Clc02G12180 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G12180
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase domain-containing protein
Location	ClcChr02: 23871427 .. 23874738 (-)
RNA-Seq Expression	Clc02G12180
Synteny	Clc02G12180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGTTAGTTGCAAGATCAATGGAATTTTCTTCTGCACTTGGTTCGAAGATGGGAACTTCATAGTCGAAGATATGGAAGTACAAAAAGCAATTTACTTATCGGAGACGCATGTACTCTAGATGGTAAAGCAACTCTCAAACCTCCTCAATGGTTCAAGTGTTCGTTTTTTCTGAAGGGAAATGTGTGACGACTCGAGAGCAATGAGATTATCAAAATTCAAAAATAATATGGGTTGGAATTGAAGATGTGTGGTTTGGCCAGCTACGGATGGTTGCTTCTTTATTCATGTACCAAAAGGGTCAGCACAACAAGGTTGGAATGAGTTTCTAGAAATGAATAATAGTTTCATCCATTGAAATGGATGCTCTAGACACAAGACAGAGAAAAAGGAGAAAAATCAAGAATATATCTCTCCCCCAAATTTGCTTCAGCCGAGTTATGCAGAGATTCTATCAAAAAGAACAAGTCAGCATAAACCCCTTGTTTGGGCACCACTAAAACAGAGCAAGATGGAGGCCACTCTTGGGTAGTCGAATTCTTCTGTTTTTGCACCAGATAAACAGAGCGAGTACCATTGCTGGATCCGAAAGGAAAATGAAGTGTTTAAGGAAGATTTTGCCAACTTGTGGGTTGTATCAAGACTATTCGCGTTCGATGAATGGAAAGATATTGTCAGATTTTTGGAAGATTTTTATCAAATCAAGGTCAGTATTAACCCTCTGTTTGCCGATAAGGCTCTGATTAAAGTATCTCAATGTAATTTAAAAGAGATAATCGAAACGCCTGGAAAATGGTTTGACTATCGTAAATTCCATCTTCTATTTGAAAAATGGAATTCAATTCAAGATAGTAGGCCTACTTGTATCAAAGGTTATGGTGGATGGTTGGTTATAAGAAATCTGCCGTTGGAATATTGGAACAGAGCCACCTTTGAAGCCATCGGCTCCCACTTTGGAGGTTTAGAAGAAATAACTTTAGAGACACTTAATCTTTTGAATGTATCAGAAGCCAAAATTAAAGTCAAAAGAAATTTACATGGATTTATGCCTGCATTAATTGAAATTAAAAATGAACTGAGAGGTTCAATATCTTTAAACTTTGGGGATGTTGAAGCCATTGAAATTCCTTCTTATGTACTTAGAATTATTTTTTAAAGATTTCAATAAACCAATCGATCAATGCCGTTTTAATAAAGTAGCAAAGGATGAAGATGTTAGTTGTATTTTATCAAGCTGCAACAGAAAAGACCGAAATGTGATCTTATCGTCGGAGAAGATATCAAAAAGGTCTGAGCTCGACGAAGATGCTGAGCCTGCGTCAAAGAAGACTGAGGTTCATTTTCAAATCAAAAGCGCACCAATCCAAGTCAGCAGCCAAAAAGTCGAAAAAAGTAATTCGGGCATAAAAAAGATAGTTGAAAAGTCAAAAGTTAATAGGAGAGAGAATTTCGACGGCCAAAATTGTAGTTTTCCAAACAACCAAAGCAAAAACAATCCAAATTCCTTCATAATTAAAAATTCCAAGCTGTCGGCATCCTCTAATCTCCCTTTGATGGATAATGCAACCAATCCAGGCTTCTGGTACGATATCAATGATTCGGGAAGAGTTATGAAGCTACAGAAAAAGCTGAAACATCAATTATGCAGAGTTTCAAGGTAGAACCCATTAATTTTTTCTAGGGTGCAACACGAGGATTTCCCAAGTGGTCACCTAAGGTAGAACACATTAATTCAAATGGGGCCACTCCGATGTTTCATCATAATTGCTATGGTAAGAAGCTCCCCAACAAAAAGTCGACTCTATCTGTGGTTACAAAGAAAGCCAACCTCTTCATACCTTTCCCAAAACAATTTTTAAAAGGGAGAACTTCATTTTTCAACCATGGTCAGCTCTCTCTAATTCAAACTTACTTGAAGAAAGCATCCCTTCTCTTCTCAATTTTCTCAACAATCAGTGATCGTACTCTTAGGCACAAATATTCATTTTGTGCGAGGTACCCCTTGCCCTTCTCCTTCCAAATCAAGTTTCAAGTCTCAGGAATGAAATGTAGAATCAATGGTGAGTGCAAGCAGCGATGAACTAAAATCTATGGTAAGGAGACTCAGCTAAACGAGCCTGAAACAGAGGACTCACTTAATGAGGATCTCAACAGGCTGTTTCAAGCCACGGAAGATTTTGTTAGCAGAGCATCCGAAGAAGCTGTCGTTTCCCAACGTCCAAGTAGACATTCCTCAACCTTTGAAACCAATCATTCAATTGTGTGAAATATCGTTGGTTTGATTAACAGAGCGGTTAAGAAAGTTGAATAATGAAGATCGTTTCAAGGAATACAAGAGGAATTGGTGATCAATCTAAATAATTGGACCTTAAACGCATGATTTTAAAGGCAAACCTGAATTTGGTGCTCATTGAAGAGACCAAGAAAGAAGCAATTGAGTTGGACATTATCAAAGCTTTTTGGAGCTCTAAGGACATTGGATGGATTGATGTTGAAGCCTATGGAAAATCAGGGGGAATGCTCACGATGTGGGAAGAAAGTGAAGTATCAGTCCTAGAATCCCTTAAAGGAGGATACTCACTCTCGGTTAAATGCAAAACATTAAGCAAAAAAGTGTGTTGGGTGACTAATATCTACAGACCTACACCTACCGATTACAAAGAAAGAAGATTCATATGGCCGGAACTAGCTTCTCTCTCAGCTTACTGCACAGAGGACCAAAGGTATGAGGAGATTTAATAAATTCATAGAAATTGCACATCTCTTGGAAATCCCACTCTCAAATGGTCGCTTTACTTGGTCAAGAGAAGGAAGAGGTATGTCTTGTTCACTGTTGGACACATTTCTTGTATCCAACAACTGGGAGGAGGCTTTGGAAGACACAAGAGTGACAAGCCAAGCAAGATTATACTCAGATCATTTTCCCATCCTATTAACAGCAGGTGTATTTGAAATGGGACCCTCTCCATTTCGATTTTGTCATAGTTGGCTACTAAATCATCAGAATTGTAGAATCATTGAAAGATCCATAGTCATGAGCAATCATCATGGATGGGCAGGCTTCATTATATTCTCAAAATTAAGATCAATAAAAGAATCAGTGAAAAAGAGGCAAACGGAGTATCGTGGAAAGCAACGGATGCAGGAAGAGAAAATATTAGAATTTCTTGGCCAAGAAGAATCTAGAGCTGAATCAATAGATACCCCCTCAATAGAGATGGATATGAGATCCTCCCTCAAGGCTGAGTTGATGAGCATCTATAGAGTTGAGGAAAGGAACCTTATTCAAAAAAGTAAACTCAACTAG

mRNA sequence

ATGGAAGTAGTTAGTTGCAAGATCAATGGAATTTTCTTCTGCACTTGGTTCGAAGATGGGAACTTCATAGTCGAAGATATGGAATCGAATTCTTCTGTTTTTGCACCAGATAAACAGAGCGAGTACCATTGCTGGATCCGAAAGGAAAATGAAGTGTTTAAGGAAGATTTTGCCAACTTGTGGGTTGTATCAAGACTATTCGCGTTCGATGAATGGAAAGATATTGTCAGATTTTTGGAAGATTTTTATCAAATCAAGGTCAGTATTAACCCTCTGTTTGCCGATAAGGCTCTGATTAAAGTATCTCAATGTAATTTAAAAGAGATAATCGAAACGCCTGGAAAATGGTTTGACTATCGTAAATTCCATCTTCTATTTGAAAAATGGAATTCAATTCAAGATAGTAGGCCTACTTGTATCAAAGGTTATGGTGGATGGTTGGTTATAAGAAATCTGCCGTTGGAATATTGGAACAGAGCCACCTTTGAAGCCATCGGCTCCCACTTTGGAGTAGCAAAGGATGAAGATGTTAGTTGTATTTTATCAAGCTGCAACAGAAAAGACCGAAATGTGATCTTATCGTCGGAGAAGATATCAAAAAGGTCTGAGCTCGACGAAGATGCTGAGCCTGCGTCAAAGAAGACTGAGGAGACTCAGCTAAACGAGCCTGAAACAGAGGACTCACTTAATGAGGATCTCAACAGGCTGTTTCAAGCCACGGAAGATTTTGTTAGCAGAGCATCCGAAGAAGCTGTCGTTTCCCAACGTCCAAAGACCAAGAAAGAAGCAATTGAGTTGGACATTATCAAAGCTTTTTGGAGCTCTAAGGACATTGGATGGATTGATGTTGAAGCCTATGGAAAATCAGGGGGAATGCTCACGATGTGGGAAGAAAGTGAAGTATCAGTCCTAGAATCCCTTAAAGGAGGATACTCACTCTCGGTTAAATGCAAAACATTAAGCAAAAAAGTGTGTTGGGTGACTAATATCTACAGACCTACACCTACCGATTACAAAGAAAGAAGATTCATATGGCCGGAACTAGCTTCTCTCTCAGCTTACTGCACAGAGGACCAAAGAGAAGGAAGAGGTATGTCTTGTTCACTGTTGGACACATTTCTTGTATCCAACAACTGGGAGGAGGCTTTGGAAGACACAAGAGTGACAAGCCAAGCAAGATTATACTCAGATCATTTTCCCATCCTATTAACAGCAGGTGTATTTGAAATGGGACCCTCTCCATTTCGATTTTGTCATAGTTGGCTACTAAATCATCAGAATTGTAGAATCATTGAAAGATCCATAGTCATGAGCAATCATCATGGATGGGCAGGCTTCATTATATTCTCAAAATTAAGATCAATAAAAGAATCAGTGAAAAAGAGGCAAACGGAGTATCGTGGAAAGCAACGGATGCAGGAAGAGAAAATATTAGAATTTCTTGGCCAAGAAGAATCTAGAGCTGAATCAATAGATACCCCCTCAATAGAGATGGATATGAGATCCTCCCTCAAGGCTGAGTTGATGAGCATCTATAGAGTTGAGGAAAGGAACCTTATTCAAAAAAGTAAACTCAACTAG

Coding sequence (CDS)

ATGGAAGTAGTTAGTTGCAAGATCAATGGAATTTTCTTCTGCACTTGGTTCGAAGATGGGAACTTCATAGTCGAAGATATGGAATCGAATTCTTCTGTTTTTGCACCAGATAAACAGAGCGAGTACCATTGCTGGATCCGAAAGGAAAATGAAGTGTTTAAGGAAGATTTTGCCAACTTGTGGGTTGTATCAAGACTATTCGCGTTCGATGAATGGAAAGATATTGTCAGATTTTTGGAAGATTTTTATCAAATCAAGGTCAGTATTAACCCTCTGTTTGCCGATAAGGCTCTGATTAAAGTATCTCAATGTAATTTAAAAGAGATAATCGAAACGCCTGGAAAATGGTTTGACTATCGTAAATTCCATCTTCTATTTGAAAAATGGAATTCAATTCAAGATAGTAGGCCTACTTGTATCAAAGGTTATGGTGGATGGTTGGTTATAAGAAATCTGCCGTTGGAATATTGGAACAGAGCCACCTTTGAAGCCATCGGCTCCCACTTTGGAGTAGCAAAGGATGAAGATGTTAGTTGTATTTTATCAAGCTGCAACAGAAAAGACCGAAATGTGATCTTATCGTCGGAGAAGATATCAAAAAGGTCTGAGCTCGACGAAGATGCTGAGCCTGCGTCAAAGAAGACTGAGGAGACTCAGCTAAACGAGCCTGAAACAGAGGACTCACTTAATGAGGATCTCAACAGGCTGTTTCAAGCCACGGAAGATTTTGTTAGCAGAGCATCCGAAGAAGCTGTCGTTTCCCAACGTCCAAAGACCAAGAAAGAAGCAATTGAGTTGGACATTATCAAAGCTTTTTGGAGCTCTAAGGACATTGGATGGATTGATGTTGAAGCCTATGGAAAATCAGGGGGAATGCTCACGATGTGGGAAGAAAGTGAAGTATCAGTCCTAGAATCCCTTAAAGGAGGATACTCACTCTCGGTTAAATGCAAAACATTAAGCAAAAAAGTGTGTTGGGTGACTAATATCTACAGACCTACACCTACCGATTACAAAGAAAGAAGATTCATATGGCCGGAACTAGCTTCTCTCTCAGCTTACTGCACAGAGGACCAAAGAGAAGGAAGAGGTATGTCTTGTTCACTGTTGGACACATTTCTTGTATCCAACAACTGGGAGGAGGCTTTGGAAGACACAAGAGTGACAAGCCAAGCAAGATTATACTCAGATCATTTTCCCATCCTATTAACAGCAGGTGTATTTGAAATGGGACCCTCTCCATTTCGATTTTGTCATAGTTGGCTACTAAATCATCAGAATTGTAGAATCATTGAAAGATCCATAGTCATGAGCAATCATCATGGATGGGCAGGCTTCATTATATTCTCAAAATTAAGATCAATAAAAGAATCAGTGAAAAAGAGGCAAACGGAGTATCGTGGAAAGCAACGGATGCAGGAAGAGAAAATATTAGAATTTCTTGGCCAAGAAGAATCTAGAGCTGAATCAATAGATACCCCCTCAATAGAGATGGATATGAGATCCTCCCTCAAGGCTGAGTTGATGAGCATCTATAGAGTTGAGGAAAGGAACCTTATTCAAAAAAGTAAACTCAACTAG

Protein sequence

MEVVSCKINGIFFCTWFEDGNFIVEDMESNSSVFAPDKQSEYHCWIRKENEVFKEDFANLWVVSRLFAFDEWKDIVRFLEDFYQIKVSINPLFADKALIKVSQCNLKEIIETPGKWFDYRKFHLLFEKWNSIQDSRPTCIKGYGGWLVIRNLPLEYWNRATFEAIGSHFGVAKDEDVSCILSSCNRKDRNVILSSEKISKRSELDEDAEPASKKTEETQLNEPETEDSLNEDLNRLFQATEDFVSRASEEAVVSQRPKTKKEAIELDIIKAFWSSKDIGWIDVEAYGKSGGMLTMWEESEVSVLESLKGGYSLSVKCKTLSKKVCWVTNIYRPTPTDYKERRFIWPELASLSAYCTEDQREGRGMSCSLLDTFLVSNNWEEALEDTRVTSQARLYSDHFPILLTAGVFEMGPSPFRFCHSWLLNHQNCRIIERSIVMSNHHGWAGFIIFSKLRSIKESVKKRQTEYRGKQRMQEEKILEFLGQEESRAESIDTPSIEMDMRSSLKAELMSIYRVEERNLIQKSKLN

Homology

[Close]

BLAST of Clc02G12180 vs. NCBI nr
Match: TYJ98683.1 (hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 4.5e-41
Identity = 97/241 (40.25%), Postives = 134/241 (55.60%), Query Frame = 0


Query: 258 KTKKEAIELDIIKAFWSSKDIGWIDVEAYGKSGGMLTMWEESEVSVLESLKGGYSLSVKC 317
           + + + I++ +IK+ WSSKDIGW  VE++G+ GG+LTMW+ S++ V+E+LKGGYSLS+  
Sbjct: 76  RNQGQEIDIALIKSLWSSKDIGWELVESFGRFGGILTMWDMSKIKVVETLKGGYSLSINS 135

Query: 318 KTLSKKVCWVTNIYRPTPTDYKERRFIWPELASLSAYCT--------------------- 377
            T  KK CW+TN+Y   P DY+ERRF+W  L SLS YCT                     
Sbjct: 136 ITSCKKSCWITNVY--GPYDYEERRFVWLVLVSLSGYCTGAWCIGGKCNITRWAHECFPL 195

Query: 378 EDQ-----------------------------REGRGMSCSLLDTFLVSNNWEEALEDTR 437
           E Q                             REG  +S SLLD F +   W+E  E++R
Sbjct: 196 EKQTRGMRQFNNPIDSLNIWELPLQNGRCTWSREGSSISRSLLDPFFIDKEWDEISENSR 255

Query: 438 VTSQARLYSDHFPILLTAGVFEMGPSPFRFCHSWLLNHQNCRIIERSIVMSNHHGWAGFI 449
           V  +A   SDHFP+LL AG  + GPSPFRF +SWL   +  RII+    +++   WAGF+
Sbjct: 256 VGRKAHTISDHFPLLLEAGSIKWGPSPFRFSNSWLPFSECNRIIKEVWNITSITDWAGFV 314

[Close]

BLAST of Clc02G12180 vs. NCBI nr
Match: XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-38
Identity = 82/160 (51.25%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 367 CSLLDTFLVSNNWEEALEDTRVTSQARLYSDHFPILLTAGVFEMGPSPFRFCHSWLLNHQ 426
           CS   + LVS NW+E  ED+RV+ QAR  SDHFP+L  AG FE GPSPFRFC+SWL N +
Sbjct: 52  CSTKASPLVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKE 111

Query: 427 NCRIIERSIVMSNHHGWAGFIIFSKLRSIKESVKKRQTEYRGKQRMQEEKILEFLGQEES 486
            CRIIE S ++     WAGF ++S+LR +K+SVK+   E+   Q+++EE +L+ + +++ 
Sbjct: 112 CCRIIENSSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDL 171

Query: 487 RAESIDTPSIEMDMRSSLKAELMSIYRVEERNLIQKSKLN 527
           +A++++  S E D+R SLKA+L+S+Y+ EER+LIQKSKLN
Sbjct: 172 QADTLENFSAEEDVRVSLKADLLSLYQAEERDLIQKSKLN 211

[Close]

BLAST of Clc02G12180 vs. NCBI nr
Match: XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-38
Identity = 82/160 (51.25%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 367 CSLLDTFLVSNNWEEALEDTRVTSQARLYSDHFPILLTAGVFEMGPSPFRFCHSWLLNHQ 426
           CS   + LVS NW+E  ED+RV+ QAR  SDHFP+L  AG FE GPSPFRFC+SWL N +
Sbjct: 52  CSTKASPLVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKE 111

Query: 427 NCRIIERSIVMSNHHGWAGFIIFSKLRSIKESVKKRQTEYRGKQRMQEEKILEFLGQEES 486
            CRIIE S ++     WAGF ++S+LR +K+SVK+   E+   Q+++EE +L+ + +++ 
Sbjct: 112 CCRIIENSSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDL 171

Query: 487 RAESIDTPSIEMDMRSSLKAELMSIYRVEERNLIQKSKLN 527
           +A++++  S E D+R SLKA+L+S+Y+ EER+LIQKSKLN
Sbjct: 172 QADTLENFSAEEDVRVSLKADLLSLYQAEERDLIQKSKLN 211

[Close]

BLAST of Clc02G12180 vs. NCBI nr
Match: XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])

HSP 1 Score: 170.2 bits (430), Expect = 4.6e-38
Identity = 82/160 (51.25%), Postives = 118/160 (73.75%), Query Frame = 0


Query: 367 CSLLDTFLVSNNWEEALEDTRVTSQARLYSDHFPILLTAGVFEMGPSPFRFCHSWLLNHQ 426
           CS   + LVS NW+E  ED+RV+ QAR  SDHFP+L  AG FE GPSPFRFC+SWL N +
Sbjct: 52  CSTKASPLVSQNWDEFFEDSRVSRQARTISDHFPLLFEAGAFEWGPSPFRFCNSWLKNKE 111

Query: 427 NCRIIERSIVMSNHHGWAGFIIFSKLRSIKESVKKRQTEYRGKQRMQEEKILEFLGQEES 486
            CRIIE S ++     WAGF ++S+LR +K+SVK+   E+   Q+++EE +L+ + +++ 
Sbjct: 112 CCRIIENSSLIKGQQDWAGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDL 171

Query: 487 RAESIDTPSIEMDMRSSLKAELMSIYRVEERNLIQKSKLN 527
           +A++++  S E D+R SLKA+L+S+Y+ EER+LIQKSKLN
Sbjct: 172 QADTLENFSAEEDVRVSLKADLLSLYQAEERDLIQKSKLN 211

[Close]

BLAST of Clc02G12180 vs. NCBI nr
Match: KAA0063979.1 (hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 146.7 bits (369), Expect = 5.5e-31
Identity = 74/201 (36.82%), Postives = 105/201 (52.24%), Query Frame = 0


Query: 1   MEVVSCKINGIFFCTWFEDGNFIVEDMESNSSVFAPDK-------------QSEYHCWIR 60
           MEV S KI    +C W +  +F +ED++   ++                  Q E HC+  
Sbjct: 1   MEVRSRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFL 60

Query: 61  KE-------NEVFKEDFANLWVV-----------SRLFAFDEWKDIVRFLEDFYQIKVSI 120
           K          + K   +  W+V             LF FD+W +I  FLED +Q+K   
Sbjct: 61  KNGRDTDGTTRLTKFRRSPEWIVRCVARNSSVFNPLLFTFDDWNEISLFLEDLFQVKNIS 120

Query: 121 NPLFADKALIKVSQCNLKEIIETPGKWFDYRKFHLLFEKWNSIQDSRPTCIKGYGGWLVI 171
           NPLFADKA++K+ Q N++++    GKW+DY K+HLLFEKW   + S P+ IKG+ GWL I
Sbjct: 121 NPLFADKAIVKIKQGNIEDLTINKGKWYDYGKYHLLFEKWGEAKRSMPSLIKGFEGWLSI 180

[Close]

BLAST of Clc02G12180 vs. ExPASy TrEMBL
Match: A0A5D3BHE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00120 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.2e-41
Identity = 97/241 (40.25%), Postives = 134/241 (55.60%), Query Frame = 0


Query: 258 KTKKEAIELDIIKAFWSSKDIGWIDVEAYGKSGGMLTMWEESEVSVLESLKGGYSLSVKC 317
           + + + I++ +IK+ WSSKDIGW  VE++G+ GG+LTMW+ S++ V+E+LKGGYSLS+  
Sbjct: 76  RNQGQEIDIALIKSLWSSKDIGWELVESFGRFGGILTMWDMSKIKVVETLKGGYSLSINS 135

Query: 318 KTLSKKVCWVTNIYRPTPTDYKERRFIWPELASLSAYCT--------------------- 377
            T  KK CW+TN+Y   P DY+ERRF+W  L SLS YCT                     
Sbjct: 136 ITSCKKSCWITNVY--GPYDYEERRFVWLVLVSLSGYCTGAWCIGGKCNITRWAHECFPL 195

Query: 378 EDQ-----------------------------REGRGMSCSLLDTFLVSNNWEEALEDTR 437
           E Q                             REG  +S SLLD F +   W+E  E++R
Sbjct: 196 EKQTRGMRQFNNPIDSLNIWELPLQNGRCTWSREGSSISRSLLDPFFIDKEWDEISENSR 255

Query: 438 VTSQARLYSDHFPILLTAGVFEMGPSPFRFCHSWLLNHQNCRIIERSIVMSNHHGWAGFI 449
           V  +A   SDHFP+LL AG  + GPSPFRF +SWL   +  RII+    +++   WAGF+
Sbjct: 256 VGRKAHTISDHFPLLLEAGSIKWGPSPFRFSNSWLPFSECNRIIKEVWNITSITDWAGFV 314

[Close]

BLAST of Clc02G12180 vs. ExPASy TrEMBL
Match: A0A5A7VEL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G001380 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.6e-31
Identity = 74/201 (36.82%), Postives = 105/201 (52.24%), Query Frame = 0


Query: 1   MEVVSCKINGIFFCTWFEDGNFIVEDMESNSSVFAPDK-------------QSEYHCWIR 60
           MEV S KI    +C W +  +F +ED++   ++                  Q E HC+  
Sbjct: 1   MEVRSRKIAKSIYCIWSDKVHFHIEDVDFRKNLRVSKNQLRWFIAAMLDLVQDEEHCFFL 60

Query: 61  KE-------NEVFKEDFANLWVV-----------SRLFAFDEWKDIVRFLEDFYQIKVSI 120
           K          + K   +  W+V             LF FD+W +I  FLED +Q+K   
Sbjct: 61  KNGRDTDGTTRLTKFRRSPEWIVRCVARNSSVFNPLLFTFDDWNEISLFLEDLFQVKNIS 120

Query: 121 NPLFADKALIKVSQCNLKEIIETPGKWFDYRKFHLLFEKWNSIQDSRPTCIKGYGGWLVI 171
           NPLFADKA++K+ Q N++++    GKW+DY K+HLLFEKW   + S P+ IKG+ GWL I
Sbjct: 121 NPLFADKAIVKIKQGNIEDLTINKGKWYDYGKYHLLFEKWGEAKRSMPSLIKGFEGWLSI 180

[Close]

BLAST of Clc02G12180 vs. ExPASy TrEMBL
Match: A0A5A7UR38 (Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002280 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.7e-26
Identity = 58/101 (57.43%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 360 REGRGMSCSLLDTFLVSNNWEEALEDTRVTSQARLYSDHFPILLTAGVFEMGPSPFRFCH 419
           REGR +S SLLD FLV+ +W+E+  DTR + + RL SDH PILL AG FE GPSPFRFC+
Sbjct: 27  REGRSVSRSLLDRFLVTADWDESFADTRASRKERLTSDHCPILLEAGAFEWGPSPFRFCN 86

Query: 420 SWLLNHQNCRIIERSIVMSNHHGWAGFIIFSKLRSIKESVK 461
           SWLL+ +  +II  S+   NH  W GF+I+SKLRS+K ++K
Sbjct: 87  SWLLDKRCWQIITNSLTSGNHQEWVGFVIYSKLRSLKSTLK 127

[Close]

BLAST of Clc02G12180 vs. ExPASy TrEMBL
Match: A0A5A7T996 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00480 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.7e-26
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 75  IVRFLEDFYQIKVSINPLFADKALIKVSQCNLKEIIETPGKWFDYRKFHLLFEKWNSIQD 134
           I+ FLED +++K++INP F ++A  K++   ++ ++ T  KWF+Y KFHLLFEKW+ I  
Sbjct: 168 IIGFLEDLFEVKITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINH 227

Query: 135 SRPTCIKGYGGWLVIRNLPLEYWNRATFEAIGSHFG 171
           SRP+ IKG+ GWL I+NLPL+ W RA FE IG+HFG
Sbjct: 228 SRPSSIKGFRGWLSIKNLPLDLWRRAIFEVIGAHFG 263

[Close]

BLAST of Clc02G12180 vs. ExPASy TrEMBL
Match: A0A5D3E3A5 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00110 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.7e-26
Identity = 51/96 (53.12%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 75  IVRFLEDFYQIKVSINPLFADKALIKVSQCNLKEIIETPGKWFDYRKFHLLFEKWNSIQD 134
           I+ FLED +++K++INP F ++A  K++   ++ ++ T  KWF+Y KFHLLFEKW+ I  
Sbjct: 168 IIGFLEDLFEVKITINPFFDNRATNKINHGKIENLVVTQDKWFNYGKFHLLFEKWDVINH 227

Query: 135 SRPTCIKGYGGWLVIRNLPLEYWNRATFEAIGSHFG 171
           SRP+ IKG+ GWL I+NLPL+ W RA FE IG+HFG
Sbjct: 228 SRPSSIKGFRGWLSIKNLPLDLWRRAIFEVIGAHFG 263

The following BLAST results are available for this feature:

BLAST of Clc02G12180 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98683.1	4.5e-41	40.25	hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]	[more]
XP_038884536.1	4.6e-38	51.25	DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]	[more]
XP_038884537.1	4.6e-38	51.25	DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]	[more]
XP_038884535.1	4.6e-38	51.25	DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]	[more]
KAA0063979.1	5.5e-31	36.82	hypothetical protein E6C27_scaffold616G001380 [Cucumis melo var. makuwa]	[more]

BLAST of Clc02G12180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G12180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BHE3	2.2e-41	40.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VEL7	2.6e-31	36.82	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UR38	9.7e-26	57.43	Transposon TX1 uncharacterized OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7T996	9.7e-26	53.13	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G...	[more]
A0A5D3E3A5	9.7e-26	53.13	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold8466...	[more]

BLAST of Clc02G12180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..228
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 268..404

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G12180.1	Clc02G12180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0016787	hydrolase activity