Clc02G10670 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G10670
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr02: 16581987 .. 16583672 (+)
RNA-Seq Expression	Clc02G10670
Synteny	Clc02G10670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCGAAGGAGTTAAAGGAACTGAAAGTACAATTGCAAGAATTGATTTACAAGGGGTATGTACGACCTAGTGTGTCGCCGTGGGGAGCACTGGTGTTGTTTGTGAAGAAGAAGGATGGCACACTTAGATTATGTATTGATTACTGTTAGTTGAATAAGGTAACAATACGTAATAAGTATCCATTACCTCGTATTGATGATTTGTTTGACCAACTTAAAGGTGCTTCAGTATTTTCCAAGATTGATCTACGATTTGGATATCATCAGATGAAGATCAAAGGAACAGATATACCAAAGACTGCATTTAGAACGAGGTATGGACATTACGAATTTCTAGTAATGCCTTTTGGATTAACAAATGCTCCGGCTGTATTTATGGACCTCATGAATCGCATATTCCATCCATACCTTGATCAATTCATTGTAGTGTTCATCGATGATATACTAGTATATTCTGGGAATAAGGAAAAGCATACAGAACACCTTCGAGTGGTATTATAGACATTGCGTAATGAGAGATTGTATGCTAAATTCAGTAAATGTGGATTTTGGCTTGACCGTGTTATGTTCCTAGGACATGTGGTGTCGGCCGAAGGGGTAAGTGTAGATCCACAGAAGATAGAGGCAATAGTTAACTAGGAAAGACCTACTAATGTCACAGAAGTTCGTAGTTTTCTGGGACTAGCAGGTTATTATCGCCGATTTGTTGAAGGATTTTCAAAGATAGCACTACCCTTATCAAGCTTAACCAAGAAGGTAGCCAAGTTTGAATGGACAAATGAATGTGAACAGAGTTTTCAAAAGTTGAAGGAAAAATTAGTGTCAGCACCAATATTGACATTGCCTACCCCTAGAATGGAGTTTGAAGTGTATTGCGATGCGTCACGACAGGGGTTAGGATGTGTACTCATGCAGAAGGGAAAAGTGATTGCCTATGCGTCGAGGCAGCTGAAGAAGCACGAATGTAACTATTTGACGCATGATTTGGAGTTGGCAGAAGTTGTGTTAGCCTTGAAAATTTGGCGACATTACTTGTACGGAGAAAGGTGTCGTATTCTTTCCGATCATAAAAGTTTGAAGTATATCTTTGATCAAAAGGAACTAAATTTACGACAAAGAAGATGGATGGAATTGATTAAAGACTATGATTGCTCAATAGAATACCATCCAGGAAAGGCCAATGTGGTAGCCGACGCATTGAGTAGGAAGTCGAGAAAAGTCAAGGCTTCAATGAACGCTATCAATGCGGAATTAACAACAGAGCTTAGGCGTTCAAACGCATCCTTATCGGTGGACGCATTAGGAGGATTGTTTGCGCACTTCCATCTAAGACCTACTTTGACAGAGGAGATTGTTAATAAACAGATGGAAGACTCAATACTTAGAAAAATATTAGAAGAAGTGAAACTTAAGAAAAGAGCGGATTTTGAAATTAGAAATGATGGAACTTTATTGAAACAAGGAAGATTATGCGTTCCTAACGATTTAACATTGAAAAACGTCATTCTAGAGGAAGCTCATAGTTCTGCTTATGCAATGCACCCCGGTAGTACAAAGATGTACAGAACTCTAAGAGGGTATTATTGGTGGCCAGGAATGAAACGAGAAATTGCTGAATGTGTAGCAAGATGCTTGATATGTCAGCAAGTTAAACCAGAAAGACAAAGACCTGGGGACTTTTAA

mRNA sequence

ATGGCAGCGAAGGAGTTAAAGGAACTGAAAGTACAATTGCAAGAATTGATTTACAAGGGGTATGTACGACCTAGTGTGTCGCCGTGGGGAGCACTGGTGTTGTTTGTGAAGAAGAAGGATGGCACACTTAGATTATGTATTGATTACTGTGCTTCAGTATTTTCCAAGATTGATCTACGATTTGGATATCATCAGATGAAGATCAAAGGAACAGATATACCAAAGACTGCATTTAGAACGAGGTATGGACATTACGAATTTCTAGTAATGCCTTTTGGATTAACAAATGCTCCGGCTGTATTTATGGACCTCATGAATCGCATATTCCATCCATACCTTGATCAATTCATTGTAGTGTTCATCGATGATATACTAGTATATTCTGGGAATAAGGAAAAGCATACAGAACACCTTCGAGTGGAAAGACCTACTAATGTCACAGAAGTTCGTAGTTTTCTGGGACTAGCAGGTTATTATCGCCGATTTGTTGAAGGATTTTCAAAGATAGCACTACCCTTATCAAGCTTAACCAAGAAGGTAGCCAAGTTTGAATGGACAAATGAATGTGAACAGAGTTTTCAAAAGTTGAAGGAAAAATTAGTGTCAGCACCAATATTGACATTGCCTACCCCTAGAATGGAGTTTGAAGTGTATTGCGATGCGTCACGACAGGGGTTAGGATGTGTACTCATGCAGAAGGGAAAAGTGATTGCCTATGCGTCGAGGCAGCTGAAGAAGCACGAATGTAACTATTTGACGCATGATTTGGAGTTGGCAGAAGTTGTGTTAGCCTTGAAAATTTGGCGACATTACTTGTACGGAGAAAGGTGTCGTATTCTTTCCGATCATAAAAGTTTGAAGTATATCTTTGATCAAAAGGAACTAAATTTACGACAAAGAAGATGGATGGAATTGATTAAAGACTATGATTGCTCAATAGAATACCATCCAGGAAAGGCCAATGTGGTAGCCGACGCATTGAGTAGGAAGTCGAGAAAAGTCAAGGCTTCAATGAACGCTATCAATGCGGAATTAACAACAGAGCTTAGGCGTTCAAACGCATCCTTATCGGTGGACGCATTAGGAGGATTGTTTGCGCACTTCCATCTAAGACCTACTTTGACAGAGGAGATTGTTAATAAACAGATGGAAGACTCAATACTTAGAAAAATATTAGAAGAAGTGAAACTTAAGAAAAGAGCGGATTTTGAAATTAGAAATGATGGAACTTTATTGAAACAAGGAAGATTATGCGTTCCTAACGATTTAACATTGAAAAACGTCATTCTAGAGGAAGCTCATAGTTCTGCTTATGCAATGCACCCCGGTAGTACAAAGATGTACAGAACTCTAAGAGGGTATTATTGGTGGCCAGGAATGAAACGAGAAATTGCTGAATGTGTAGCAAGATGCTTGATATGTCAGCAAGTTAAACCAGAAAGACAAAGACCTGGGGACTTTTAA

Coding sequence (CDS)

ATGGCAGCGAAGGAGTTAAAGGAACTGAAAGTACAATTGCAAGAATTGATTTACAAGGGGTATGTACGACCTAGTGTGTCGCCGTGGGGAGCACTGGTGTTGTTTGTGAAGAAGAAGGATGGCACACTTAGATTATGTATTGATTACTGTGCTTCAGTATTTTCCAAGATTGATCTACGATTTGGATATCATCAGATGAAGATCAAAGGAACAGATATACCAAAGACTGCATTTAGAACGAGGTATGGACATTACGAATTTCTAGTAATGCCTTTTGGATTAACAAATGCTCCGGCTGTATTTATGGACCTCATGAATCGCATATTCCATCCATACCTTGATCAATTCATTGTAGTGTTCATCGATGATATACTAGTATATTCTGGGAATAAGGAAAAGCATACAGAACACCTTCGAGTGGAAAGACCTACTAATGTCACAGAAGTTCGTAGTTTTCTGGGACTAGCAGGTTATTATCGCCGATTTGTTGAAGGATTTTCAAAGATAGCACTACCCTTATCAAGCTTAACCAAGAAGGTAGCCAAGTTTGAATGGACAAATGAATGTGAACAGAGTTTTCAAAAGTTGAAGGAAAAATTAGTGTCAGCACCAATATTGACATTGCCTACCCCTAGAATGGAGTTTGAAGTGTATTGCGATGCGTCACGACAGGGGTTAGGATGTGTACTCATGCAGAAGGGAAAAGTGATTGCCTATGCGTCGAGGCAGCTGAAGAAGCACGAATGTAACTATTTGACGCATGATTTGGAGTTGGCAGAAGTTGTGTTAGCCTTGAAAATTTGGCGACATTACTTGTACGGAGAAAGGTGTCGTATTCTTTCCGATCATAAAAGTTTGAAGTATATCTTTGATCAAAAGGAACTAAATTTACGACAAAGAAGATGGATGGAATTGATTAAAGACTATGATTGCTCAATAGAATACCATCCAGGAAAGGCCAATGTGGTAGCCGACGCATTGAGTAGGAAGTCGAGAAAAGTCAAGGCTTCAATGAACGCTATCAATGCGGAATTAACAACAGAGCTTAGGCGTTCAAACGCATCCTTATCGGTGGACGCATTAGGAGGATTGTTTGCGCACTTCCATCTAAGACCTACTTTGACAGAGGAGATTGTTAATAAACAGATGGAAGACTCAATACTTAGAAAAATATTAGAAGAAGTGAAACTTAAGAAAAGAGCGGATTTTGAAATTAGAAATGATGGAACTTTATTGAAACAAGGAAGATTATGCGTTCCTAACGATTTAACATTGAAAAACGTCATTCTAGAGGAAGCTCATAGTTCTGCTTATGCAATGCACCCCGGTAGTACAAAGATGTACAGAACTCTAAGAGGGTATTATTGGTGGCCAGGAATGAAACGAGAAATTGCTGAATGTGTAGCAAGATGCTTGATATGTCAGCAAGTTAAACCAGAAAGACAAAGACCTGGGGACTTTTAA

Protein sequence

MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDYCASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLTNAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRVERPTNVTEVRSFLGLAGYYRRFVEGFSKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGLGCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSLKYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELTTELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIRNDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAECVARCLICQQVKPERQRPGDF

Homology

[Close]

BLAST of Clc02G10670 vs. NCBI nr
Match: KAA0042295.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 704.5 bits (1817), Expect = 6.3e-199
Identity = 354/536 (66.04%), Postives = 407/536 (75.93%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 642  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 701

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KT FRTRYGHYEF VMPFGLT
Sbjct: 702  YPLPRIYDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLT 761

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 762  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLLSAKGVSVDP 821

Query: 181  ---------ERPTNVTEVRSFLGLAGYYRRFVEGFSKIALPLSSLTKKVAKFEWTNECEQ 240
                     ERP + TEVRSFLGLAGYYRRF+E FS++ALPL++LT+K  KFEW+++CEQ
Sbjct: 822  QKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ 881

Query: 241  SFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGLGCVLMQKGKVIAYASRQLKKHECNY 300
            SFQ+LK++LV+ PIL LP    +  +YCDASR GLGCVLMQ G VIAYASRQLK+HECNY
Sbjct: 882  SFQELKKRLVTTPILALPVTGKDCVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNY 941

Query: 301  LTHDLELAEVVLALKIWRHYLYGERCRILSDHKSLKYIFDQKELNLRQRRWMELIKDYDC 360
             THDLELA VVLALKIWRHYL+GE+C I +DHKSLKYIFDQKELNLRQRRW+ELIKDYDC
Sbjct: 942  PTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDC 1001

Query: 361  SIEYHPGKANVVADALSRKSRKVKASMNAINAELTTELRRSNASLSVDALGGLFAHFHLR 420
            +IEYHPGKANVVADALSRKSR  K+++  I   L  ELR S A ++ +  G L A F +R
Sbjct: 1002 TIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVR 1061

Query: 421  PTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIRNDGTLLKQGRLCVPNDLTLKNVILE 480
             +L  EIV +Q EDS L+K  E+ K     +FE+R DG ++KQGRLCVPN   LKN ILE
Sbjct: 1062 SSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGAIVKQGRLCVPNISELKNAILE 1121

Query: 481  EAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAECVARCLICQQVKPERQRPGDF 488
            EAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE V RCLICQQVKP RQRPG F
Sbjct: 1122 EAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGF 1177

[Close]

BLAST of Clc02G10670 vs. NCBI nr
Match: TYK00844.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK00929.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 700.3 bits (1806), Expect = 1.2e-197
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 665  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 725  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 784

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 785  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 844

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 845  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 904

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 905  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 964

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 965  GCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 1024

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 1025 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1084

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1085 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1144

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1145 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1204

[Close]

BLAST of Clc02G10670 vs. NCBI nr
Match: KAA0050527.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 699.9 bits (1805), Expect = 1.5e-197
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1   MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
           MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 326 MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 385

Query: 61  --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                          A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 386 YPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 445

Query: 121 NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
           NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 446 NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 505

Query: 181 ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                             ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 506 KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 565

Query: 241 SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
           S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 566 SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 625

Query: 301 GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
           GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 626 GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 685

Query: 361 KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
           KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 686 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 745

Query: 421 TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
            ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 746 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 805

Query: 481 NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
            DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 806 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 865

[Close]

BLAST of Clc02G10670 vs. NCBI nr
Match: KAA0066849.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 699.9 bits (1805), Expect = 1.5e-197
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 665  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 725  YPLPRIDDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 784

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 785  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 844

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 845  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 904

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 905  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 964

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 965  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 1024

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 1025 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1084

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1085 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1144

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1145 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1204

[Close]

BLAST of Clc02G10670 vs. NCBI nr
Match: KAA0035455.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK01987.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK03719.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK25877.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 699.9 bits (1805), Expect = 1.5e-197
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 665  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 725  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 784

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 785  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 844

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 845  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 904

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 905  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 964

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 965  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 1024

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 1025 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1084

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1085 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1144

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1145 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1204

[Close]

BLAST of Clc02G10670 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.8e-59
Identity = 137/403 (34.00%), Postives = 205/403 (50.87%), Query Frame = 0


Query: 7   KELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGT-----LRLCIDY------------ 66
           +E++ Q+Q+++ +G +R S SP+ + +  V KK         R+ IDY            
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  -------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLTN 126
                          + F+ IDL  G+HQ+++    + KTAF T++GHYE+L MPFGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 APAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHL------------------ 186
           APA F   MN I  P L++  +V++DDI+V+S + ++H + L                  
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 -------------------------RVER------PTNVTEVRSFLGLAGYYRRFVEGFS 246
                                    ++E       PT   E+++FLGL GYYR+F+  F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 KIALPLSSLTKKVAKFEWTN-ECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 306
            IA P++   KK  K + TN E + +F+KLK  +   PIL +P    +F +  DAS   L
Sbjct: 461 DIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVAL 520

Query: 307 GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 330
           G VL Q G  ++Y SR L +HE NY T + EL  +V A K +RHYL G    I SDH+ L
Sbjct: 521 GAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPL 580

[Close]

BLAST of Clc02G10670 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 6.2e-56
Identity = 138/402 (34.33%), Postives = 197/402 (49.00%), Query Frame = 0


Query: 8   ELKVQLQELIYKGYVRPSVSPWGALVLFVKKKD-----GTLRLCIDY------------- 67
           E++ Q+QE++ +G +R S SP+ +    V KK         R+ IDY             
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  ------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLTNA 127
                           F+ IDL  G+HQ+++    I KTAF T+ GHYE+L MPFGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 PAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKH----------------------T 187
           PA F   MN I  P L++  +V++DDI+++S +  +H                       
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EHLRVER---------------------------PTNVTEVRSFLGLAGYYRRFVEGFSK 247
           E L+ E                            PT   E+R+FLGL GYYR+F+  ++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 IALPLSSLTKKVAKFEWTN-ECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGLG 307
           IA P++S  KK  K +    E  ++F+KLK  ++  PIL LP    +F +  DAS   LG
Sbjct: 461 IAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALG 520

Query: 308 CVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSLK 330
            VL Q G  I++ SR L  HE NY   + EL  +V A K +RHYL G +  I SDH+ L+
Sbjct: 521 AVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLR 580

[Close]

BLAST of Clc02G10670 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 219.9 bits (559), Expect = 6.2e-56
Identity = 161/564 (28.55%), Postives = 265/564 (46.99%), Query Frame = 0


Query: 4    KELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY-------------- 63
            K  +E+   +Q+L+   ++ PS SP  + V+ V KKDGT RLC+DY              
Sbjct: 607  KNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPL 666

Query: 64   -----------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLTNAP 123
                        A +F+ +DL  GYHQ+ ++  D  KTAF T  G YE+ VMPFGL NAP
Sbjct: 667  PRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAP 726

Query: 124  AVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLR--VER-------------- 183
            + F   M   F     +F+ V++DDIL++S + E+H +HL   +ER              
Sbjct: 727  STFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCK 786

Query: 184  ---------------------------------PTNVTEVRSFLGLAGYYRRFVEGFSKI 243
                                             P  V + + FLG+  YYRRF+   SKI
Sbjct: 787  FASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKI 846

Query: 244  ALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGLGCV 303
            A P+        K +WT + +++  KLK+ L ++P+L     +  + +  DAS+ G+G V
Sbjct: 847  AQPIQLFI--CDKSQWTEKQDKAIDKLKDALCNSPVLVPFNNKANYRLTTDASKDGIGAV 906

Query: 304  LMQ---KGK---VIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDH 363
            L +   K K   V+ Y S+ L+  + NY   +LEL  ++ AL  +R+ L+G+   + +DH
Sbjct: 907  LEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDH 966

Query: 364  KSLKYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKV-KASMNAIN 423
             SL  + ++ E   R +RW++ +  YD ++EY  G  NVVADA+SR    +   +   I+
Sbjct: 967  ISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPID 1026

Query: 424  AELTTELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKK--R 483
             E      +S+   S   +       H++      +  + M  S  R   ++++L +  R
Sbjct: 1027 TESWKSYYKSDPLCSAVLI-------HMKELTQHNVTPEDM--SAFRSYQKKLELSETFR 1086

[Close]

BLAST of Clc02G10670 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 219.5 bits (558), Expect = 8.1e-56
Identity = 161/564 (28.55%), Postives = 265/564 (46.99%), Query Frame = 0


Query: 4    KELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY-------------- 63
            K  +E+   +Q+L+   ++ PS SP  + V+ V KKDGT RLC+DY              
Sbjct: 633  KNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPL 692

Query: 64   -----------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLTNAP 123
                        A +F+ +DL  GYHQ+ ++  D  KTAF T  G YE+ VMPFGL NAP
Sbjct: 693  PRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAP 752

Query: 124  AVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLR--VER-------------- 183
            + F   M   F     +F+ V++DDIL++S + E+H +HL   +ER              
Sbjct: 753  STFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCK 812

Query: 184  ---------------------------------PTNVTEVRSFLGLAGYYRRFVEGFSKI 243
                                             P  V + + FLG+  YYRRF+   SKI
Sbjct: 813  FASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKI 872

Query: 244  ALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGLGCV 303
            A P+        K +WT + +++ +KLK  L ++P+L     +  + +  DAS+ G+G V
Sbjct: 873  AQPIQLFI--CDKSQWTEKQDKAIEKLKAALCNSPVLVPFNNKANYRLTTDASKDGIGAV 932

Query: 304  LMQ---KGK---VIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDH 363
            L +   K K   V+ Y S+ L+  + NY   +LEL  ++ AL  +R+ L+G+   + +DH
Sbjct: 933  LEEVDNKNKLVGVVGYFSKSLESAQKNYPAGELELLGIIKALHHFRYMLHGKHFTLRTDH 992

Query: 364  KSLKYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKV-KASMNAIN 423
             SL  + ++ E   R +RW++ +  YD ++EY  G  NVVADA+SR    +   +   I+
Sbjct: 993  ISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPID 1052

Query: 424  AELTTELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKK--R 483
             E      +S+   S   +       H++      +  + M  S  R   ++++L +  R
Sbjct: 1053 TESWKSYYKSDPLCSAVLI-------HMKELTQHNVTPEDM--SAFRSYQKKLELSETFR 1112

[Close]

BLAST of Clc02G10670 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.4e-52
Identity = 134/433 (30.95%), Postives = 213/433 (49.19%), Query Frame = 0


Query: 8   ELKVQLQELIYKGYVRPSVSPWGALVLFVKKK-----DGTLRLCIDY------------- 67
           E++ Q+ EL+  G +RPS SP+ + +  V KK     +   R+ +D+             
Sbjct: 138 EVERQIDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYP 197

Query: 68  ------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLTNA 127
                        A  F+ +DL  G+HQ+ +K +DIPKTAF T  G YEFL +PFGL NA
Sbjct: 198 IPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNA 257

Query: 128 PAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLR------------------ 187
           PA+F  +++ I   ++ +   V+IDDI+V+S + + H ++LR                  
Sbjct: 258 PAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKS 317

Query: 188 -------------------------------VERPTNVTEVRSFLGLAGYYRRFVEGFSK 247
                                          +  PT+V E++ FLG+  YYR+F++ ++K
Sbjct: 318 HFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAK 377

Query: 248 IALPLSSLTKKV-AKFEWTNECE----------QSFQKLKEKLVSAPILTLPTPRMEFEV 307
           +A PL++LT+ + A  + +   +          QSF  LK  L S+ IL  P     F +
Sbjct: 378 VAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHL 437

Query: 308 YCDASRQGLGCVLMQ----KGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLY 346
             DAS   +G VL Q    + + IAY SR L K E NY T + E+  ++ +L   R YLY
Sbjct: 438 TTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLY 497

[Close]

BLAST of Clc02G10670 vs. ExPASy TrEMBL
Match: A0A5A7TLH7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold824G00900 PE=4 SV=1)

HSP 1 Score: 704.5 bits (1817), Expect = 3.0e-199
Identity = 354/536 (66.04%), Postives = 407/536 (75.93%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 642  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 701

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KT FRTRYGHYEF VMPFGLT
Sbjct: 702  YPLPRIYDLFDQLRGATLFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFGLT 761

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 762  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLLSAKGVSVDP 821

Query: 181  ---------ERPTNVTEVRSFLGLAGYYRRFVEGFSKIALPLSSLTKKVAKFEWTNECEQ 240
                     ERP + TEVRSFLGLAGYYRRF+E FS++ALPL++LT+K  KFEW+++CEQ
Sbjct: 822  QKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQ 881

Query: 241  SFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGLGCVLMQKGKVIAYASRQLKKHECNY 300
            SFQ+LK++LV+ PIL LP    +  +YCDASR GLGCVLMQ G VIAYASRQLK+HECNY
Sbjct: 882  SFQELKKRLVTTPILALPVTGKDCVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNY 941

Query: 301  LTHDLELAEVVLALKIWRHYLYGERCRILSDHKSLKYIFDQKELNLRQRRWMELIKDYDC 360
             THDLELA VVLALKIWRHYL+GE+C I +DHKSLKYIFDQKELNLRQRRW+ELIKDYDC
Sbjct: 942  PTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSLKYIFDQKELNLRQRRWLELIKDYDC 1001

Query: 361  SIEYHPGKANVVADALSRKSRKVKASMNAINAELTTELRRSNASLSVDALGGLFAHFHLR 420
            +IEYHPGKANVVADALSRKSR  K+++  I   L  ELR S A ++ +  G L A F +R
Sbjct: 1002 TIEYHPGKANVVADALSRKSRLPKSALCGIRVALLNELRGSKAVVTTEDSGSLLAQFQVR 1061

Query: 421  PTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIRNDGTLLKQGRLCVPNDLTLKNVILE 480
             +L  EIV +Q EDS L+K  E+ K     +FE+R DG ++KQGRLCVPN   LKN ILE
Sbjct: 1062 SSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELRTDGAIVKQGRLCVPNISELKNAILE 1121

Query: 481  EAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAECVARCLICQQVKPERQRPGDF 488
            EAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE V RCLICQQVKP RQRPG F
Sbjct: 1122 EAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPGGF 1177

[Close]

BLAST of Clc02G10670 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 700.3 bits (1806), Expect = 5.7e-198
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 665  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 725  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 784

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 785  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 844

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 845  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 904

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 905  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 964

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 965  GCVLMQNGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 1024

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 1025 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1084

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1085 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1144

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1145 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1204

[Close]

BLAST of Clc02G10670 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 7.5e-198
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 627  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 686

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 687  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 746

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 747  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 806

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 807  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 866

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 867  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 926

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 927  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 986

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 987  KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1046

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1047 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1106

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1107 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1166

[Close]

BLAST of Clc02G10670 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 7.5e-198
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 665  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 725  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 784

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 785  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 844

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 845  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 904

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 905  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 964

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 965  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 1024

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 1025 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1084

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1085 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1144

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1145 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1204

[Close]

BLAST of Clc02G10670 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 699.9 bits (1805), Expect = 7.5e-198
Identity = 356/561 (63.46%), Postives = 410/561 (73.08%), Query Frame = 0


Query: 1    MAAKELKELKVQLQELIYKGYVRPSVSPWGALVLFVKKKDGTLRLCIDY----------- 60
            MA  ELKELK+QLQEL+ KGY+RPSVSPWGA VLFVKKKDGTLRLCIDY           
Sbjct: 665  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNK 724

Query: 61   --------------CASVFSKIDLRFGYHQMKIKGTDIPKTAFRTRYGHYEFLVMPFGLT 120
                           A++FSKIDLR GYHQ+K++ +DI KTAFRTRYGHYEF VMPFGLT
Sbjct: 725  YPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTAFRTRYGHYEFRVMPFGLT 784

Query: 121  NAPAVFMDLMNRIFHPYLDQFIVVFIDDILVYSGNKEKHTEHLRV--------------- 180
            NAPAVFMDLMNRIFH YLDQF++VFIDDILVYS ++E H EHLR+               
Sbjct: 785  NAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFS 844

Query: 181  ----------------------------------ERPTNVTEVRSFLGLAGYYRRFVEGF 240
                                              ERP + TEVRSFLGLAGYYRRF+E F
Sbjct: 845  KCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPISATEVRSFLGLAGYYRRFIEDF 904

Query: 241  SKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVSAPILTLPTPRMEFEVYCDASRQGL 300
            S++ALPL++LT+K  KFEW+++CEQSFQ+LK++LV+APIL LP    ++ +YCDASR GL
Sbjct: 905  SRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL 964

Query: 301  GCVLMQKGKVIAYASRQLKKHECNYLTHDLELAEVVLALKIWRHYLYGERCRILSDHKSL 360
            GCVLMQ G VIAYASRQLK+HECNY THDLELA VVLALKIWRHYL+GE+C I +DHKSL
Sbjct: 965  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRHYLFGEKCHIFTDHKSL 1024

Query: 361  KYIFDQKELNLRQRRWMELIKDYDCSIEYHPGKANVVADALSRKSRKVKASMNAINAELT 420
            KYIFDQKELNLRQRRW+ELIKDYDC+IEYHPGKANVVADALSRKSR  K+++  I   L 
Sbjct: 1025 KYIFDQKELNLRQRRWLELIKDYDCTIEYHPGKANVVADALSRKSRLPKSALCGIRVALL 1084

Query: 421  TELRRSNASLSVDALGGLFAHFHLRPTLTEEIVNKQMEDSILRKILEEVKLKKRADFEIR 480
             ELR S A ++ +  G L A F +R +L  EIV +Q EDS L+K  E+ K     +FE+R
Sbjct: 1085 NELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFELR 1144

Query: 481  NDGTLLKQGRLCVPNDLTLKNVILEEAHSSAYAMHPGSTKMYRTLRGYYWWPGMKREIAE 488
             DG ++KQGRLCVPN   LKN ILEEAHSSAYAMHPGSTKMYRTL+  YWW GMK+EIAE
Sbjct: 1145 TDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEIAE 1204

[Close]

BLAST of Clc02G10670 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 9.6e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 143 PTNVTEVRSFLGLAGYYRRFVEGFSKIALPLSSLTKKVAKFEWTNECEQSFQKLKEKLVS 202
           P N TE+R FLGL GYYRRFV+ + KI  PL+ L KK    +WT     +F+ LK  + +
Sbjct: 60  PKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTT 119

Query: 203 APILTLPTPRMEF 216
            P+L LP  ++ F
Sbjct: 120 LPVLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Clc02G10670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042295.1	6.3e-199	66.04	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK00844.1	1.2e-197	63.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK00929.1 D...	[more]
KAA0050527.1	1.5e-197	63.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0066849.1	1.5e-197	63.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0035455.1	1.5e-197	63.46	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >KAA0046782.1...	[more]

BLAST of Clc02G10670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	7.8e-59	34.00	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	6.2e-56	34.33	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q99315	6.2e-56	28.55	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	8.1e-56	28.55	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	2.4e-52	30.95	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Clc02G10670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLH7	3.0e-199	66.04	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5D3BS67	5.7e-198	63.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5A7U2V7	7.5e-198	63.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BHI1	7.5e-198	63.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	7.5e-198	63.46	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]

BLAST of Clc02G10670 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	9.6e-12	45.21	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 137..224 e-value: 2.1E-29 score: 103.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 52..136 e-value: 1.1E-31 score: 111.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 52..139 e-value: 6.9E-14 score: 51.9
None	No IPR available	GENE3D	1.10.340.70		coord: 386..478 e-value: 2.6E-19 score: 71.3
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 64..96 e-value: 1.1E-31 score: 111.7 coord: 1..50 e-value: 2.7E-12 score: 48.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 125..465
None	No IPR available	PANTHER	PTHR24559:SF355	PROTEIN, PUTATIVE-RELATED	coord: 125..465
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 216..330 e-value: 8.27281E-53 score: 172.292
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..139 e-value: 2.43404E-52 score: 173.165
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 185..278 e-value: 2.7E-31 score: 107.5
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 424..479 e-value: 2.2E-18 score: 66.1
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..315

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G10670.1	Clc02G10670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding