Clc02G09860 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G09860
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionU11/U12 small nuclear ribonucleoprotein 65 kDa protein
LocationClcChr02: 14780950 .. 14787966 (-)
RNA-Seq ExpressionClc02G09860
SyntenyClc02G09860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCATTGCAGAAGTTGTGTCCTTTGCTACAACAGTAGGCAGAAGCGCTGGCCGGGTAGGAAGAATAATTGGGAAAAGGCTTCATCACAACCTAGGAAAATTGCAAAAGACCCTACCAAGAATGCGATTCAAGTCAGCTCTGCATAGGGCAAAGAGACAACAACAAATAAATCTGAAGCAGACTAGAAAGGGAGTAACAATACTTCTTTTAAAAATAACCCTTATAATCAGCCTAACCTTAGGAAATGTTTTAGGTGTGGCAAAATCAGGCATCTTTCCAACGTTGCCCTCAAAGAAAAAAATCTTAGAATTCAAAAAGGCAAGAAGACCAAGAAGAAATCAATCTTGATGAGCAAAAGTGAAGATGTTGCTTATGCAGAGCCCGATAATGGTGATGCACTGTCTTGTGTCATCCAAAAAATTCTTTTAGCACCAACTACGGTGACAATGCCCCAGCGGCATGAGCTATTTCGAACAAGGTTTACGATAAAAGGAAAGATTTGCAACATTATCATGGATAGTGGAAGCAATGAGAATATGGTTTCGAAGAAGCTTGTTTAAGCTCTTAAACTAAAGACTGATGGTCATCCTAGCCCTTAGAAGGTGGGCTGGATAAAAAAAGAGGGGCAGAAGTCTTAGTAAATGAAACATGTATGGCCCCTCTGTCAATAGGCAATCACTACAAGGCATATATAAGTCCATGTGAGAACCATACACTGAAATATGGAACCAGTCCTGGCCAATTGCTAAAACTATGCATCAGGCTTTTTGTTAGATCAATATGTTGAGATGTAAATTTGAAGATTTCGAGAATGTGCAACTAATTATAAGTTGAATTCCACCTCATTGTAACCCTAGGATAGGCCTATATATCTGGTCTTTTGATGCATGGAAAAACATTACTTTCACATTCTTCTAATGCTTTTCTTTGCCAACTCTTAAAATTTTAAAATTTTAAAATTTTCTATGGTGCTTATCTTTTCCAATGAGAGGTTTAGTTTTAACTAGGTGGTTTTTATTTTGTAGGATCATTATTTGAAGGTATTGATGAAGCCAAGTCCGCTCTAACTGTGAAGCTAATGCAGGTTAGGTATTGTTGTCAGATGTGTAGTTTGACAATAAGTTTTTGAATAATCGAGAATTATGTAATTTCTTCTCTGATTACTTGAAGAGCATTACAGAAACATCTGCAAAGTTGCCTCATTGTCTGAACTGGGAAGCTAATAATATGTATAATATGCTTTATTATTAGGCATCAGCTTTTACAAAGATAAGGCAAGCATAAATAAGGGAAGTCTTAGACAAAGCCTATTATGGAAAGATACGGCTGAAGATTGCCTAGGTTGATTCTCCACACTCGAGAAATGCTATACATCTGTGATTGAAAAAAATTAAAAAAAGATGATGTTTAGTAAAATTATCCAACTCTTCTATACCATTAAATCTCACTTTGGTCATTATTTTTGAAGTGTGAGATGTACTAACGTACAATGACTTATATAGAAAGTAGTAAAATACACTTTCTTAGATTTTTTAATACTATAAAGCATGGAACGGTAAAAATACTCCCAAGGATTGGATTGCTTTCATTTTCTTTGTTTAATTTAGTTTGTATCCTTCAGTTGAACTTTCATTTTCAGTTTCTGCATTATTGTATTTTAAGCATTAGACTCTTTTCATTATATCAATCAAGGGTCTCGTTTCCTTTTCAAAGGAAAAAAGGAAAAAAAGAACTCCAAAGATTTGAAGTCAAACGTATTAGTCTTGGACTCTTGCTGACCAGGCTCAGGGACATTTCCCTAGAAGTTTGAGGAAGGGAGAAATTGTCCTGTTAGCATGATAGTGTTGCAAAGATCAGAGTGTAATGTATGACCCTTTATCAAAAGAACAAAACCTGTATCAAAATTTTTCTCCGAAAAAGGAAAAAAAAGAAGAAAGAATAAAAAAGGTATCTGAATGATGCAATGCAAGTTACAAACCATGGGAAAAAAATCAAATTAAATATGACCTAGGTTATCATTAGTTCAAAGAATACAACCTTGTGTAATATGATCTCTTATCAATGTGTGTTAGAAAGTTTCTTGAAGAAAGAGCAGAAAATAGTGATTGCTCATCTGAGTGTATAAAATTATGACCTGAGTTTCAAAATTTTTCTTATTCTGAATTTCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTAACATTTCCATCGGTTGAGCTTGCACAACATGCTTTGGTATGTATTTGATTATTTGGATCCATGTATTTTCTTGATCACTATTCACTTGACATATTGATCATGAGTGCTCGTGGTTGTCTAGGAACAACCAGAATTCCCCTCCACTTTGTGGAATTATGGAGTAATTGTTCTTTTAGATGTTTGAGTTGTTGCAATATAAATGAAAGTTAGAGGAGATTTTGTTTAACTTAAGTTCTATGCAGCTGGCTCATAATTGGTACATTACTATGAAGTACAAACACTTCATTGTAAGGTGGTATCAGTGTGAGACACAAGTTTGTCCAGACACGCAGGGGACACATGTCTGAAATGCAAATTTACATGTCACTTTTTTTAATTTTTAAATTCAGACATGTTGAGACACAGTAAGGATACTTCTTGGAAATGACTGAAAAAAAGTTAAAGAAACAATTGTTTAAAGTATGGGCCTAAATTTAAAGGCCAATAACTTTCTTTTTAAACTTATAAAAAATTAAAAAAAAAACAAAAAAAAACCTAAACAGTAAAAACGAAATAAACATTAACTTTTCAACTCTCCTCCTACCCTTATCGTGCAATTCATGGAAACGTACAGGCACAATAGTTTTCTTAGTTTTCCTTCACACTAGAGCAGAAGATGTTGTCGACGTGTTTTACTCACCACCGCTGCTATTTCTGGTTCACTGCCGATGTGTTCTAGCCTCAATCTTCAAACTCTTCGATATCAATTATTAAGTTTTTCTTTTCTTTTTTCTTTTATGTCTACCATTATCTAGTTACTCATTGCCTACTGTCTATCTTCAAAGTTCAACATCTTTTATATGTTCTTTTTACCCACTGTCATACGTTGTCCCCTAATCTTCAAACTCTTTTACATGTATCATTTCATATATATATATATTAGCCACTGTCGTTTTCCAATCCTCAAAGTTCAAGCGTTTTTAGATTTTTCTTCTTAAATCTATCAAAGTTAGCCACGGTTGATCTTCAAAGTTGAAACTCTTTTATATATATATTTTCAAGTGTATAAAGTTGGCCATTGACATCTTCAGACCCTTTTAAGTTATATATGTTTTTTTCTTTGTTAAATGTTAGGATGACATCTACAAACTTTAGCCATTGTCAATCATCAAATAGTTCCATGGAATTTACCTCCTTTGAAGATGATTTAGAACTCCTATAGTGGATTAAGATTCAACAGCTAAGTGATGGGGTGAAAATTTTCATGGAAATGCAACTTTTATCATGTCACAAAGAAGAGCTCACATACAAGAGTCAAAGCTCACTTGTTGAAGATAAATGGTGAGGAGTTGGGCCCTGTCTAAACGTCACTCTTAAAGATACGGCTGATATGCAAAAATTAGAAGATGGGCCAAACATTCGAATAGAAAGAAAGACTCCTAAAAATGTTACTTTGCCACCCTTAGCCATATCAATTAGCGGAGTTAATGTGAGTAAGTCTCGCACTGAGTAGCTTTGACTTAGAGAACAAGAAAAGAAAGGGCAGTACAAGTCAAAGTGCACTTGAAAGATCATTCAACAAGATATCACAAGACCAAGTGGATATGCTTAATGCTTGAATGTTTTATTGTGTGAGCTTTCCGTTTAATTCAACGAGGAATCCACATTTTATAGGTGCCTTTACTTGTGTCACAAACAATCTGTTGTTGGAATATATGTCTCCTGTATATAATAATGTTAAAGATAAGTCTTCTCCAAAGAGAAAAGACAAATATTGAGAGATTATCGGTACCTATTAAAGGTGAATGACGTAAAAGGAAGGAGTATTGTGAGCGATGGATGAAGTGACTCACAAAGGAGGCCGTTGATTAACTTCATGTCCATTTTTTATGGCAAACCAACGTCTCTAAAGTCAATGGATTGTTTTGGTGAGATCAAAGATAAGTAATTCATTGAAAATTTGATGGACAATTAATGAAGTTGGTCACAAGTGATAATAGATAATGCTCTTATTGACAAAGGTGCAGGACAAATTAACGAAGCATAATTTTTTACGATTATAAAAATTATAAATAAGTAAAAGAATTGCAAGTTAAAAATCACTTTTGGTTCTTGAACTTTCATGAGGTGGCAAAATTTAGTCCCTGATTGTAATGTGCTCTTATACTTTCAATTTGTAAAAATTTAATTCATTTAACTTTCAAATGTGTAATAGTTTAATTATTCCCATGAAATTTTCTTTAAAATTAGAAGTCCATTTTTATATTAATAGTTTTTGACTTTGTACATAAACATGCTCCAAGGTTTAAAATATCAATGTCGACAAAATGTCAAGGTCCTAATTATATGGAAATGTTGATGGAACTTCGATAATTGTGCATGGTGTCCATACAATCATCGGAAGTTGTGCGTCAATAATTTGTCCTACACCTTTGCTTGCAATTAGGAGTATTATCAGTTATCACTTGAACAACATTCTCATATCTAACTTCAATAATCACTTCTTTCATCAAATTTGCAATGAAGTATTTATCTTTGATCTCACGAACAATCCACCATAAAAAATGGTCTTGAAGTTAATCAATGACCTCCTTTGTGAGTAACTCCATCCATCACTCCCAATACTCACTCTCTTATTATGTCATTCACCTTGCATAGGTACTAATAATCTTTCAATATTTGCCTTTTCTCTTTGGAAAAAGACTTGTCGTCAACATATTAAATCCAGGAAGCACATATCCTGTTCATATCCTGACAACAGATCATTTGCGGCATAAGTAAAGATACCTATAACATGTGGATTCCTCACTAAATGAAACGACAAGCCAACAAAATAGAACATTCGAGCAATAAGCGCATCCAATTGGTATTGTGATGTCTTGTAGAATGATTTTTCAAGTGCATTTGTACTACCCTTTCTTTTCTTGTTCTCTAAGTCAAAGCTACCAGTGGAAAAATCATCAAACTATTGATTGATATGACTTAGGGTGGTTTAGGTGGCAAAGAAACTATTTTAGAAGTTTTTCTTTCTATTCGAATGTTTGTTTCATCTTCAAAATTTAGCATATTAGCTATACCTTTAGGAGTGACTTTTAAAGACAGCCCAACTCCTTAACTATTTATCTTCAACAAGTGATAATTCTTGGTTATGGACTCTTTGTGACATGACAAAAGTTGCATTGCCATGAAAAATTTCCACCACCCATTATTTAACTTTTGAATCTTAGTCACATATTGCCGTAGGGGTTTTGAATCATCTTCAAAGGGGGAAGATTCTATGGAACCATTTGATGATTGGTAGTGGCTAGAGTTTGTAGATGTTATCCAAACAACGCAAAGAAAAAAAACAACATATATATATATATAATGCAGAAGGGATTAAGATGACAGTGACCAACTTTGATACACTCGAAAGGAAAAAAAAGAAAAATATATATATATATATATATATATAAGAGTTTTAGAGTTTCAACTTTGAAGATCGACAATGGTTAACTTGATAGATTTAAAGAAAAAAATCTAGAAAAAGTTTGAAGTTTGAGGATTGGTAAACAACACTGGCTAATATATATAAATGTAAGAGTTTGAAAATTGGAAAACGGCATACGACCATGGGGCAGTGGCTTAAAAATACATTTATAAAAGAGGTTGAATTTTGAAGATAGTCGGACGACGGTGGGTAACTTGGTAATTATAGACTTAGAAAAAAAACATACTTGATAGTTGATATCATAGAGTTTGAAGATTGAGGCTAGAACATATCGGTGGCGAACAAAGAACAGCAGCGTCGGCGACAACTTTTGCTCCAATGAGAAGGAGAATAGAGAAGACTACTGTTTCTTTTTTCCTTTTCTTTCTTTTATGTGAGTGTCTCGGCTAGTTTACGTGCTCCTCCACTAATCTCACGAGACAACTCGCCTAACCCTACAACATTTGGGTGTTAAGGAAACCCGTAAGATATTAAATCCAATAGGTGGTCACCATGGATTGAACTCATGATCTCTTAGCCCTTTATCAATGTCATGCCCTCTATTTACTACTAGGCCAACCCATAATGGTTATTTAGAAGACTACCGTGCTTGTTCGTTTTCGTGAACTGCATGACAAGAGTGAGAGGGGAGTTGACAAGGTTATGTTATATAATGTTTAGTTTTTACTTTTTAGGTTTTATGTTTTTCTTTTTCATCTTTGTTTAAAAAGATAGTTATTGGGCTTCAAATTTGGGCCCATACTTCAAACAATTGTTTCTTAAATCTTTCTCGTATCCTTACTGTGTCTCAACGTGTCTGAATGTTTTTTTTAGAAAAACAAAAATAGGACATGCAAATTGGCATTTTGGATGCATCCCCATGTGACAAAACAAATATGTGTCTGACATTGATACCACCATTAAAATGAAGTGTCCGTGCTTCGTAGTGAGAGGGCTGGTATGTGGTATCTCTCTCCCATTTTAGAACCTCAGGAAAATGCAAATGTCCCTATTCCCGTGCTCATTGAAGATGCATAAGATAAATAACTGTCAGACCCAACTTTTCCCATGTTACCTCTCCTAAGATATGTTTTTACAATTGGAGGCCTTACAAATTACTGTGTATACTTTTCTTCTCGATGCTCTTTTGTTTGAAATCCTATAAAATTGCTATTCCAAATATCTCAAGGTGAAGGCTGTAGTATTATTTGTTTTTGGTTTGTTTTATTCTGCCGGTAGATATAAGCTAAATATCTAATATGCCAAACTCATTGTTTCGACAGAATCTAGTAAATGGTTATGTGTTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCCGCCAAGGGGAGTTAA

mRNA sequence

ATGAGCATTGCAGAAGTTGTGTCCTTTGCTACAACAGTAGGCAGAAGCGCTGGCCGGGTAGGAAGAATAATTGGGAAAAGGCTTCATCACAACCTAGGAAAATTGCAAAAGACCCTACCAAGAATGCGATTCAAGTGTGGCAAAATCAGGCATCTTTCCAACGTTGCCCTCAAAGAAAAAAATCTTAGAATTCAAAAAGGCAAGAAGACCAAGAAGAAATCAATCTTGATGAGCAAAAGTGAAGATGTTGCTTATGCAGAGCCCGATAATGGATCATTATTTGAAGGTATTGATGAAGCCAAGTCCGCTCTAACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTAACATTTCCATCGGTTGAGCTTGCACAACATGCTTTGAATCTAGTAAATGGTTATGTGTTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCCGCCAAGGGGAGTTAA

Coding sequence (CDS)

ATGAGCATTGCAGAAGTTGTGTCCTTTGCTACAACAGTAGGCAGAAGCGCTGGCCGGGTAGGAAGAATAATTGGGAAAAGGCTTCATCACAACCTAGGAAAATTGCAAAAGACCCTACCAAGAATGCGATTCAAGTGTGGCAAAATCAGGCATCTTTCCAACGTTGCCCTCAAAGAAAAAAATCTTAGAATTCAAAAAGGCAAGAAGACCAAGAAGAAATCAATCTTGATGAGCAAAAGTGAAGATGTTGCTTATGCAGAGCCCGATAATGGATCATTATTTGAAGGTATTGATGAAGCCAAGTCCGCTCTAACTGTGAAGCTAATGCAGGAGGGAAGAATGAGGGGCCAAGCATTTGTAACATTTCCATCGGTTGAGCTTGCACAACATGCTTTGAATCTAGTAAATGGTTATGTGTTCAAAGGCAAGCCAATGATTATCCAGTTTGGACGCAATCCAGGAGCCGCCAAGGGGAGTTAA

Protein sequence

MSIAEVVSFATTVGRSAGRVGRIIGKRLHHNLGKLQKTLPRMRFKCGKIRHLSNVALKEKNLRIQKGKKTKKKSILMSKSEDVAYAEPDNGSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAKGS
Homology
[Close]
BLAST of Clc02G09860 vs. NCBI nr
Match: XP_038903908.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Benincasa hispida])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-29
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG
Sbjct: 287 GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 346

Query: 151 RNPGAAKGS 160
           RNPGAAKG+
Sbjct: 347 RNPGAAKGN 355

[Close]
BLAST of Clc02G09860 vs. NCBI nr
Match: XP_022152394.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Momordica charantia])

HSP 1 Score: 136.0 bits (341), Expect = 2.9e-28
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF GID+AKSALTVKLMQEGRMRGQAFVTFPS+ELAQHALNLVNGYVFKGKPMIIQFG
Sbjct: 290 GSLFGGIDDAKSALTVKLMQEGRMRGQAFVTFPSIELAQHALNLVNGYVFKGKPMIIQFG 349

Query: 151 RNPGAAKGS 160
           RNPGAAKGS
Sbjct: 350 RNPGAAKGS 358

[Close]
BLAST of Clc02G09860 vs. NCBI nr
Match: XP_022972081.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_022972082.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_022972083.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima])

HSP 1 Score: 135.2 bits (339), Expect = 5.0e-28
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFG
Sbjct: 294 GSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFG 353

Query: 151 RNPGAAKGS 160
           RNPGAAKGS
Sbjct: 354 RNPGAAKGS 362

[Close]
BLAST of Clc02G09860 vs. NCBI nr
Match: XP_023540623.1 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540624.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo] >XP_023540625.1 U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 135.2 bits (339), Expect = 5.0e-28
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFG
Sbjct: 294 GSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFG 353

Query: 151 RNPGAAKGS 160
           RNPGAAKGS
Sbjct: 354 RNPGAAKGS 362

[Close]
BLAST of Clc02G09860 vs. NCBI nr
Match: XP_008448178.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-27
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPS+ELAQ ALNLVNGYVFKGKPMIIQFG
Sbjct: 291 GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQLALNLVNGYVFKGKPMIIQFG 350

Query: 151 RNPGAAKGS 160
           RNPGA KGS
Sbjct: 351 RNPGAVKGS 359

[Close]
BLAST of Clc02G09860 vs. ExPASy Swiss-Prot
Match: Q8RWV8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP65 PE=1 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.0e-23
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GS FE  + AKS+L V+LMQEGRMRGQAF+TFPSVE+A  ALNLVNG+VFKGKPMIIQFG
Sbjct: 373 GSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFG 432

Query: 151 RNPGAAK 158
           R PGAAK
Sbjct: 433 RTPGAAK 439

[Close]
BLAST of Clc02G09860 vs. ExPASy Swiss-Prot
Match: Q96IZ5 (RNA-binding protein 41 OS=Homo sapiens OX=9606 GN=RBM41 PE=1 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-10
Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 0 

Query: 75  ILMSKSEDVAYAEPDNGSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNL 134
           +L  K+      E D  SLF    E K       M  GRMRGQAF+TFP+ E+A  AL+L
Sbjct: 310 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHL 369

Query: 135 VNGYVFKGKPMIIQFGRN 153
           VNGY   GK ++I+FG+N
Sbjct: 370 VNGYKLHGKILVIEFGKN 387

[Close]
BLAST of Clc02G09860 vs. ExPASy Swiss-Prot
Match: F1Q8J0 (RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.4e-09
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 98  DEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRN 153
           +E ++   + LM+EGRM+GQAF+  PS   AQ AL   NGYV K KP+++QF R+
Sbjct: 434 EEERNMFDIVLMKEGRMKGQAFIGLPSERSAQKALKETNGYVLKDKPLVVQFARS 488

[Close]
BLAST of Clc02G09860 vs. ExPASy Swiss-Prot
Match: Q3UZ01 (RNA-binding region-containing protein 3 OS=Mus musculus OX=10090 GN=Rnpc3 PE=2 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 106 VKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRN 153
           ++LM+EGRM+GQAFV  P+ + A  AL   NGYV  GKPM++QF R+
Sbjct: 455 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 501

[Close]
BLAST of Clc02G09860 vs. ExPASy Swiss-Prot
Match: Q5R6C7 (RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-08
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 106 VKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRN 153
           ++LM+EGRM+GQAFV  P+ + A  AL   NGYV  GKPM++QF R+
Sbjct: 457 IRLMKEGRMKGQAFVGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 503

[Close]
BLAST of Clc02G09860 vs. ExPASy TrEMBL
Match: A0A6J1DFW4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020131 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.4e-28
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF GID+AKSALTVKLMQEGRMRGQAFVTFPS+ELAQHALNLVNGYVFKGKPMIIQFG
Sbjct: 290 GSLFGGIDDAKSALTVKLMQEGRMRGQAFVTFPSIELAQHALNLVNGYVFKGKPMIIQFG 349

Query: 151 RNPGAAKGS 160
           RNPGAAKGS
Sbjct: 350 RNPGAAKGS 358

[Close]
BLAST of Clc02G09860 vs. ExPASy TrEMBL
Match: A0A6J1I4Z6 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111470724 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.4e-28
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQHALNLVNGYVFKGKPMIIQFG
Sbjct: 294 GSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQHALNLVNGYVFKGKPMIIQFG 353

Query: 151 RNPGAAKGS 160
           RNPGAAKGS
Sbjct: 354 RNPGAAKGS 362

[Close]
BLAST of Clc02G09860 vs. ExPASy TrEMBL
Match: A0A1S3BJY8 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490451 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.4e-28
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPS+ELAQ ALNLVNGYVFKGKPMIIQFG
Sbjct: 291 GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSIELAQLALNLVNGYVFKGKPMIIQFG 350

Query: 151 RNPGAAKGS 160
           RNPGA KGS
Sbjct: 351 RNPGAVKGS 359

[Close]
BLAST of Clc02G09860 vs. ExPASy TrEMBL
Match: A0A6J1EXB4 (U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111439218 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.3e-26
Identity = 64/68 (94.12%), Postives = 65/68 (95.59%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF GIDEAKSALTVKLMQEGRMRGQAFVT PSVELAQ ALNLVNGYVFKGKPMIIQFG
Sbjct: 294 GSLFGGIDEAKSALTVKLMQEGRMRGQAFVTLPSVELAQQALNLVNGYVFKGKPMIIQFG 353

Query: 151 RNPGAAKG 159
           R+PGAAKG
Sbjct: 354 RSPGAAKG 361

[Close]
BLAST of Clc02G09860 vs. ExPASy TrEMBL
Match: A0A7I8JF77 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_11014446 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 57/69 (82.61%), Postives = 63/69 (91.30%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GSLF G++E KSAL +KLMQEGRMRGQAFVTFPS +LAQHALNLVNG+VFKGKPM+IQFG
Sbjct: 408 GSLFSGVEETKSALNIKLMQEGRMRGQAFVTFPSTDLAQHALNLVNGFVFKGKPMVIQFG 467

Query: 151 RNPGAAKGS 160
           RNP AAK S
Sbjct: 468 RNPSAAKPS 476

[Close]
BLAST of Clc02G09860 vs. TAIR 10
Match: AT1G09230.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-24
Identity = 53/67 (79.10%), Postives = 59/67 (88.06%), Query Frame = 0 

Query: 91  GSLFEGIDEAKSALTVKLMQEGRMRGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFG 150
           GS FE  + AKS+L V+LMQEGRMRGQAF+TFPSVE+A  ALNLVNG+VFKGKPMIIQFG
Sbjct: 373 GSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMIIQFG 432

Query: 151 RNPGAAK 158
           R PGAAK
Sbjct: 433 RTPGAAK 439

[Close]
BLAST of Clc02G09860 vs. TAIR 10
Match: AT1G67770.1 (terminal EAR1-like 2 )

HSP 1 Score: 42.7 bits (99), Expect = 3.1e-04
Identity = 22/43 (51.16%), Postives = 25/43 (58.14%), Query Frame = 0 

Query: 115 RGQAFVTFPSVELAQHALNLVNGYVFKGKPMIIQFGRNPGAAK 158
           R Q FV F  V  A  AL ++NG V  GKPM+IQF R  G  K
Sbjct: 219 REQRFVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPGGLTK 261

The following BLAST results are available for this feature:
BLAST of Clc02G09860 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903908.13.4e-2998.55U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Benincasa hispida][more]
XP_022152394.12.9e-2895.65U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Momordica cha... [more]
XP_022972081.15.0e-2897.10U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita maxima] >XP_02... [more]
XP_023540623.15.0e-2897.10U11/U12 small nuclear ribonucleoprotein 65 kDa protein [Cucurbita pepo subsp. pe... [more]
XP_008448178.11.1e-2795.65PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 [Cu... [more]
BLAST of Clc02G09860 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8RWV85.0e-2379.10U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Arabidopsis thaliana O... [more]
Q96IZ51.7e-1046.15RNA-binding protein 41 OS=Homo sapiens OX=9606 GN=RBM41 PE=1 SV=2[more]
F1Q8J05.4e-0949.09RNA-binding region-containing protein 3 OS=Danio rerio OX=7955 GN=rnpc3 PE=2 SV=... [more]
Q3UZ013.5e-0855.32RNA-binding region-containing protein 3 OS=Mus musculus OX=10090 GN=Rnpc3 PE=2 S... [more]
Q5R6C73.5e-0855.32RNA-binding region-containing protein 3 OS=Pongo abelii OX=9601 GN=RNPC3 PE=2 SV... [more]
BLAST of Clc02G09860 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DFW41.4e-2895.65U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 OS=Momordica c... [more]
A0A6J1I4Z62.4e-2897.10U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita maxima OX=36... [more]
A0A1S3BJY85.4e-2895.65U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X2 OS=Cucumis mel... [more]
A0A6J1EXB42.3e-2694.12U11/U12 small nuclear ribonucleoprotein 65 kDa protein OS=Cucurbita moschata OX=... [more]
A0A7I8JF771.6e-2482.61Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_11014446 PE=4 SV... [more]
BLAST of Clc02G09860 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G09230.13.6e-2479.10RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT1G67770.13.1e-0451.16terminal EAR1-like 2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 93..144
e-value: 2.3E-7
score: 30.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 73..152
score: 10.684241
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 85..157
e-value: 1.7E-14
score: 55.8
NoneNo IPR availablePANTHERPTHR16105UNCHARACTERIZEDcoord: 91..157
NoneNo IPR availableCDDcd12239RRM2_RBM40_likecoord: 91..150
e-value: 1.8661E-29
score: 101.101
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 93..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G09860.1Clc02G09860.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005689 U12-type spliceosomal complex
molecular_function GO:0097157 pre-mRNA intronic binding
molecular_function GO:0030626 U12 snRNA binding
molecular_function GO:0003676 nucleic acid binding