Clc02G10870 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G10870
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ty3/gypsy retrotransposon protein
Location	ClcChr02: 18277940 .. 18279318 (-)
RNA-Seq Expression	Clc02G10870
Synteny	Clc02G10870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTGAACTTGTGGCCATTGTCCTATCCGTTCAAAAGTGGAGACTATCTATTGGGAAGGAAATTCACTGTGATTTCTGATCATAAGGCTTTAAAATTCCTTCTAGAACAACGAGAGGTCCGACCTCAGTTTCAACTATGGCTATTGAAACTTCTGGGGTACGACTTCAAGATCAATCGAGGTTGAACAATAAGGCTGTTGATGCTTTATCCAGTATGCGGCCAACACAGAATTAATGACAATAGTTGCCCTGCTTTAATTGACGTGGAACAAGTACAACAAGAAGTAAAAGGCAATGAAGAATTACAAGCCATAGTGCAAAAGCTGAAGGTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTCCCATAATTCTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTTAGGAGGTCATTCAAGGTTCTTAAGAACTTATAAGCAGTTGTCCGAAGAATTATATTGGAAGGGAATGAAGGAAGATGTGAAGAAGCATGTGGCAGAATGCATTATTTGTCAGAGAAACAAGTACAAATCAGTAATTCCAGCTTGGTTATTACAACCTCTTCCAATTCCTGATCGAGTATGGGATGACCTATTTATGGATTTTGTGGAAGGTTACCTAAATCCCATAGATTCAATACCTTAATGGTCATGGTGGATCGTCTCGGCAAGTATAGTCATTTCATTCCCTTAAGTCATCTGTTTTCAGTTAAGAAGGTGGCAATAAGTATTCATTTGTGAAGTTATAAGACTACATGGATTCCTAAGATCCATAGTTTCGAATAGAGATAAAATCTCTGTCAGTAGTTTTTGGACAGAGCTTTTTGCCATACATGGCACAACTGTAAAGAGGAGTTTTGTGTTCCATCCGCAAACGGATGGCCAAACGGGAAAAGTTAATAGGTGTGTGGAGACTTATTTACGATGCTTTTGTAATGAACAACCAAAACAGTGGTATAGCTGGATTCCTTTGGCAGAATATTGGTATAATACGACATTTCACATCTTGATAAATGCTACTCCTTATTCAGTGTTGTATGGACGACCCCCTCCTCCTTTGGTGTCATATGGCGATCGCAAAACAACAAATGACACATTGGAACATCCATTGATTGATAGAGACAAAGCGTTGGTGGCTCTAAAGGAACATTTGGCTTTAGCCCAAAATAGAATGAAGAAGTTTGCTGATCAACGTCGTCGATTTTATGGACCTTATATGGTACTGGGGAGAGTGGGAGCAATGGCTTACAAATTGGACTTACCAAGAGAGGCCACGATCCACAATGTTTTCCATGTATCCCAGTTCAAGAAATGCGTGGGCACCCGAGACAGAGTATTATCAACCTCCTAA

mRNA sequence

ATGAACGTGAACTTGTGGCCATTGTCCTATCCGTTCAAAAGTGGAGACTATCTATTGGGAAGGAAATTCACTGTGATTTCTGATCATAAGGCTTTAAAATTCCTTCTAGAACAACGAGAGGTCCGACCTCAGTTTCAACTATGGCTATTGAAACTTCTGGGGTACGACTTCAAGATCAATCGAGGTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTCCCATAATTCTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTTAGGAGGTCATTCAAGGTTCTTAAGAACTTATAAGCAGTTGTCCGAAGAATTATATTGGAAGGGAATGAAGGAAGATGTGAAGAAGCATGTGGCAGAATGCATTATTTGTCAGAGAAACAAGTACAAATCAGTAATTCCAGCTTGGTTATTACAACCTCTTCCAATTCCTGATCGAGTATGGGATGACCTATTTATGGATTTTGTGGAAGTTATAAGACTACATGGATTCCTAAGATCCATAGTTTCGAATAGAGATAAAATCTCTGTCAGTAGTTTTTGGACAGAGCTTTTTGCCATACATGGCACAACTGTAAAGAGGAGTTTTGTGTTCCATCCGCAAACGGATGGCCAAACGGGAAAAGTTAATAGGTGTGTGGAGACTTATTTACGATGCTTTTGTAATGAACAACCAAAACAGTGGTATAGCTGGATTCCTTTGGCAGAATATTGGTATAATACGACATTTCACATCTTGATAAATGCTACTCCTTATTCAGTGTTGTATGGACGACCCCCTCCTCCTTTGGTGTCATATGGCGATCGCAAAACAACAAATGACACATTGGAACATCCATTGATTGATAGAGACAAAGCGTTGGTGGCTCTAAAGGAACATTTGGCTTTAGCCCAAAATAGAATGAAGAAGTTTGCTGATCAACGTCGTCGATTTTATGGACCTTATATGGTACTGGGGAGAGTGGGAGCAATGGCTTACAAATTGGACTTACCAAGAGAGGCCACGATCCACAATGTTTTCCATGTATCCCAGTTCAAGAAATGCGTGGGCACCCGAGACAGAGTATTATCAACCTCCTAA

Coding sequence (CDS)

ATGAACGTGAACTTGTGGCCATTGTCCTATCCGTTCAAAAGTGGAGACTATCTATTGGGAAGGAAATTCACTGTGATTTCTGATCATAAGGCTTTAAAATTCCTTCTAGAACAACGAGAGGTCCGACCTCAGTTTCAACTATGGCTATTGAAACTTCTGGGGTACGACTTCAAGATCAATCGAGGTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTCCCATAATTCTAGATTCATCCTTGCTCTTTTAACTACCTTCCATGACTCGGTGTTAGGAGGTCATTCAAGGTTCTTAAGAACTTATAAGCAGTTGTCCGAAGAATTATATTGGAAGGGAATGAAGGAAGATGTGAAGAAGCATGTGGCAGAATGCATTATTTGTCAGAGAAACAAGTACAAATCAGTAATTCCAGCTTGGTTATTACAACCTCTTCCAATTCCTGATCGAGTATGGGATGACCTATTTATGGATTTTGTGGAAGTTATAAGACTACATGGATTCCTAAGATCCATAGTTTCGAATAGAGATAAAATCTCTGTCAGTAGTTTTTGGACAGAGCTTTTTGCCATACATGGCACAACTGTAAAGAGGAGTTTTGTGTTCCATCCGCAAACGGATGGCCAAACGGGAAAAGTTAATAGGTGTGTGGAGACTTATTTACGATGCTTTTGTAATGAACAACCAAAACAGTGGTATAGCTGGATTCCTTTGGCAGAATATTGGTATAATACGACATTTCACATCTTGATAAATGCTACTCCTTATTCAGTGTTGTATGGACGACCCCCTCCTCCTTTGGTGTCATATGGCGATCGCAAAACAACAAATGACACATTGGAACATCCATTGATTGATAGAGACAAAGCGTTGGTGGCTCTAAAGGAACATTTGGCTTTAGCCCAAAATAGAATGAAGAAGTTTGCTGATCAACGTCGTCGATTTTATGGACCTTATATGGTACTGGGGAGAGTGGGAGCAATGGCTTACAAATTGGACTTACCAAGAGAGGCCACGATCCACAATGTTTTCCATGTATCCCAGTTCAAGAAATGCGTGGGCACCCGAGACAGAGTATTATCAACCTCCTAA

Protein sequence

MNVNLWPLSYPFKSGDYLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKINRGRFILALLTTFHDSVSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFVEVIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQNRMKKFADQRRRFYGPYMVLGRVGAMAYKLDLPREATIHNVFHVSQFKKCVGTRDRVLSTS

Homology

[Close]

BLAST of Clc02G10870 vs. NCBI nr
Match: TYK15071.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.7 bits (1018), Expect = 2.1e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G + L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMAVVTKEIEKDEELQLLIQQLQNNPALEGNYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. NCBI nr
Match: TYK28944.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 2.8e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. NCBI nr
Match: TYJ96663.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 2.8e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. NCBI nr
Match: TYK21035.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 2.8e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. NCBI nr
Match: TYK27058.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 396.4 bits (1017), Expect = 2.8e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-25
Identity = 82/320 (25.62%), Postives = 126/320 (39.38%), Query Frame = 0


Query: 114  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV---------- 173
            WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+          
Sbjct: 943  WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYN 1002

Query: 174  ---------------------------------EVIRLHGFLRSIVSNRDKISVSSFWTE 233
                                              VI   G  + I+++ D I  S  W +
Sbjct: 1003 ALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062

Query: 234  LFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTF 293
                +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   
Sbjct: 1063 FAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAI 1122

Query: 294  HILINATPYSVLY----GRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQN 353
            H     TP+ +++       P  L S+ D+   N        +  +    +KEHL     
Sbjct: 1123 HSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQ------ETIQVFQTVKEHLNTNNI 1182

Query: 354  RMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD 355
            +MKK+ D + +                              F GP+ VL + G   Y+LD
Sbjct: 1183 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1242

[Close]

BLAST of Clc02G10870 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-25
Identity = 82/320 (25.62%), Postives = 126/320 (39.38%), Query Frame = 0


Query: 114  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV---------- 173
            WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+          
Sbjct: 943  WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYN 1002

Query: 174  ---------------------------------EVIRLHGFLRSIVSNRDKISVSSFWTE 233
                                              VI   G  + I+++ D I  S  W +
Sbjct: 1003 ALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062

Query: 234  LFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTF 293
                +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   
Sbjct: 1063 FAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAI 1122

Query: 294  HILINATPYSVLY----GRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQN 353
            H     TP+ +++       P  L S+ D+   N        +  +    +KEHL     
Sbjct: 1123 HSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQ------ETIQVFQTVKEHLNTNNI 1182

Query: 354  RMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD 355
            +MKK+ D + +                              F GP+ VL + G   Y+LD
Sbjct: 1183 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1242

[Close]

BLAST of Clc02G10870 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-25
Identity = 82/320 (25.62%), Postives = 126/320 (39.38%), Query Frame = 0


Query: 114  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV---------- 173
            WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+          
Sbjct: 943  WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYN 1002

Query: 174  ---------------------------------EVIRLHGFLRSIVSNRDKISVSSFWTE 233
                                              VI   G  + I+++ D I  S  W +
Sbjct: 1003 ALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062

Query: 234  LFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTF 293
                +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   
Sbjct: 1063 FAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAI 1122

Query: 294  HILINATPYSVLY----GRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQN 353
            H     TP+ +++       P  L S+ D+   N        +  +    +KEHL     
Sbjct: 1123 HSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQ------ETIQVFQTVKEHLNTNNI 1182

Query: 354  RMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD 355
            +MKK+ D + +                              F GP+ VL + G   Y+LD
Sbjct: 1183 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1242

[Close]

BLAST of Clc02G10870 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-25
Identity = 82/320 (25.62%), Postives = 126/320 (39.38%), Query Frame = 0


Query: 114  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV---------- 173
            WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+          
Sbjct: 943  WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYN 1002

Query: 174  ---------------------------------EVIRLHGFLRSIVSNRDKISVSSFWTE 233
                                              VI   G  + I+++ D I  S  W +
Sbjct: 1003 ALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062

Query: 234  LFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTF 293
                +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   
Sbjct: 1063 FAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAI 1122

Query: 294  HILINATPYSVLY----GRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQN 353
            H     TP+ +++       P  L S+ D+   N        +  +    +KEHL     
Sbjct: 1123 HSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQ------ETIQVFQTVKEHLNTNNI 1182

Query: 354  RMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD 355
            +MKK+ D + +                              F GP+ VL + G   Y+LD
Sbjct: 1183 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1242

[Close]

BLAST of Clc02G10870 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.9e-25
Identity = 82/320 (25.62%), Postives = 126/320 (39.38%), Query Frame = 0


Query: 114  WKGMKEDVKKHVAECIICQRNKYKSVIPAWLLQPLPIPDRVWDDLFMDFV---------- 173
            WKG+++ ++++V  C  CQ NK ++  P   LQP+P  +R W+ L MDF+          
Sbjct: 943  WKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESSGYN 1002

Query: 174  ---------------------------------EVIRLHGFLRSIVSNRDKISVSSFWTE 233
                                              VI   G  + I+++ D I  S  W +
Sbjct: 1003 ALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKD 1062

Query: 234  LFAIHGTTVKRSFVFHPQTDGQTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTF 293
                +   +K S  + PQTDGQT + N+ VE  LRC C+  P  W   I L +  YN   
Sbjct: 1063 FAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAI 1122

Query: 294  HILINATPYSVLY----GRPPPPLVSYGDRKTTNDTLEHPLIDRDKALVALKEHLALAQN 353
            H     TP+ +++       P  L S+ D+   N        +  +    +KEHL     
Sbjct: 1123 HSATQMTPFEIVHRYSPALSPLELPSFSDKTDENSQ------ETIQVFQTVKEHLNTNNI 1182

Query: 354  RMKKFADQRRR------------------------------FYGPYMVLGRVGAMAYKLD 355
            +MKK+ D + +                              F GP+ VL + G   Y+LD
Sbjct: 1183 KMKKYFDMKIQEIEEFQPGDLVMVKRTKTGFLHKSNKLAPSFAGPFYVLQKSGPNNYELD 1242

[Close]

BLAST of Clc02G10870 vs. ExPASy TrEMBL
Match: A0A5D3CT96 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G001230 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 1.0e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G + L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMAVVTKEIEKDEELQLLIQQLQNNPALEGNYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. ExPASy TrEMBL
Match: A0A5D3E325 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00690 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.3e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.3e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. ExPASy TrEMBL
Match: A0A5D3DZK6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00310 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.3e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

[Close]

BLAST of Clc02G10870 vs. ExPASy TrEMBL
Match: A0A5D3DWA9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001670 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 1.3e-106
Identity = 216/484 (44.63%), Postives = 272/484 (56.20%), Query Frame = 0


Query: 17   YLLGRKFTVISDHKALKFLLEQREVRPQFQLWLLKLLGYDFKI----------------- 76
            YLLGR+FT++SD KALKFLLEQREV+PQFQ WL KLLGYDF+I                 
Sbjct: 946  YLLGRRFTIMSDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQPGLQNKAADALSRM 1005

Query: 77   ------------------------------------------NRGRFILALLTTFHDS-- 136
                                                        G++ L   T  +    
Sbjct: 1006 DHSIELKALSTTGIVDMEVVTKEVEKDEELQLLIQQLQNNPALEGKYSLTNGTLMYKGRV 1065

Query: 137  -VSHNSRFILALLTTFHDSVLGGHSRFLRTYKQLSEELYWKGMKEDVKKHVAECIICQRN 196
             +S +S  I +LL TFHDS+LGGHS FLRTYK++S EL+WKGMKED+KK+V +C ICQRN
Sbjct: 1066 VLSKSSSIIPSLLHTFHDSILGGHSGFLRTYKRMSGELFWKGMKEDIKKYVEQCEICQRN 1125

Query: 197  KYKSVIPAWLLQPLPIPDRVWDDLFMDFVE------------------------------ 256
            K ++  PA +LQPLPIPDR+ +D  MDF+E                              
Sbjct: 1126 KSEATKPAGVLQPLPIPDRILEDWTMDFIEGLPKAGGMNVIMVVVDRLSKYAYFVTMKHP 1185

Query: 257  -------------VIRLHGFLRSIVSNRDKISVSSFWTELFAIHGTTVKRSFVFHPQTDG 316
                         ++R HG  +SI+S+RDKI VS+FW ELF    T +KRS  FHPQTDG
Sbjct: 1186 FSAKQVAMEFIDKIVRRHGIPKSIISDRDKIFVSNFWKELFYAMNTILKRSTAFHPQTDG 1245

Query: 317  QTGKVNRCVETYLRCFCNEQPKQWYSWIPLAEYWYNTTFHILINATPYSVLYGRPPPPLV 363
            QT +VN+C+ETYLRCFCNEQP +W+ +IP AE WYNTTFH     TP+  +YGRPPPPL+
Sbjct: 1246 QTERVNQCLETYLRCFCNEQPNKWHQFIPWAELWYNTTFHSSTRTTPFQTVYGRPPPPLI 1305

The following BLAST results are available for this feature:

BLAST of Clc02G10870 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK15071.1	2.1e-106	44.63	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK28944.1	2.8e-106	44.63	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ96663.1	2.8e-106	44.63	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK21035.1	2.8e-106	44.63	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30523.1 Ty3/gyp...	[more]
TYK27058.1	2.8e-106	44.63	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc02G10870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	1.9e-25	25.63	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	1.9e-25	25.63	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	1.9e-25	25.63	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	1.9e-25	25.63	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	1.9e-25	25.63	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Clc02G10870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CT96	1.0e-106	44.63	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3E325	1.3e-106	44.63	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BBH7	1.3e-106	44.63	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DZK6	1.3e-106	44.63	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DWA9	1.3e-106	44.63	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Clc02G10870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 294..314
None	No IPR available	GENE3D	1.10.340.70		coord: 55..135 e-value: 7.2E-12 score: 47.4
None	No IPR available	PANTHER	PTHR46148	FAMILY NOT NAMED	coord: 173..356
None	No IPR available	PANTHER	PTHR46148:SF38	PROTEIN NYNRIN-LIKE	coord: 173..356
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 82..136 e-value: 4.1E-16 score: 58.8
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 16..55 e-value: 6.9E-6 score: 26.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 153..265 e-value: 2.0E-14 score: 55.7
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 147..264

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G10870.1	Clc02G10870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding