+SNREIK 
Sbjct: 1510 KNIFTRFGTPRAIISDEGTHFCNKLFDNLLSKYGVKHKIALAYHPQTNGQAEISNREIKN 1569

Query: 121  VLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIK 180
            +L+KTV TNRKDWA KLDDALWAYRTAFKTPIG SPYRLVFGKACHLPVELEH+AYWA+K
Sbjct: 1570 ILEKTVNTNRKDWAKKLDDALWAYRTAFKTPIGMSPYRLVFGKACHLPVELEHKAYWAVK 1629

Query: 181  KLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLF 240
            K N+D + AGEKRLL+LNEM+EFR  A +N K+YKERT +WHDK+I  R F PGQ+VLLF
Sbjct: 1630 KFNLDLKAAGEKRLLQLNEMDEFRNDAYENAKIYKERTKKWHDKQILRREFAPGQQVLLF 1689

Query: 241  NSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            NSRL+LFPGKLR++W+GP+ I KVS  GA++L
Sbjct: 1690 NSRLKLFPGKLRSRWTGPYTIDKVSSFGAIDL 1720

[Close]

BLAST of Clc02G12320 vs. NCBI nr
Match: XP_012842899.1 (PREDICTED: uncharacterized protein LOC105963074 [Erythranthe guttata])

HSP 1 Score: 437.2 bits (1123), Expect = 1.0e-118
Identity = 204/267 (76.40%), Postives = 232/267 (86.89%), Query Frame = 0


Query: 6    EVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFT 65
            EVELFDVWGIDFMG FP SSNG LYIL+AVDYVSKWVE IAT  NDARTVLKF HKNIF+
Sbjct: 1582 EVELFDVWGIDFMGPFP-SSNGKLYILLAVDYVSKWVEAIATTANDARTVLKFFHKNIFS 1641

Query: 66   RFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDKT 125
            RFGTPRAIISDEGSHFCNKL  ++  K  + HKI  AYHPQTNGLAELSNREIKQ+L+KT
Sbjct: 1642 RFGTPRAIISDEGSHFCNKLLTNLTNKLGIRHKIALAYHPQTNGLAELSNREIKQILEKT 1701

Query: 126  VKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMD 185
            V TNRKDWALKLDDALWAYRTAFKTPIG SPY+LV+GKACHLPVELEHRAYWA+KKLN D
Sbjct: 1702 VSTNRKDWALKLDDALWAYRTAFKTPIGMSPYKLVYGKACHLPVELEHRAYWAVKKLNFD 1761

Query: 186  FEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLR 245
               AG++RLL+LNEMEEFR  A +N K+YKE+T +WHDK+IT R F  G +VLLFNSRLR
Sbjct: 1762 QTAAGDRRLLQLNEMEEFRNDAYENAKIYKEKTKKWHDKRITKREFRAGDQVLLFNSRLR 1821

Query: 246  LFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            LFPGKL+++WSGPF+++ V+P G +E+
Sbjct: 1822 LFPGKLKSRWSGPFVVLSVTPQGVIEI 1847

[Close]

BLAST of Clc02G12320 vs. NCBI nr
Match: XP_012833448.1 (PREDICTED: uncharacterized protein LOC105954320 [Erythranthe guttata])

HSP 1 Score: 436.0 bits (1120), Expect = 2.3e-118
Identity = 203/267 (76.03%), Postives = 231/267 (86.52%), Query Frame = 0


Query: 6    EVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFT 65
            EVELFDVWGIDFMG FP SSNG LYIL+AVDYVSKWVE IAT TNDARTVLKF HKNIF+
Sbjct: 1823 EVELFDVWGIDFMGPFP-SSNGKLYILLAVDYVSKWVEAIATTTNDARTVLKFFHKNIFS 1882

Query: 66   RFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDKT 125
            RFGTPRAIISDEGSHFCNKL  ++  K  + HKI  AYHPQTNGLAELSNREIKQ+L+KT
Sbjct: 1883 RFGTPRAIISDEGSHFCNKLLTNLTNKLGIRHKIALAYHPQTNGLAELSNREIKQILEKT 1942

Query: 126  VKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMD 185
            V TNRKDWALKLDDALWAYRTAFKTPIG SPY+LV+GKACHLPVELEHRAYWA+KKLN D
Sbjct: 1943 VSTNRKDWALKLDDALWAYRTAFKTPIGMSPYKLVYGKACHLPVELEHRAYWAVKKLNFD 2002

Query: 186  FEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLR 245
                G++RLL+LNEMEEFR  A +N K+YKE+T +WHDK+IT R F  G +VLLFNSRLR
Sbjct: 2003 QTATGDRRLLQLNEMEEFRNDAYENAKIYKEKTKKWHDKRITKREFRAGDQVLLFNSRLR 2062

Query: 246  LFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            LFPGKL+++WSGPF+++  +P G +E+
Sbjct: 2063 LFPGKLKSRWSGPFVVLSATPQGVIEI 2088

[Close]

BLAST of Clc02G12320 vs. NCBI nr
Match: XP_012833687.1 (PREDICTED: uncharacterized protein LOC105954563 [Erythranthe guttata] >XP_012857704.1 PREDICTED: uncharacterized protein LOC105976985 [Erythranthe guttata])

HSP 1 Score: 436.0 bits (1120), Expect = 2.3e-118
Identity = 203/267 (76.03%), Postives = 231/267 (86.52%), Query Frame = 0


Query: 6    EVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFT 65
            EVELFDVWGIDFMG FP SSNG LYIL+AVDYVSKWVE IAT TNDARTVLKF HKNIF+
Sbjct: 1440 EVELFDVWGIDFMGPFP-SSNGKLYILLAVDYVSKWVEAIATTTNDARTVLKFFHKNIFS 1499

Query: 66   RFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDKT 125
            RFGTPRAIISDEGSHFCNKL  ++  K  + HKI  AYHPQTNGLAELSNREIKQ+L+KT
Sbjct: 1500 RFGTPRAIISDEGSHFCNKLLTNLTNKLGIRHKIALAYHPQTNGLAELSNREIKQILEKT 1559

Query: 126  VKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMD 185
            V TNRKDWALKLDDALWAYRTAFKTPIG SPY+LV+GKACHLPVELEHRAYWA+KKLN D
Sbjct: 1560 VSTNRKDWALKLDDALWAYRTAFKTPIGMSPYKLVYGKACHLPVELEHRAYWAVKKLNFD 1619

Query: 186  FEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLR 245
                G++RLL+LNEMEEFR  A +N K+YKE+T +WHDK+IT R F  G +VLLFNSRLR
Sbjct: 1620 QTATGDRRLLQLNEMEEFRNDAYENAKIYKEKTKKWHDKRITKREFRAGDQVLLFNSRLR 1679

Query: 246  LFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            LFPGKL+++WSGPF+++  +P G +E+
Sbjct: 1680 LFPGKLKSRWSGPFVVLSATPQGVIEI 1705

[Close]

BLAST of Clc02G12320 vs. NCBI nr
Match: XP_012846413.1 (PREDICTED: uncharacterized protein LOC105966405 [Erythranthe guttata])

HSP 1 Score: 436.0 bits (1120), Expect = 2.3e-118
Identity = 203/267 (76.03%), Postives = 231/267 (86.52%), Query Frame = 0


Query: 6    EVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFT 65
            EVELFDVWGIDFMG FP SSNG LYIL+AVDYVSKWVE IAT TNDARTVLKF HKNIF+
Sbjct: 1440 EVELFDVWGIDFMGPFP-SSNGKLYILLAVDYVSKWVEAIATTTNDARTVLKFFHKNIFS 1499

Query: 66   RFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDKT 125
            RFGTPRAIISDEGSHFCNKL  ++  K  + HKI  AYHPQTNGLAELSNREIKQ+L+KT
Sbjct: 1500 RFGTPRAIISDEGSHFCNKLLTNLTNKLGIRHKIALAYHPQTNGLAELSNREIKQILEKT 1559

Query: 126  VKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMD 185
            V TNRKDWALKLDDALWAYRTAFKTPIG SPY+LV+GKACHLPVELEHRAYWA+KKLN D
Sbjct: 1560 VSTNRKDWALKLDDALWAYRTAFKTPIGMSPYKLVYGKACHLPVELEHRAYWAVKKLNFD 1619

Query: 186  FEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLR 245
                G++RLL+LNEMEEFR  A +N K+YKE+T +WHDK+IT R F  G +VLLFNSRLR
Sbjct: 1620 QTATGDRRLLQLNEMEEFRNDAYENAKIYKEKTKKWHDKRITKREFRAGDQVLLFNSRLR 1679

Query: 246  LFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            LFPGKL+++WSGPF+++  +P G +E+
Sbjct: 1680 LFPGKLKSRWSGPFVVLSATPQGVIEI 1705

[Close]

BLAST of Clc02G12320 vs. ExPASy Swiss-Prot
Match: P10273 (Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 75/255 (29.41%), Postives = 116/255 (45.49%), Query Frame = 0


Query: 13   WGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFTRFGTPRA 72
            W +DF    P    GY Y+LV +D  S W E    +   A+ V K L + IF R+G P+ 
Sbjct: 1419 WEVDFTEIKP-GMYGYKYLLVFIDTFSGWAEAYPAKHETAKVVAKKLLEEIFPRYGIPQV 1478

Query: 73   IISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDK-TVKTNRK 132
            + SD G  F +++ +S+     +N K+  AY PQ++G  E  NR IK+ L K T++T  K
Sbjct: 1479 LGSDNGPAFISQVSQSVATLLGINWKLHCAYRPQSSGQVERMNRSIKETLTKLTLETGSK 1538

Query: 133  DWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMDFEKAGE 192
            DW L L   L+  R     P G +P+ +++G     P  + H     I            
Sbjct: 1539 DWVLLLPLVLYRVRNT-PGPHGLTPFEILYG----APPPMAHFFDTDISSFATSPTMQAH 1598

Query: 193  KRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKL 252
             R L+L + E  R  A      Y+E+     +  +    F PG  V +   + +     L
Sbjct: 1599 LRALQLVQEEIQRPLA----AAYREKL----ETPVVPHPFKPGDSVWVRRHQTK----NL 1655

Query: 253  RTQWSGPFIIVKVSP 267
              +W GP I++  +P
Sbjct: 1659 EPRWKGPHIVLLTTP 1655

[Close]

BLAST of Clc02G12320 vs. ExPASy Swiss-Prot
Match: P26810 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 78/255 (30.59%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 13   WGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFTRFGTPRA 72
            W IDF    P    GY Y+LV VD  S WVE   T+   A+ V K L + IF RFG P+ 
Sbjct: 1453 WEIDFTEVKP-GLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQV 1512

Query: 73   IISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDK-TVKTNRK 132
            + +D G  F +K+ +++     V+ K+  AY PQ++G  E  NR IK+ L K T+ T  +
Sbjct: 1513 LGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSR 1572

Query: 133  DWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMDFEKAGE 192
            DW L L  AL+  R     P G +PY +++G     P  L +     + K+  +      
Sbjct: 1573 DWVLLLPLALYRARNT-PGPHGLTPYEILYG----APPPLVNFPDPDMAKVTHNPSLQAH 1632

Query: 193  KRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKL 252
             + L L + E +R  A      Y+E+     D+ +    F  G  V +   + +     L
Sbjct: 1633 LQALYLVQHEVWRPLA----AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK----NL 1689

Query: 253  RTQWSGPFIIVKVSP 267
              +W GP+ ++  +P
Sbjct: 1693 EPRWKGPYTVLLTTP 1689

[Close]

BLAST of Clc02G12320 vs. ExPASy Swiss-Prot
Match: P26808 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 GN=pol PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 78/255 (30.59%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 13   WGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFTRFGTPRA 72
            W IDF    P    GY Y+LV VD  S WVE   T+   A+ V K L + IF RFG P+ 
Sbjct: 1452 WEIDFTEVKP-GLYGYKYLLVFVDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQV 1511

Query: 73   IISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDK-TVKTNRK 132
            + +D G  F +K+ +++     V+ K+  AY PQ++G  E  NR IK+ L K T+ T  +
Sbjct: 1512 LGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSR 1571

Query: 133  DWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMDFEKAGE 192
            DW L L  AL+  R     P G +PY +++G     P  L +     + K+  +      
Sbjct: 1572 DWVLLLPLALYRARNT-PGPHGLTPYEILYG----APPPLVNFPDPDMAKVTHNPSLQAH 1631

Query: 193  KRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKL 252
             + L L + E +R  A      Y+E+     D+ +    F  G  V +   + +     L
Sbjct: 1632 LQALYLVQHEVWRPLA----AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK----NL 1688

Query: 253  RTQWSGPFIIVKVSP 267
              +W GP+ ++  +P
Sbjct: 1692 EPRWKGPYTVLLTTP 1688

[Close]

BLAST of Clc02G12320 vs. ExPASy Swiss-Prot
Match: P26809 (Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=pol PE=3 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.8e-21
Identity = 77/255 (30.20%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 13   WGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFTRFGTPRA 72
            W IDF    P    GY Y+LV +D  S WVE   T+   A+ V K L + IF RFG P+ 
Sbjct: 1452 WEIDFTEVKP-GLYGYKYLLVFIDTFSGWVEAFPTKKETAKVVTKKLLEEIFPRFGMPQV 1511

Query: 73   IISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDK-TVKTNRK 132
            + +D G  F +K+ +++     V+ K+  AY PQ++G  E  NR IK+ L K T+ T  +
Sbjct: 1512 LGTDNGPAFVSKVSQTVADLLGVDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLATGSR 1571

Query: 133  DWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMDFEKAGE 192
            DW L L  AL+  R     P G +PY +++G     P  L +     + K+  +      
Sbjct: 1572 DWVLLLPLALYRARNT-PGPHGLTPYEILYG----APPPLVNFPDPDMAKVTHNPSLQAH 1631

Query: 193  KRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKL 252
             + L L + E +R  A      Y+E+     D+ +    F  G  V +   + +     L
Sbjct: 1632 LQALYLVQHEVWRPLA----AAYQEQL----DRPVVPHPFRVGDTVWVRRHQTK----NL 1688

Query: 253  RTQWSGPFIIVKVSP 267
              +W GP+ ++  +P
Sbjct: 1692 EPRWKGPYTVLLTTP 1688

[Close]

BLAST of Clc02G12320 vs. ExPASy Swiss-Prot
Match: Q2F7J3 (Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) OX=356663 GN=gag-pol PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-20
Identity = 74/255 (29.02%), Postives = 121/255 (47.45%), Query Frame = 0


Query: 13   WGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLHKNIFTRFGTPRA 72
            W +DF    P    GY Y+LV VD  S WVE   T+   A+ V K L ++IF RFG P+ 
Sbjct: 1450 WEVDFTEVKP-GLYGYKYLLVFVDTFSGWVEAFPTKRETAKVVTKKLLEDIFPRFGMPQV 1509

Query: 73   IISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQVLDK-TVKTNRK 132
            + SD G  F +++ +S+     ++ K+  AY PQ++G  E  NR IK+ L K T+ +  +
Sbjct: 1510 LGSDNGPAFASQVSQSVADLLGIDWKLHCAYRPQSSGQVERMNRTIKETLTKLTLASGTR 1569

Query: 133  DWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIKKLNMDFEKAGE 192
            DW L L  AL+  R     P G +PY +++G     P  L +     + KL         
Sbjct: 1570 DWVLLLPLALYRARNT-PGPHGLTPYEILYG----APPPLVNFHDPEMSKLTNSPSLQAH 1629

Query: 193  KRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLFNSRLRLFPGKL 252
             + L+  + E ++  A      Y+++     D+ +    F  G  V +   + +     L
Sbjct: 1630 LQALQAVQQEVWKPLA----AAYQDQL----DQPVIPHPFRVGDAVWVRRHQTK----NL 1686

Query: 253  RTQWSGPFIIVKVSP 267
              +W GP+ ++  +P
Sbjct: 1690 EPRWKGPYTVLLTTP 1686

[Close]

BLAST of Clc02G12320 vs. ExPASy TrEMBL
Match: A0A1S4BW51 (uncharacterized protein LOC107812489 OS=Nicotiana tabacum OX=4097 GN=LOC107812489 PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 1.4e-113
Identity = 192/272 (70.59%), Postives = 233/272 (85.66%), Query Frame = 0


Query: 1   MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLH 60
           ++ IL VELFDVWGIDFMG FP  SNG+ YILVAVDYVSKWVE IA  TNDA+ V+ F+ 
Sbjct: 140 LQNILAVELFDVWGIDFMGPFPY-SNGHRYILVAVDYVSKWVEAIALPTNDAKVVVSFVK 199

Query: 61  KNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQ 120
           K+IFTRFGTPR +ISD G+HFCNKL ++++ KY V HK+ TAYHPQT+G  E+SNRE+KQ
Sbjct: 200 KHIFTRFGTPRVLISDGGTHFCNKLLKNVLAKYGVRHKVATAYHPQTSGQVEVSNREVKQ 259

Query: 121 VLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIK 180
           +L+KTV  NRKDW+ KL+DALWAYRTA+KTPIGTSPYRLV+GKACHLPVE+EH+AYWAIK
Sbjct: 260 ILEKTVSANRKDWSGKLEDALWAYRTAYKTPIGTSPYRLVYGKACHLPVEIEHKAYWAIK 319

Query: 181 KLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLF 240
           KLNM+ + AGEKRLL+LNE++EFR  A +N KLYKE+T +WHDK I  R F PGQ VLLF
Sbjct: 320 KLNMNMDLAGEKRLLQLNELDEFRLHAYENAKLYKEKTKKWHDKHIQHREFEPGQEVLLF 379

Query: 241 NSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL 273
           NSRL+LFPGKL+++W+GPF++V V+PHG VEL
Sbjct: 380 NSRLKLFPGKLKSRWAGPFVVVSVTPHGTVEL 410

[Close]

BLAST of Clc02G12320 vs. ExPASy TrEMBL
Match: A0A4Y1QYH5 (Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_005832 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 5.1e-111
Identity = 192/272 (70.59%), Postives = 227/272 (83.46%), Query Frame = 0


Query: 1   MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLH 60
           +K IL VELFDVWGIDFMG FP SS GY YILVAVDYVSKWVE IAT+TND + VLKFL 
Sbjct: 591 LKNILFVELFDVWGIDFMGPFP-SSFGYTYILVAVDYVSKWVEAIATKTNDHKVVLKFLR 650

Query: 61  KNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQ 120
            NIFTRFGTPRA+ISD GSHFCNKLFE++M+KYN+ H+++T YHPQT+G  E+SNREIKQ
Sbjct: 651 DNIFTRFGTPRAVISDGGSHFCNKLFEALMKKYNITHRVSTPYHPQTSGQVEISNREIKQ 710

Query: 121 VLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIK 180
           +L+K V + RKDWA KL+DALWAYRTA+KTPIG SPYRLVFGKACHLP+ELEH A+WAIK
Sbjct: 711 ILEKVVNSTRKDWAAKLNDALWAYRTAYKTPIGMSPYRLVFGKACHLPMELEHNAFWAIK 770

Query: 181 KLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLF 240
           KLN D +KAG  R  +LNE+EE R ++ +N KLYKERT  +HD+ I  + F  G  VLLF
Sbjct: 771 KLNFDLDKAGHVRKFQLNELEEIRHESYENAKLYKERTKSYHDRNIQRKEFTKGMSVLLF 830

Query: 241 NSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL 273
           NSRLRLFPGKL+++W GPF +V VSP+GAVE+
Sbjct: 831 NSRLRLFPGKLKSRWLGPFTVVNVSPYGAVEI 861

[Close]

BLAST of Clc02G12320 vs. ExPASy TrEMBL
Match: A0A5H2XID6 (Reverse transcriptase OS=Prunus dulcis OX=3755 GN=Prudu_268S000200 PE=4 SV=1)

HSP 1 Score: 410.6 bits (1054), Expect = 5.1e-111
Identity = 192/272 (70.59%), Postives = 227/272 (83.46%), Query Frame = 0


Query: 1    MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLH 60
            +K IL VELFDVWGIDFMG FP SS GY YILVAVDYVSKWVE IAT+TND + VLKFL 
Sbjct: 1238 LKNILFVELFDVWGIDFMGPFP-SSFGYTYILVAVDYVSKWVEAIATKTNDHKVVLKFLR 1297

Query: 61   KNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQ 120
             NIFTRFGTPRA+ISD GSHFCNKLFE++M+KYN+ H+++T YHPQT+G  E+SNREIKQ
Sbjct: 1298 DNIFTRFGTPRAVISDGGSHFCNKLFEALMKKYNITHRVSTPYHPQTSGQVEISNREIKQ 1357

Query: 121  VLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIK 180
            +L+K V + RKDWA KL+DALWAYRTA+KTPIG SPYRLVFGKACHLP+ELEH A+WAIK
Sbjct: 1358 ILEKVVNSTRKDWAAKLNDALWAYRTAYKTPIGMSPYRLVFGKACHLPMELEHNAFWAIK 1417

Query: 181  KLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLF 240
            KLN D +KAG  R  +LNE+EE R ++ +N KLYKERT  +HD+ I  + F  G  VLLF
Sbjct: 1418 KLNFDLDKAGHVRKFQLNELEEIRHESYENAKLYKERTKSYHDRNIQRKEFTKGMSVLLF 1477

Query: 241  NSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            NSRLRLFPGKL+++W GPF +V VSP+GAVE+
Sbjct: 1478 NSRLRLFPGKLKSRWLGPFTVVNVSPYGAVEI 1508

[Close]

BLAST of Clc02G12320 vs. ExPASy TrEMBL
Match: A0A2G9HBV9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12579 PE=4 SV=1)

HSP 1 Score: 409.8 bits (1052), Expect = 8.7e-111
Identity = 190/272 (69.85%), Postives = 229/272 (84.19%), Query Frame = 0


Query: 1    MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLH 60
            +  ILEVELFDVWGIDFMG F + S G +YILVAVDYVSKWVE +A   ND++ V+ F+ 
Sbjct: 969  LNTILEVELFDVWGIDFMGLF-VPSFGNMYILVAVDYVSKWVEAVAVPNNDSKVVVNFIK 1028

Query: 61   KNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQ 120
            KNIFTRFGTPRAIIS+ G+HFCN+ FE+++ KY V HKI+T YHPQT+G  E+SNREIK+
Sbjct: 1029 KNIFTRFGTPRAIISNGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNREIKR 1088

Query: 121  VLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIK 180
            +L+KTV + RKDW+ +LD+ALWAYRTAFKTPIG SPY+LVFGKACHLPVELEH AYWAI+
Sbjct: 1089 ILEKTVSSTRKDWSKRLDEALWAYRTAFKTPIGMSPYKLVFGKACHLPVELEHNAYWAIR 1148

Query: 181  KLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLF 240
            KLN D + AGEKRLL+LNE++EFR QA +N K+YKE+T RWHDKKI  R F PGQ VLLF
Sbjct: 1149 KLNFDMQAAGEKRLLQLNELDEFRLQAYENAKIYKEKTKRWHDKKIVERRFEPGQYVLLF 1208

Query: 241  NSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            NSRL+LFPGKL+++WSGPF + +V  HGAVEL
Sbjct: 1209 NSRLKLFPGKLKSRWSGPFRVTEVFSHGAVEL 1239

[Close]

BLAST of Clc02G12320 vs. ExPASy TrEMBL
Match: A0A2G9FWY3 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=4 SV=1)

HSP 1 Score: 408.3 bits (1048), Expect = 2.5e-110
Identity = 191/272 (70.22%), Postives = 227/272 (83.46%), Query Frame = 0


Query: 1    MKPILEVELFDVWGIDFMGHFPISSNGYLYILVAVDYVSKWVEPIATRTNDARTVLKFLH 60
            +  ILEVELFDVWGIDFMG F I S G +YILVAVDYVSKWVE  A   ND++ V+ F+ 
Sbjct: 1270 LNTILEVELFDVWGIDFMGPF-IPSFGNMYILVAVDYVSKWVEAAAVPNNDSKVVVNFIK 1329

Query: 61   KNIFTRFGTPRAIISDEGSHFCNKLFESMMQKYNVNHKITTAYHPQTNGLAELSNREIKQ 120
            KNIFTRFGTPRAIISD G+HFCN+ FE+++ KY V HKI+T YHPQT+G  E+SNREIK+
Sbjct: 1330 KNIFTRFGTPRAIISDGGTHFCNRSFEALLSKYGVKHKISTPYHPQTSGQVEVSNREIKR 1389

Query: 121  VLDKTVKTNRKDWALKLDDALWAYRTAFKTPIGTSPYRLVFGKACHLPVELEHRAYWAIK 180
            +L+KTV + RKDW+ +LD+ALWAYRTA+KTPIG SPYRLVFGKACHLPVELEH AYWAI+
Sbjct: 1390 ILEKTVSSTRKDWSKRLDEALWAYRTAYKTPIGMSPYRLVFGKACHLPVELEHNAYWAIR 1449

Query: 181  KLNMDFEKAGEKRLLELNEMEEFRAQANKNTKLYKERTARWHDKKITSRTFLPGQRVLLF 240
            KLN D + AGEKRLL+LNE++EFR  A +N K+YKE+  RWH+KKI  R F PGQ VLLF
Sbjct: 1450 KLNFDMQAAGEKRLLQLNELDEFRLHAYENAKIYKEKKKRWHEKKIVERHFEPGQYVLLF 1509

Query: 241  NSRLRLFPGKLRTQWSGPFIIVKVSPHGAVEL 273
            NSRL+LFPGKL+++WSGPF I +V PHGAVEL
Sbjct: 1510 NSRLKLFPGKLKSRWSGPFRITEVFPHGAVEL 1540

The following BLAST results are available for this feature:

BLAST of Clc02G12320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023874613.1	3.3e-120	76.10	uncharacterized protein LOC111987139 [Quercus suber]	[more]
XP_012842899.1	1.0e-118	76.40	PREDICTED: uncharacterized protein LOC105963074 [Erythranthe guttata]	[more]
XP_012833448.1	2.3e-118	76.03	PREDICTED: uncharacterized protein LOC105954320 [Erythranthe guttata]	[more]
XP_012833687.1	2.3e-118	76.03	PREDICTED: uncharacterized protein LOC105954563 [Erythranthe guttata] >XP_012857...	[more]
XP_012846413.1	2.3e-118	76.03	PREDICTED: uncharacterized protein LOC105966405 [Erythranthe guttata]	[more]

BLAST of Clc02G12320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10273	2.1e-21	29.41	Gag-Pol polyprotein OS=Feline leukemia virus OX=11768 GN=pol PE=3 SV=2	[more]
P26810	2.1e-21	30.59	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate 57) OX=11796 GN=pol...	[more]
P26808	2.1e-21	30.59	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate PVC-211) OX=11798 G...	[more]
P26809	2.8e-21	30.20	Gag-Pol polyprotein OS=Friend murine leukemia virus (isolate FB29) OX=11797 GN=p...	[more]
Q2F7J3	1.0e-20	29.02	Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) OX=356663 GN...	[more]

BLAST of Clc02G12320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4BW51	1.4e-113	70.59	uncharacterized protein LOC107812489 OS=Nicotiana tabacum OX=4097 GN=LOC10781248...	[more]
A0A4Y1QYH5	5.1e-111	70.59	Transposable element protein OS=Prunus dulcis OX=3755 GN=Prudu_005832 PE=4 SV=1	[more]
A0A5H2XID6	5.1e-111	70.59	Reverse transcriptase OS=Prunus dulcis OX=3755 GN=Prudu_268S000200 PE=4 SV=1	[more]
A0A2G9HBV9	8.7e-111	69.85	DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_125...	[more]
A0A2G9FWY3	2.5e-110	70.22	Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_29952 PE=...	[more]

BLAST of Clc02G12320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 11..105 e-value: 4.4E-16 score: 59.1
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..164 score: 23.460226
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 5..212 e-value: 1.7E-55 score: 189.4
None	No IPR available	PANTHER	PTHR46148:SF31	PROTEIN NYNRIN-LIKE	coord: 1..271
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 1..271
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 9..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G12320.1	Clc02G12320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding