Clc02G11800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G11800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein CMSS1
Location	ClcChr02: 23038081 .. 23039049 (-)
RNA-Seq Expression	Clc02G11800
Synteny	Clc02G11800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCCATGGAGAATAGATTGCCAACGCATAGTCCTGCTTAAGAAGTCGTCAACGCATCTACAGGTTGTTTGCGTTCCTGCGTTAAAACATGCATTTTAGGCTAAAAAAGTTATAAAATAATTATTTTCATCAAATTGCCGCATGATTCTCTATTTAATCTCTATTTTTCTAAGGGAAAGACTATAATAACTTGTATTTTTACAAGTTATCACTGGGGCTGGGAGGGAAGTTAAGACTTGTAGATTGAAGATGTTGGCACTTTTGACAACTAGTCAGATTCTTCACCATTGGAGCTTCGGCGTCATTTCATCTCCCGACAACAAAGCCCAAGCTTCCTTAGGAAATTCTGAACCATTTCATCATTTGTTCGTCTGCTTCTTGTGGAGCACTATCAATGTCTTTCAGAAATGCAGCATCCATAGCGTTCGATCCATCTGCATCTCACTCCACTCGCTATCAAATGTAAGAACTAATATATGATCTATAAAAATGGTAGGTTATTTTGCGAGTTAGATGAAATGTACTGTATGTTCAAAGGGAGTTTGTACAACTTGAATTTGTGTTTGTGTTTTTTATATGTTCATCAAAATTCACTTTTCAATTTGTTAGTTCTCTTGGGCAGATGATCAATAACCCAAGGCCTAATTAGCATTTTGTGAGTGTTTATAATTTCTTTTGGCATTCTAATTAGCCGTTTTCTTTTAGTAAAATTGTCTTTCAAGTTTGTTTGATAGAGCCTAATTGTTTGCATTTTTCTGTAATGTGTGAGAATTTGTCTGATTTTTGTTATGATTGGAGAATTTTTTAGATAGATGCATTCTAGGTCCTTCTGATAGTTCAGTTCCAGATGATAAAAGCTTGGTGAAACATATCAAGGAGGCTTTTGAGTCATCGTGGAAAGAACTCTTTGAAGGAACGACTGGACCTAGGAGTCCTGCTGTTCTTATAATCAACAGATGCACTTAG

mRNA sequence

ATGCGTCCATGGAGAATAGATTGCCAACGCATAGTCCTGCTTAAGAAGTCGTCAACGCATCTACAGATTCTTCACCATTGGAGCTTCGGCGTCATTTCATCTCCCGACAACAAAGCCCAAGCTTCCTTAGGAAATTCTGAACCATTTCATCATTTGTTCGTCTGCTTCTTGTGGAGCACTATCAATGTCTTTCAGAAATGCAGCATCCATAGCGTTCGATCCATCTGCATCTCACTCCACTCGCTATCAAATAATTTTTTAGATAGATGCATTCTAGGTCCTTCTGATAGTTCAGTTCCAGATGATAAAAGCTTGGTGAAACATATCAAGGAGGCTTTTGAGTCATCGTGGAAAGAACTCTTTGAAGGAACGACTGGACCTAGGAGTCCTGCTGTTCTTATAATCAACAGATGCACTTAG

Coding sequence (CDS)

ATGCGTCCATGGAGAATAGATTGCCAACGCATAGTCCTGCTTAAGAAGTCGTCAACGCATCTACAGATTCTTCACCATTGGAGCTTCGGCGTCATTTCATCTCCCGACAACAAAGCCCAAGCTTCCTTAGGAAATTCTGAACCATTTCATCATTTGTTCGTCTGCTTCTTGTGGAGCACTATCAATGTCTTTCAGAAATGCAGCATCCATAGCGTTCGATCCATCTGCATCTCACTCCACTCGCTATCAAATAATTTTTTAGATAGATGCATTCTAGGTCCTTCTGATAGTTCAGTTCCAGATGATAAAAGCTTGGTGAAACATATCAAGGAGGCTTTTGAGTCATCGTGGAAAGAACTCTTTGAAGGAACGACTGGACCTAGGAGTCCTGCTGTTCTTATAATCAACAGATGCACTTAG

Protein sequence

MRPWRIDCQRIVLLKKSSTHLQILHHWSFGVISSPDNKAQASLGNSEPFHHLFVCFLWSTINVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWKELFEGTTGPRSPAVLIINRCT

Homology

[Close]

BLAST of Clc02G11800 vs. NCBI nr
Match: XP_038906109.1 (protein CMS1 isoform X3 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-11
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 88  DRCILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 137
           DRCILGP +SSV DDK+LVKHIKEAF SSWKE      LFEG T P SPAVLII+
Sbjct: 91  DRCILGPPESSVQDDKTLVKHIKEAFGSSWKEVLCKGKLFEGKTEPGSPAVLIIS 145

[Close]

BLAST of Clc02G11800 vs. NCBI nr
Match: XP_038906095.1 (protein CMSS1 isoform X1 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-11
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 88  DRCILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 137
           DRCILGP +SSV DDK+LVKHIKEAF SSWKE      LFEG T P SPAVLII+
Sbjct: 91  DRCILGPPESSVQDDKTLVKHIKEAFGSSWKEVLCKGKLFEGKTEPGSPAVLIIS 145

[Close]

BLAST of Clc02G11800 vs. NCBI nr
Match: XP_038906103.1 (protein CMSS1 isoform X2 [Benincasa hispida])

HSP 1 Score: 77.8 bits (190), Expect = 8.2e-11
Identity = 40/55 (72.73%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 88  DRCILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 137
           DRCILGP +SSV DDK+LVKHIKEAF SSWKE      LFEG T P SPAVLII+
Sbjct: 91  DRCILGPPESSVQDDKTLVKHIKEAFGSSWKEVLCKGKLFEGKTEPGSPAVLIIS 145

[Close]

BLAST of Clc02G11800 vs. NCBI nr
Match: KAA0044636.1 (protein CMSS1 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.8e-10
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 61  INVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWK-- 120
           +N FQ  + + V+   + L S+     DRCILGP +SSV DDKSLVKHIKEAF SSWK  
Sbjct: 67  LNEFQ--TANDVQVSSLELESMK----DRCILGPPESSVQDDKSLVKHIKEAFGSSWKEV 126

Query: 121 ----ELFEGTTGPRSPAVLIIN 137
               EL EG T P SPAVLII+
Sbjct: 127 LCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Clc02G11800 vs. NCBI nr
Match: XP_004152079.1 (protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 61  INVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWK-- 120
           +N FQ  +   V S+ +      ++  DRCILGP +SSV DDKSLVKH+KEAF SSWK  
Sbjct: 67  LNEFQTANDVQVSSLEL------DSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 126

Query: 121 ----ELFEGTTGPRSPAVLIIN 137
               EL EG T P SPAVLII+
Sbjct: 127 LCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Clc02G11800 vs. ExPASy TrEMBL
Match: A0A5A7TR86 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.9e-11
Identity = 46/82 (56.10%), Postives = 54/82 (65.85%), Query Frame = 0


Query: 61  INVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWK-- 120
           +N FQ  + + V+   + L S+     DRCILGP +SSV DDKSLVKHIKEAF SSWK  
Sbjct: 67  LNEFQ--TANDVQVSSLELESMK----DRCILGPPESSVQDDKSLVKHIKEAFGSSWKEV 126

Query: 121 ----ELFEGTTGPRSPAVLIIN 137
               EL EG T P SPAVLII+
Sbjct: 127 LCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Clc02G11800 vs. ExPASy TrEMBL
Match: A0A0A0KUA9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 44/82 (53.66%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 61  INVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWK-- 120
           +N FQ  +   V S+ +      ++  DRCILGP +SSV DDKSLVKH+KEAF SSWK  
Sbjct: 67  LNEFQTANDVQVSSLEL------DSMKDRCILGPPESSVQDDKSLVKHVKEAFGSSWKEI 126

Query: 121 ----ELFEGTTGPRSPAVLIIN 137
               EL EG T P SPAVLII+
Sbjct: 127 LCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Clc02G11800 vs. ExPASy TrEMBL
Match: A0A5D3CZG6 (Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-10
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 61  INVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWK-- 120
           +N FQ  + + V+   + L S+     DRCILGP +SSV DDKSLVKHIKEA  SSWK  
Sbjct: 67  LNEFQ--TANDVQVSSLELESMK----DRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 126

Query: 121 ----ELFEGTTGPRSPAVLIIN 137
               EL EG T P SPAVLII+
Sbjct: 127 LCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Clc02G11800 vs. ExPASy TrEMBL
Match: A0A1S3BYM0 (protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.4e-10
Identity = 45/82 (54.88%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 61  INVFQKCSIHSVRSICISLHSLSNNFLDRCILGPSDSSVPDDKSLVKHIKEAFESSWK-- 120
           +N FQ  + + V+   + L S+     DRCILGP +SSV DDKSLVKHIKEA  SSWK  
Sbjct: 67  LNEFQ--TANDVQVSSLELESMK----DRCILGPPESSVQDDKSLVKHIKEALGSSWKEV 126

Query: 121 ----ELFEGTTGPRSPAVLIIN 137
               EL EG T P SPAVLII+
Sbjct: 127 LCKGELLEGRTEPGSPAVLIIS 142

[Close]

BLAST of Clc02G11800 vs. ExPASy TrEMBL
Match: A0A6J1GWA7 (protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-09
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 89  RCILGPSDSSVPDDKSLVKHIKEAFESSWKE------LFEGTTGPRSPAVLIIN 137
           RCILGP  SS+ D+K+LVKHIKEAF SSWKE      L EG T P SPAVLII+
Sbjct: 96  RCILGPPQSSIQDEKTLVKHIKEAFGSSWKEVLCKGKLLEGETAPGSPAVLIIS 149

The following BLAST results are available for this feature:

BLAST of Clc02G11800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906109.1	8.2e-11	72.73	protein CMS1 isoform X3 [Benincasa hispida]	[more]
XP_038906095.1	8.2e-11	72.73	protein CMSS1 isoform X1 [Benincasa hispida]	[more]
XP_038906103.1	8.2e-11	72.73	protein CMSS1 isoform X2 [Benincasa hispida]	[more]
KAA0044636.1	1.8e-10	56.10	protein CMSS1 [Cucumis melo var. makuwa]	[more]
XP_004152079.1	2.4e-10	53.66	protein CMSS1 [Cucumis sativus] >KGN53128.1 hypothetical protein Csa_014754 [Cuc...	[more]

BLAST of Clc02G11800 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G11800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TR86	8.9e-11	56.10	Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003890 ...	[more]
A0A0A0KUA9	1.2e-10	53.66	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017160 PE=4 SV=1	[more]
A0A5D3CZG6	4.4e-10	54.88	Protein CMSS1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00910 ...	[more]
A0A1S3BYM0	4.4e-10	54.88	protein CMSS1 OS=Cucumis melo OX=3656 GN=LOC103494501 PE=4 SV=1	[more]
A0A6J1GWA7	3.7e-09	66.67	protein CMS1 OS=Cucurbita moschata OX=3662 GN=LOC111458074 PE=4 SV=1	[more]

BLAST of Clc02G11800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G11800.1	Clc02G11800.1	mRNA