Clc02G12240 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G12240
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	ClcChr02: 23899274 .. 23899570 (-)
RNA-Seq Expression	Clc02G12240
Synteny	Clc02G12240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTTGTTCTGAGGTTCGCCTAGAGGAAGACAAATCCAATGCTAAGAACATCATAACTATTTCTGCTACTGATTCAGATCACTTTCCTTTGGCATTATCTTCCGAAGGAATTGCTTGGGGCCCTTGCCCCTTCAGATTTGAGAATTCATGGCTTCAAGTCCCTTCTTCTCGTTCTATGGTTGAGGTTTGGTGGACTCAACCTCCTATTACTGACTGGCTAGGGCATGGTTTAATGATGAAATTACAAAGTTTGAAATTGGCTATTCGAGAATGGAACACCTACCCACCGTGA

mRNA sequence

atggaagtttgttctgaggttcgcctagaggaagacaaatccaatgctaagaacatcataactatttctgctactgattcagatcactttcctttggcattatcttccgaaggaattgcttggggcccttgccccttcagatttgagaattcatggcttcaagtcccttcttctcgttctatggttgaggtttggtggactcaacctcctattactgactggctagggcatggtttaatgatgaaattacaaagtttgaaattggctattcgagaatggaacacctacccaccgtga

Coding sequence (CDS)

ATGGAAGTTTGTTCTGAGGTTCGCCTAGAGGAAGACAAATCCAATGCTAAGAACATCATAACTATTTCTGCTACTGATTCAGATCACTTTCCTTTGGCATTATCTTCCGAAGGAATTGCTTGGGGCCCTTGCCCCTTCAGATTTGAGAATTCATGGCTTCAAGTCCCTTCTTCTCGTTCTATGGTTGAGGTTTGGTGGACTCAACCTCCTATTACTGACTGGCTAGGGCATGGTTTAATGATGAAATTACAAAGTTTGAAATTGGCTATTCGAGAATGGAACACCTACCCACCGTGA

Protein sequence

MEVCSEVRLEEDKSNAKNIITISATDSDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQSLKLAIREWNTYPP

Homology

[Close]

BLAST of Clc02G12240 vs. NCBI nr
Match: KAE8648339.1 (hypothetical protein Csa_023126 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 6.4e-18
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 28  DHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQSLK 87
           DHFPLA+++  I WGPCPF+FENSWL  PS R  VE WWT   +  W  HG+MMKL++LK
Sbjct: 119 DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALK 178

Query: 88  LAIREWN 95
            + R WN
Sbjct: 179 CSFRSWN 185

[Close]

BLAST of Clc02G12240 vs. NCBI nr
Match: KAE8647279.1 (hypothetical protein Csa_002929 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 17  KNIITISATDSDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLG 76
           ++I+T+     DHFP A+ +  I WGPCPFR E SWL  P    +VE WWT   +  W G
Sbjct: 134 RDIVTL-----DHFPPAMIACDIDWGPCPFRIEKSWLSTPLFLPLVETWWTNNRVAGWPG 193

Query: 77  HGLMMKLQSLKLAIREWN 95
           HGLMMKL++L +  R WN
Sbjct: 194 HGLMMKLKALIMFFRSWN 206

[Close]

BLAST of Clc02G12240 vs. NCBI nr
Match: XP_022158956.1 (uncharacterized protein LOC111025405 [Momordica charantia])

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-13
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 22  ISATDSDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMM 81
           ++ T SDHFP+ L      WG  PFRFEN WL   + +  +E WW   P+  W GHGLMM
Sbjct: 214 MTRTTSDHFPILLDFGQNNWGLTPFRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMM 273

Query: 82  KLQSLKLAIREWNT 96
           KL+SLK AI+ W T
Sbjct: 274 KLKSLKYAIKLWIT 287

[Close]

BLAST of Clc02G12240 vs. NCBI nr
Match: XP_022145822.1 (uncharacterized protein LOC111015182 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.1e-12
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 25 TDSDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQ 84
          T SDHFP+ L++E I WGP PFRFEN+ L  P    +VE WW   P+  W  +G M KL+
Sbjct: 15 TTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWFSYGFMEKLK 74

Query: 85 SLKLAIREWN 95
           LK  + +WN
Sbjct: 75 GLKGILVQWN 84

[Close]

BLAST of Clc02G12240 vs. NCBI nr
Match: RVX15621.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 27  SDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQSL 86
           SDH+P+AL +    WGP PFRFEN WLQ PS +   + WW+    T W GH  M KLQ +
Sbjct: 914 SDHWPIALETNPFKWGPTPFRFENIWLQHPSFKECFKSWWSGFQGTGWEGHKFMRKLQFV 973

Query: 87  KLAIREWN 95
           K  ++EWN
Sbjct: 974 KANLKEWN 981

[Close]

BLAST of Clc02G12240 vs. ExPASy TrEMBL
Match: A0A0A0KMS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314840 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.1e-18
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 28 DHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQSLK 87
          DHFPLA+++  I WGPCPF+FENSWL  PS R  VE WWT   +  W  HG+MMKL++LK
Sbjct: 32 DHFPLAMTTGDIDWGPCPFKFENSWLSTPSFRPPVETWWTNNRVAGWPRHGMMMKLKALK 91

Query: 88 LAIREWN 95
           + R WN
Sbjct: 92 CSFRSWN 98

[Close]

BLAST of Clc02G12240 vs. ExPASy TrEMBL
Match: A0A6J1E2G6 (uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025405 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-14
Identity = 37/74 (50.00%), Postives = 46/74 (62.16%), Query Frame = 0


Query: 22  ISATDSDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMM 81
           ++ T SDHFP+ L      WG  PFRFEN WL   + +  +E WW   P+  W GHGLMM
Sbjct: 214 MTRTTSDHFPILLDFGQNNWGLTPFRFENMWLSHKTFKPFLETWWGNKPLHGWPGHGLMM 273

Query: 82  KLQSLKLAIREWNT 96
           KL+SLK AI+ W T
Sbjct: 274 KLKSLKYAIKLWIT 287

[Close]

BLAST of Clc02G12240 vs. ExPASy TrEMBL
Match: A0A6J1CXT6 (uncharacterized protein LOC111015182 OS=Momordica charantia OX=3673 GN=LOC111015182 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 34/70 (48.57%), Postives = 44/70 (62.86%), Query Frame = 0


Query: 25 TDSDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQ 84
          T SDHFP+ L++E I WGP PFRFEN+ L  P    +VE WW   P+  W  +G M KL+
Sbjct: 15 TTSDHFPIQLANEAIKWGPTPFRFENASLDSPQLIPLVENWWKDNPLRGWFSYGFMEKLK 74

Query: 85 SLKLAIREWN 95
           LK  + +WN
Sbjct: 75 GLKGILVQWN 84

[Close]

BLAST of Clc02G12240 vs. ExPASy TrEMBL
Match: A0A438K369 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_522 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 0


Query: 27  SDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQSL 86
           SDH+P+AL +    WGP PFRFEN WLQ PS +   + WW+    T W GH  M KLQ +
Sbjct: 914 SDHWPIALETNPFKWGPTPFRFENIWLQHPSFKECFKSWWSGFQGTGWEGHKFMRKLQFV 973

Query: 87  KLAIREWN 95
           K  ++EWN
Sbjct: 974 KANLKEWN 981

[Close]

BLAST of Clc02G12240 vs. ExPASy TrEMBL
Match: A5C9W0 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_000111 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 27  SDHFPLALSSEGIAWGPCPFRFENSWLQVPSSRSMVEVWWTQPPITDWLGHGLMMKLQSL 86
           SDH+P+AL +    WGP PFRFEN WLQ PS +     WW       W GH  M +LQS+
Sbjct: 747 SDHWPIALDTNPFMWGPTPFRFENMWLQHPSFKENFRNWWRGFQGNGWEGHKFMRRLQSV 806

Query: 87  KLAIREWNTY 97
           K  ++EWN +
Sbjct: 807 KAKLKEWNKF 816

The following BLAST results are available for this feature:

BLAST of Clc02G12240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648339.1	6.4e-18	58.21	hypothetical protein Csa_023126 [Cucumis sativus]	[more]
KAE8647279.1	1.1e-14	48.72	hypothetical protein Csa_002929 [Cucumis sativus]	[more]
XP_022158956.1	1.6e-13	50.00	uncharacterized protein LOC111025405 [Momordica charantia]	[more]
XP_022145822.1	1.1e-12	48.57	uncharacterized protein LOC111015182 [Momordica charantia]	[more]
RVX15621.1	1.4e-12	50.00	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]

BLAST of Clc02G12240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G12240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMS2	3.1e-18	58.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314840 PE=4 SV=1	[more]
A0A6J1E2G6	7.9e-14	50.00	uncharacterized protein LOC111025405 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CXT6	5.1e-13	48.57	uncharacterized protein LOC111015182 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A438K369	6.7e-13	50.00	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A5C9W0	1.1e-12	47.14	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Clc02G12240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G12240.1	Clc02G12240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid