Clc02G10530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G10530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotrans_gag domain-containing protein
Location	ClcChr02: 16506638 .. 16506919 (+)
RNA-Seq Expression	Clc02G10530
Synteny	Clc02G10530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCGTGATAATACTAACCTCCTCCCTCTTGATCTCGAGATTGATAGGACTTATAGACGAAATCTAAGGGCTTCACTCAATCAAACTACGGAGATGGCGGAGGAGATACCCAAGGCAATTCGAGACTACTTCCAACCCACGTTACCGGCAAGTCAACCCGGAATAATGAATGTGCCTATCAATGTCAACAATTTTGAGTTGAAACCGGGATTGATCCAAATGGCTAGAGAGCTAGCCTTTAAAGGAAGAACCAATGAAGATCCTCACAAGCACTTATAA

mRNA sequence

ATGCCTCGTGATAATACTAACCTCCTCCCTCTTGATCTCGAGATTGATAGGACTTATAGACGAAATCTAAGGGCTTCACTCAATCAAACTACGGAGATGGCGGAGGAGATACCCAAGGCAATTCGAGACTACTTCCAACCCACGTTACCGGCAAGTCAACCCGGAATAATGAATGTGCCTATCAATGTCAACAATTTTGAGTTGAAACCGGGATTGATCCAAATGGCTAGAGAGCTAGCCTTTAAAGGAAGAACCAATGAAGATCCTCACAAGCACTTATAA

Coding sequence (CDS)

ATGCCTCGTGATAATACTAACCTCCTCCCTCTTGATCTCGAGATTGATAGGACTTATAGACGAAATCTAAGGGCTTCACTCAATCAAACTACGGAGATGGCGGAGGAGATACCCAAGGCAATTCGAGACTACTTCCAACCCACGTTACCGGCAAGTCAACCCGGAATAATGAATGTGCCTATCAATGTCAACAATTTTGAGTTGAAACCGGGATTGATCCAAATGGCTAGAGAGCTAGCCTTTAAAGGAAGAACCAATGAAGATCCTCACAAGCACTTATAA

Protein sequence

MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKGRTNEDPHKHL

Homology

[Close]

BLAST of Clc02G10530 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0


Query: 1   MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVP 60
           MPRDNTNLLPLD EIDRTYRRNLRA LNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVP
Sbjct: 17  MPRDNTNLLPLDPEIDRTYRRNLRALLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVP 76

Query: 61  INVNNFELKPGLIQMARELAFKGRTNEDPHKHL 94
           INVNNFELKPGLIQMARELAF+GRTNEDPHKHL
Sbjct: 77  INVNNFELKPGLIQMARELAFRGRTNEDPHKHL 109

[Close]

BLAST of Clc02G10530 vs. NCBI nr
Match: XP_042465896.1 (uncharacterized protein LOC122048392 [Zingiber officinale])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 37/88 (42.05%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 8  LLPLDLEIDRTY--RRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNN 67
          LLP DLEIDRT+  +RNL+ +     E +E   K ++DY  P     +  I   PI  NN
Sbjct: 10 LLPFDLEIDRTFLRKRNLQKAFQAAQESSEMADKLLKDYAAPYALGVRSSITRPPIEANN 69

Query: 68 FELKPGLIQMARELAFKGRTNEDPHKHL 94
          FE+KP +I M ++  F G  +EDP+ HL
Sbjct: 70 FEIKPAVIHMVQQNQFGGGPHEDPNHHL 97

[Close]

BLAST of Clc02G10530 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.8e-09
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 0


Query: 7  NLLPLDLEIDRTYRRNLRASLNQTTEMAEE----IPKAIRDYFQPTLPASQPGIMNVPIN 66
          +++P+D EI+RT R   R   N+   MAEE    +P+ ++DY +P +  +   IM  PIN
Sbjct: 8  DIIPVDPEIERTLRSLRR---NKILAMAEEDREVLPRTLKDYVRPVVNGNYSSIMRQPIN 67

Query: 67 VNNFELKPGLIQMARELAFKGRTNEDPHKHL 94
           NNFELKP LI M ++  F G   +DP+ HL
Sbjct: 68 ANNFELKPALISMVQQAQFSGSPLDDPNIHL 95

[Close]

BLAST of Clc02G10530 vs. NCBI nr
Match: XP_022157708.1 (uncharacterized protein LOC111024361 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-09
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 24 RASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKG 83
          R  L Q  +M       IRDY QP  P +  GI+N+PIN NN ELKPGLIQM RE  F+G
Sbjct: 16 RPQLEQNNQM------TIRDYCQPNFP-NHVGIINLPINANNSELKPGLIQMVRENTFRG 75

Query: 84 RTNEDPHKHL 94
             EDP+ HL
Sbjct: 76 NATEDPNNHL 78

[Close]

BLAST of Clc02G10530 vs. NCBI nr
Match: PNX93836.1 (hypothetical protein L195_g016998, partial [Trifolium pratense])

HSP 1 Score: 72.0 bits (175), Expect = 3.0e-09
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVP 60
          + R    +L  D EI+RT RRN RA   ++  MAE   + +RDYF P+   +   I+N P
Sbjct: 2  LTRSKEPVLLFDSEIERTARRN-RA---KSRAMAEIPRRTLRDYFTPSTNIT-TSIVNPP 61

Query: 61 INVNNFELKPGLIQMARELAFKGRTNEDPHKHL 94
          +  NNFELKPGLIQM +   F+G   EDP+ HL
Sbjct: 62 VQANNFELKPGLIQMIQNSTFRGSPTEDPNAHL 89

[Close]

BLAST of Clc02G10530 vs. ExPASy TrEMBL
Match: A0A2K3MSV7 (Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g016998 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 42/93 (45.16%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 1  MPRDNTNLLPLDLEIDRTYRRNLRASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVP 60
          + R    +L  D EI+RT RRN RA   ++  MAE   + +RDYF P+   +   I+N P
Sbjct: 2  LTRSKEPVLLFDSEIERTARRN-RA---KSRAMAEIPRRTLRDYFTPSTNIT-TSIVNPP 61

Query: 61 INVNNFELKPGLIQMARELAFKGRTNEDPHKHL 94
          +  NNFELKPGLIQM +   F+G   EDP+ HL
Sbjct: 62 VQANNFELKPGLIQMIQNSTFRGSPTEDPNAHL 89

[Close]

BLAST of Clc02G10530 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.5e-09
Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 0


Query: 24 RASLNQTTEMAEEIPKAIRDYFQPTLPASQPGIMNVPINVNNFELKPGLIQMARELAFKG 83
          R  L Q  +M       IRDY QP  P +  GI+N+PIN NN ELKPGLIQM RE  F+G
Sbjct: 16 RPQLEQNNQM------TIRDYCQPNFP-NHVGIINLPINANNSELKPGLIQMVRENTFRG 75

Query: 84 RTNEDPHKHL 94
             EDP+ HL
Sbjct: 76 NATEDPNNHL 78

[Close]

BLAST of Clc02G10530 vs. ExPASy TrEMBL
Match: A0A6J0ZX64 (LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica OX=108875 GN=LOC110412945 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 9.5e-09
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 3   RDNTNLLPLDLEIDRTYRRNLR-----ASLNQT------------TEMAEEIPKAIRDYF 62
           R+N NL+P D +I+RT+RR+ R     A+LNQT              +  E  +A+RDY 
Sbjct: 4   RNNLNLVPFDPDIERTFRRHRRENLQVATLNQTMAEDNNNNGNNAINLVPEANRALRDYV 63

Query: 63  QPTLPASQPGIMNVPINVNNFELKPGLIQMAR-ELAFKGRTNEDPHKHL 94
            P +      I    IN NNFE+KP  IQM +  + F G  ++DP+ HL
Sbjct: 64  VPLVQGLHQSIRRPSINANNFEIKPAYIQMIQSSVQFSGLPSDDPNSHL 112

[Close]

BLAST of Clc02G10530 vs. ExPASy TrEMBL
Match: A0A6J0ZYV0 (uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC110413413 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = 0


Query: 3   RDNTNLLPLDLEIDRTYRRNLR-----ASLNQT------------TEMAEEIPKAIRDYF 62
           R+N NL+P D +I+RT+RR+ R     A+LNQT              +  E  +A+RDY 
Sbjct: 4   RNNLNLVPFDPDIERTFRRHRRENLQVATLNQTMAEDNNNNGNNAINLVPEANRALRDYA 63

Query: 63  QPTLPASQPGIMNVPINVNNFELKPGLIQMAR-ELAFKGRTNEDPHKHL 94
            P +      I    IN NNFE+KP  IQM +  + F G  ++DP+ HL
Sbjct: 64  VPLVQGLHQSIRRPSINANNFEIKPAYIQMIQSSVQFSGLPSDDPNSHL 112

[Close]

BLAST of Clc02G10530 vs. ExPASy TrEMBL
Match: A0A3S3N117 (Retrotrans_gag domain-containing protein OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_01212200 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 37/94 (39.36%), Postives = 54/94 (57.45%), Query Frame = 0


Query: 5  NTNLLPLDLEIDRTYRRNLRASLNQT----TEMAEEIPKAIRDYFQPTLPASQPGIMNVP 64
          N NL+PLD EI+RT RR  +    Q+    TEM E+  +++ DY  P +  +   I    
Sbjct: 6  NLNLVPLDPEIERTLRRLKKEKKQQSEFEITEMKEQANRSLGDYAVPLVTGATSSIRRPV 65

Query: 65 INVNNFELKPGLIQM-ARELAFKGRTNEDPHKHL 94
          I  NNFE+KP +IQM A  + F G  ++DP+ H+
Sbjct: 66 IQANNFEIKPAIIQMVASTVQFSGLPDDDPNAHI 99

The following BLAST results are available for this feature:

BLAST of Clc02G10530 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833153.1	1.1e-43	96.77	retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70...	[more]
XP_042465896.1	1.8e-09	42.05	uncharacterized protein LOC122048392 [Zingiber officinale]	[more]
KAG7990634.1	1.8e-09	41.76	hypothetical protein I3843_02G035100 [Carya illinoinensis]	[more]
XP_022157708.1	3.0e-09	52.86	uncharacterized protein LOC111024361 [Momordica charantia]	[more]
PNX93836.1	3.0e-09	45.16	hypothetical protein L195_g016998, partial [Trifolium pratense]	[more]

BLAST of Clc02G10530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G10530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K3MSV7	1.5e-09	45.16	Uncharacterized protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g01699...	[more]
A0A6J1DU19	1.5e-09	52.86	uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J0ZX64	9.5e-09	37.61	LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 OS=Herrania umbratica ...	[more]
A0A6J0ZYV0	1.2e-08	37.61	uncharacterized protein LOC110413413 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A3S3N117	3.6e-08	39.36	Retrotrans_gag domain-containing protein OS=Cinnamomum micranthum f. kanehirae O...	[more]

BLAST of Clc02G10530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G10530.1	Clc02G10530.1	mRNA