Clc02G10265 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G10265
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase subunit beta
Location	ClcChr02: 16239867 .. 16244176 (-)
RNA-Seq Expression	Clc02G10265
Synteny	Clc02G10265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGAAGAGGTCGAGGTGGAATCCAGGGCTTACCTATGGAAAATCGAGCCTGTGAAGGTTCAAGAAGAGGCCAAATTAGAACTGAAGAGATTTGTGCCCTCCTTGGCCTTGGTGGCCGAGGATGAGATCAAAGTGGAATCGAAGAAATTTGTGTCCTTCTTGGCCTTGGTGGCTAGGAAGATGCCAAGTTAAAATTGAAGATATTTGTGCTCTCCTTGGCCTTGGTGGCCGAGGATGAGGTCTAATTGGAATTGAAGAAATTTGTGTGCCCTCCCTAGCTTTGGCGGCTGAGAGAACAAATTGAAACTAAATATATTTGTGCCCTCCTTGGCCCCGAAGAGGTCAAATTAGAGCCAAAGAAATTTGTGCCCTCCCTGGCCTTGGCGCCCAAGAGGGCAAATTGAAACTGAAGAGATTTGAGCCTTCCTTGACCTTGGTGGCCAAATTGGAACTTAATTGTTCCTTTTGCGAAACTTACTTTTTGGATAAATCCATAATCATTCAGAGGTATGCTCAACGAACCTTGGTTCGTTGTTTCCAAGAATAAAAAAGTTCGTACAATAAGTTATTCCTATTTTAGAAGTAGAAGTAAAAACTTCAATGAAAAATGAGCGTGAGACTTATGACTTACTTGACATGATATAATGAAAGGATAAACTTAGAAGCACAAAAGAATAAACCCTTCCTCCTTCATCTCCTTGTCACTATTACTATCATTAGCCCTTTCACCCCTTTCAGAATCATCAGATGAAGGAGGAAGATCATGTTCTCTCGACGCCGGATGTAGGCATCATGAAGAAAGGTGTAGCTTTGACCGAGATATTGACGGGAAGATTTCTTGCACCACCAAGTAAGTCCTTGTTCCATAACATTATTCTGCATTTTAGTATATCTCTCTACTTTCTCGAATGCATTAGCTAGATAGTCAGTAGAGTCGAGAAGTTCTTTAGTTTCACTTAGTTGAGCTTTGAGCTGGCTAATCTCCCTCTGAGAGTTAACTTTGTTAGCATGCAGTTCATCTCTCACCTCCTCGAGAATTTGCTAAGTTTGAGCTAGATTAGCTCGAGCTTGGATTAGCTCCATACAATCTTGTTACAAAGAGTTGATGTGATCAATCAAGCTTAGGCTCGAAATATAAATCTTAATAAAAAGCTGTAAAAGATACATTAAGATTTAGAAAAAGAGAAAACAAAACAAATAAACAAAACATGAAAAAAAAAAAAAGAAATAGAGCAGTAGACCTAATACTAGAAACTAGAGTCGACCCGATCCGAGGTTGACCTGATGCAAGACAACCCGAGAGCATAAGAAAATAATAATAATAGACAAAGCAATATAAAATATATAACAAACAAAAATATTCAAATCACCTCCTGAAGACTATAAAACAACCAAGGAAAGAGCCTCGAGGGGTCAGCAGCACCGTCCTTCTCTTTTTTTTTCACCTACTCATACTCTAAAAAAAGGAAGCTTTTCGAGTACTCATCTTTGTAAGAAAAAGATAATAATAATAAAATAATTAGGAAGAGTGAGACAAAATCCGAATCGGCCTCCTTCGAGGCTGACTTGAGGCCAAAAGGTAGTTTCTTCCAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAGAAAAAAAAGAGAGAGGAAAAGAAGAAGGGGAAGTAATAGGAACCTATTGAAGAGTTTGGAGAAACAAGGTCAACCAAAATTTAGTTTTCTTGAGTGATGAAATTAGAGTCATGTTTCATGTCAACGTCCAAACTTTGAATGACCCAAGCAAAATTTCTTGCAATAGAAGAATAGGTAAACTCTCGAGGCACTGAAAAGGGGTGGAACCAAAAAGAAAAAAAAAAAGTTAGATAACAAAGGAAAGAGGAGGTTTCAGGCAAGAGGAAAGGGAAAAGGCTCTTACCGTAATCCTTAAACCTTGTTGGAACAACTCATACTTGCCTCATCAGTAGATAGCCAGTCACCGCTAGCAAAAAACCAACATTCTTTCTTGTGTTGACATAGGAGCTCCAATTTCGAGATTAATTTGATACGAAGATAGAAAAGTAGGAATTGACATAGGAGCTCCATCACCGTAAACTTGCCAAAGAGAGTAAGTACTTATAAGATGGCTCCAACCATTTGACAAAATTTGCATAGGAGCAAGTTGTATTAAAGCTAAAAAAAATTTGAAGAAATAACGGTAAAGGAAGTCAAACCCCAAAATGGAACATAACCAGATAAAGAGCTACCTCACCATTAGGAGGGTTATCGATAGTTTCGTTAACATGAGAAACCCTCAAACGAACTGTAAAAGGAATGTAATAATCAAGGTGTAAGACCTCAAGTTGAACGCAAGTCATAGAGGATGGTAAATCCCCCACGAGCATAGAAGGTTCTCAACCAAGTAATCAGGGAAGTGATAGAAGATTACTCAACCAAGTACTCATGGGAGTCTGGGGACTCATAATAAGAAGAAGAAGAGTCGTTCTCGTCATAAACATTTTCATTGTCTTCACTATCTCTAAAAGACATAGTCTTAAGAAAAACAAGAGAAGAAAAAAAAAAAACTAACTAAAACCTACCTTGGGATAAGTTGGAAGTGTTGGGACTAGTGTGTCCTAAATCTCTTGGGTCTTGTAGTTTTGTAAATTGTATATACATTTTATTTATTAAATAAAATAAGAAGTTATTTTATCTATCTTATGCATTAACTCAATCCAATAAACTAATATTCCATGGTTGTTTTATGTAAACTTAAACATGTGTGTGATTGACATACAAGGTTGGATCATGTTAAGTAATAACTAAAAGGTTTGTAGTATAGTAATAACTGATCTTACTCTTTTGTAATATCAACTATCCCTTTCTAGTTCTCTTAACATGCTCAAGCATACATAAACATAAAGAATACTTTTATTTAATGCAACAACTTCGGGTTTGTATACAGTATAAAATGTTTTACAACTTAATATCCAACCTTAAACTCAATATACTATGCTATGGAATGGTAGACCTCAACTTCGTACAACAACCATAACTCTTTTGCTACCTACAAAGAAAACATAAAAAGAAAGGACGAACTTATAAAGCCCAGTGAATGGTCAATAAACAACTAGGGTACACACGACCCTTTCAATAATAAAGAAGAAATTATAACAATATATTTAAACATAACCGAGGCTATTCAATCAAACCTCAACACGAAGCTTATCCTAGTACCATACTTTACCCTGCTGACTCTCTCTGGCTTAGCAACTGAACCCATTCCCTATGTGCACATAGCTTTATCTCTGAGGGATTAGAAGCTAGACTCACCGGTCCTCTGACCATTCCACAAGAGATACCTCCCATAGAATCAGGAACTAGGTTTCTGGCAACCCCCTGACCATCCCGTGAGGTTTTAACCCTGACACAGGATCAGAAACTAGATCCTCAAATCCTCTGAACATCCTGTGCTGCCTTAGCTTCTTATTAAGCATTCACAAACACATATGCATTGCAAATATATCTTTAAGTTATAAGGAAATCATAATATTACTAAAGAAACAAACTAGTAACCATTTACAGTTTGACGGAGTTCTAGTTTTTCAAAGTTTCCTTCCTCTACTCTAGACTCACTCATCTCTAAAGTCCAACTTGGTTCCAACCTCCTGGTTTCCTACTAGGCTTTTGGAACTAAGAAAACAATAATTAACATCCATTTGAAGCCTCCGAAAACTCACAAAAATGCCCGGAATACCTCCTTGGACACAAATGACACTTTCTTGGATGTAGGACAACACCTCAAATAACCAAACTGCATTTTTTGGACGTAACCCTGCACAGTTGGACGCGAGGCAACATAACAATATTCCTTTAGAAACCCCCCAAAAAAATACCCAACCCGAATCAACATATTTTTTTGTTTTACGCCCCATAATTCTTCCTTAGCCAAGCTCGGGTAAAATAGCAGAGCAAGTAAAAGTATTAGTAGCTACCTCTCATTTTTTTTTTTAGGATTCTTCCTATTCGTAGGTCATTGATAACATGCAGGAAGGGCTCATGCAGCTGGCTATAGCTGAACACGAGGGAAAGATCATTTATACCAACACTGACAAGATCATTTTTTCGGGCAATGGGTATACTCGAAGAATTCCATTAATTATTTATCAATGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAAGGTAAATGCATTAAAATGGGAAATTTTTTTAAATTCATTTTCCAAAAAACTTCAATTGATACAAGTAAGAAATATGCCAATTCAGCAGCCTTTTGCTCAATTTCTCGTGGGGTTAGATTATGA

mRNA sequence

ATGAGGGAAGAGGTCGAGGTGGAATCCAGGGCTTACCTATGGAAAATCGAGCCTGTGAAGGTTCAAGAAGAGGCCAAATTAGAACTGAAGAGATTTGTGCCCTCCTTGGCCTTGGTGGCCGAGGATGAGATCAAAGTGGAATCGAAGAAATTTGTGTCCTTCTTGGCCTTGAATCATCAGATGAAGGAGGAAGATCATGTTCTCTCGACGCCGGATGTAGGCATCATGAAGAAAGGTGTAGCTTTGACCGAGATATTGACGGGAAGATTTCTTGCACCACCAATCATAGAGGATGGTAAATCCCCCACGAGCATAGAAGGTTCTCAACCAAGTAATCAGGGAAGTGATAGAAGATTACTCAACCAAGAAGGGCTCATGCAGCTGGCTATAGCTGAACACGAGGGAAAGATCATTTATACCAACACTGACAAGATCATTTTTTCGGGCAATGGGTATACTCGAAGAATTCCATTAATTATTTATCAATGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAAGGTAAATGCATTAAAATGGGAAATTTTTTTAAATTCATTTTCCAAAAAACTTCAATTGATACAAGTAAGAAATATGCCAATTCAGCAGCCTTTTGCTCAATTTCTCGTGGGGTTAGATTATGA

Coding sequence (CDS)

ATGAGGGAAGAGGTCGAGGTGGAATCCAGGGCTTACCTATGGAAAATCGAGCCTGTGAAGGTTCAAGAAGAGGCCAAATTAGAACTGAAGAGATTTGTGCCCTCCTTGGCCTTGGTGGCCGAGGATGAGATCAAAGTGGAATCGAAGAAATTTGTGTCCTTCTTGGCCTTGAATCATCAGATGAAGGAGGAAGATCATGTTCTCTCGACGCCGGATGTAGGCATCATGAAGAAAGGTGTAGCTTTGACCGAGATATTGACGGGAAGATTTCTTGCACCACCAATCATAGAGGATGGTAAATCCCCCACGAGCATAGAAGGTTCTCAACCAAGTAATCAGGGAAGTGATAGAAGATTACTCAACCAAGAAGGGCTCATGCAGCTGGCTATAGCTGAACACGAGGGAAAGATCATTTATACCAACACTGACAAGATCATTTTTTCGGGCAATGGGTATACTCGAAGAATTCCATTAATTATTTATCAATGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCACCAAGGTAAATGCATTAAAATGGGAAATTTTTTTAAATTCATTTTCCAAAAAACTTCAATTGATACAAGTAAGAAATATGCCAATTCAGCAGCCTTTTGCTCAATTTCTCGTGGGGTTAGATTATGA

Protein sequence

MREEVEVESRAYLWKIEPVKVQEEAKLELKRFVPSLALVAEDEIKVESKKFVSFLALNHQMKEEDHVLSTPDVGIMKKGVALTEILTGRFLAPPIIEDGKSPTSIEGSQPSNQGSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNFFKFIFQKTSIDTSKKYANSAAFCSISRGVRL

Homology

[Close]

BLAST of Clc02G10265 vs. NCBI nr
Match: YP_009236272.1 (RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polymerase beta subunit [Gynostemma longipes] >AMF83983.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ANI25177.1 RNA polymerase beta subunit [Gynostemma pentaphyllum] >ATG86892.1 RNA polymerase beta subunit [Gynostemma longipes])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. NCBI nr
Match: ART64964.1 (RNA polymerase beta subunit [Gynostemma pentaphyllum])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. NCBI nr
Match: YP_009468853.1 (RNA polymerase beta subunit [Gynostemma compressum] >AVA29809.1 RNA polymerase beta subunit [Gynostemma compressum])

HSP 1 Score: 112.8 bits (281), Expect = 3.6e-21
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL++YQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHRGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. NCBI nr
Match: AHM89856.1 (RNA polymerase beta subunit [Lagenaria siceraria])

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPLI+YQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLIMYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. NCBI nr
Match: AHM88854.1 (RNA polymerase beta subunit, partial [Lagenaria siceraria])

HSP 1 Score: 112.5 bits (280), Expect = 4.7e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPLI+YQ SNKNTCMQQK
Sbjct: 554 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLIMYQRSNKNTCMQQK 613

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 614 SQVHQGKCIKKG 623

[Close]

BLAST of Clc02G10265 vs. ExPASy Swiss-Prot
Match: Q4VZP1 (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 8.1e-24
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL++YQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. ExPASy Swiss-Prot
Match: Q68S14 (DNA-directed RNA polymerase subunit beta OS=Panax ginseng OX=4054 GN=rpoB PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.0e-19
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 128 LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMG 186
           LAIAEHEGKIIYT+TDKI+ SGNG T  IPL+IYQ SNKNTCM QK QV +GKCIK G
Sbjct: 579 LAIAEHEGKIIYTDTDKILLSGNGNTLSIPLVIYQRSNKNTCMHQKPQVQRGKCIKKG 636

[Close]

BLAST of Clc02G10265 vs. ExPASy Swiss-Prot
Match: Q1KXX2 (DNA-directed RNA polymerase subunit beta OS=Helianthus annuus OX=4232 GN=rpoB PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-19
Identity = 44/63 (69.84%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 128 LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNF 187
           LAIAEHEGKI YT+TDKI+ SGNG T RIPL++YQ SNKNTCM QK QV +GKCIK G  
Sbjct: 570 LAIAEHEGKIFYTDTDKILLSGNGDTLRIPLVMYQRSNKNTCMHQKPQVRRGKCIKKGQI 629

Query: 188 FKF 191
             +
Sbjct: 630 LAY 632

[Close]

BLAST of Clc02G10265 vs. ExPASy Swiss-Prot
Match: Q56P13 (DNA-directed RNA polymerase subunit beta OS=Lactuca sativa OX=4236 GN=rpoB PE=3 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-19
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 128 LAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQKSQVHQGKCIKMGNF 187
           LAIAEHEG+IIYT+TDKI+ SGNG T RIPL++YQ SNKNTCM QK QV +GKCIK G  
Sbjct: 570 LAIAEHEGEIIYTDTDKILLSGNGDTLRIPLVMYQRSNKNTCMHQKPQVQRGKCIKKGQI 629

Query: 188 FKF 191
             +
Sbjct: 630 LAY 632

[Close]

BLAST of Clc02G10265 vs. ExPASy Swiss-Prot
Match: Q14FG5 (DNA-directed RNA polymerase subunit beta OS=Populus alba OX=43335 GN=rpoB PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.8e-19
Identity = 47/72 (65.28%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEHEGKIIYT+ DKII SGNGYT  IPL++YQ SNKNTCM QK
Sbjct: 566 GLERQVALDSGVP--AIAEHEGKIIYTDIDKIILSGNGYTVSIPLVMYQRSNKNTCMHQK 625

Query: 174 SQVHQGKCIKMG 186
           +QV +GKCIK G
Sbjct: 626 TQVQRGKCIKRG 635

[Close]

BLAST of Clc02G10265 vs. ExPASy TrEMBL
Match: A0A109WXU0 (DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN=rpoB PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. ExPASy TrEMBL
Match: A0A286QM55 (DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN=rpoB PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. ExPASy TrEMBL
Match: A0A291IB39 (DNA-directed RNA polymerase subunit beta OS=Gynostemma longipes OX=555431 GN=rpoB PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL+IYQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVIYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. ExPASy TrEMBL
Match: A0A2L0WR02 (DNA-directed RNA polymerase subunit beta OS=Gynostemma compressum OX=1348125 GN=rpoB PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.8e-21
Identity = 54/72 (75.00%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPL++YQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHRGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. ExPASy TrEMBL
Match: X2F5U4 (DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 55/72 (76.39%), Postives = 61/72 (84.72%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEH GKIIYT+TDKIIFSGNGYTRRIPLI+YQ SNKNTCMQQK
Sbjct: 566 GLERQVARDSGV--AAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLIMYQRSNKNTCMQQK 625

Query: 174 SQVHQGKCIKMG 186
           SQVHQGKCIK G
Sbjct: 626 SQVHQGKCIKKG 635

[Close]

BLAST of Clc02G10265 vs. TAIR 10
Match: ATCG00190.1 (RNA polymerase subunit beta )

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 46/72 (63.89%), Postives = 56/72 (77.78%), Query Frame = 0


Query: 114 GSDRRLLNQEGLMQLAIAEHEGKIIYTNTDKIIFSGNGYTRRIPLIIYQCSNKNTCMQQK 173
           G +R++    G+   AIAEHEGKI+YT+T+KI+FSGNG T  IPLI+YQ SNKNTCM QK
Sbjct: 568 GLERQVALDSGVP--AIAEHEGKILYTDTEKIVFSGNGDTLSIPLIMYQRSNKNTCMHQK 627

Query: 174 SQVHQGKCIKMG 186
            QV +GKCIK G
Sbjct: 628 PQVRRGKCIKKG 637

The following BLAST results are available for this feature:

BLAST of Clc02G10265 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009236272.1	2.8e-21	76.39	RNA polymerase beta subunit [Gynostemma pentaphyllum] >YP_009440149.1 RNA polyme...	[more]
ART64964.1	2.8e-21	76.39	RNA polymerase beta subunit [Gynostemma pentaphyllum]	[more]
YP_009468853.1	3.6e-21	75.00	RNA polymerase beta subunit [Gynostemma compressum] >AVA29809.1 RNA polymerase b...	[more]
AHM89856.1	4.7e-21	76.39	RNA polymerase beta subunit [Lagenaria siceraria]	[more]
AHM88854.1	4.7e-21	76.39	RNA polymerase beta subunit, partial [Lagenaria siceraria]	[more]

BLAST of Clc02G10265 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP1	8.1e-24	75.00	DNA-directed RNA polymerase subunit beta OS=Cucumis sativus OX=3659 GN=rpoB PE=3...	[more]
Q68S14	6.0e-19	77.59	DNA-directed RNA polymerase subunit beta OS=Panax ginseng OX=4054 GN=rpoB PE=3 S...	[more]
Q1KXX2	7.8e-19	69.84	DNA-directed RNA polymerase subunit beta OS=Helianthus annuus OX=4232 GN=rpoB PE...	[more]
Q56P13	7.8e-19	69.84	DNA-directed RNA polymerase subunit beta OS=Lactuca sativa OX=4236 GN=rpoB PE=3 ...	[more]
Q14FG5	7.8e-19	65.28	DNA-directed RNA polymerase subunit beta OS=Populus alba OX=43335 GN=rpoB PE=3 S...	[more]

BLAST of Clc02G10265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A109WXU0	1.3e-21	76.39	DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN...	[more]
A0A286QM55	1.3e-21	76.39	DNA-directed RNA polymerase subunit beta OS=Gynostemma pentaphyllum OX=182084 GN...	[more]
A0A291IB39	1.3e-21	76.39	DNA-directed RNA polymerase subunit beta OS=Gynostemma longipes OX=555431 GN=rpo...	[more]
A0A2L0WR02	1.8e-21	75.00	DNA-directed RNA polymerase subunit beta OS=Gynostemma compressum OX=1348125 GN=...	[more]
X2F5U4	2.3e-21	76.39	DNA-directed RNA polymerase subunit beta OS=Lagenaria siceraria OX=3668 GN=rpoB ...	[more]

BLAST of Clc02G10265 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00190.1	2.1e-19	63.89	RNA polymerase subunit beta	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.100		coord: 128..188 e-value: 7.8E-9 score: 37.3
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 126..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G10265.1	Clc02G10265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding