Clc02G09807 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09807
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag-pol polyprotein
Location	ClcChr02: 14412589 .. 14418892 (-)
RNA-Seq Expression	Clc02G09807
Synteny	Clc02G09807

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGACTGATTTTCCCTCATTTTCAAGCTCAAACCGACTCCATCTTTCAGCTGAGCTTCAAGAGGATATAGAAAAAGATATTTGGGGCAAATTTTTGTAGAATTTTGGTCAGTTTCGTGGTGTAATTGAAGCTGAAACAAAAGATTTGATTGTTGTCACGCAGTTTGAGCAAAGTCTGGTGTTTGGTGAATAGCAAGCTGAAGAGACCATGTTTGAAGTTGAAAATTTGAGGGTCGTAAGTTAACGCAATTCTTAACAACTCTTGTGAGGGATGATTGAGTTGAATATGAAGAAAAACATGTTTAATTGTAGATGGAAGTGACTGATACGGATTTTCTGAGTGATCTGAAGCAGGGCAAAGTAAATTAGGAATAGTTGTTGAACAAAGAAGAGTTAAGCTCTGACATTTTGAGGTAAGTTAGAAAACGCATTTCTCTACAAGTTTGTAGAAGGAAAGCAATTCTAATTCGGGCTGAAAATGCAACTTTTAACAGATGGAAGTGAAGACAGAAGCGAAGACAGAAGCTGTGGGAGACGTGTTTCGCTGGAAAATGCAACGACATTGAAGGCGTAAGGGTGAGCAGCGAGAAGAGTCTCGCTGGTGTCCCTGGTTGCTTTTTGTTTCACAACTCTCGCTAGTCTCACTGGTGTCACTACTCTCGCTACTCTCGCTGGTCATGTAAGTCTCGCTGGTTTTGCCTAGTCTCGCTAGTCTCGCTAGTTCTATAATTTTGTTAGTAGTTGGTCTCGCTAGTGAGCTTTATCTTAATGCTCAAAACATATTTGCTACACTTTAATAGGAATTCTAAGGAATCTAACAAAGGAAATTAAAACATTTCAGGCCGAGAGGAGCTAGAAAAGGCGTATAACCCTTTAAGGGCCTAAGACAAGTAGTGAGTGAATTTTATTTAAAATGAGTTTACTTTAAACAAAGTTTTCATGATATATGATTATGTTTGGAAACATATTTATATGTTTATGCTTTTCACGGGTTTTAACATGCTATGAGGATTTTTTGCTTGAAAGTAAGTATGTGTTTCCATGTACGTGCGTATTATGTTTTTTACATTGGAAATCATTTGAAGCATGCTAGTTGGTAAACAAGTTTTACGAAAGGCATGCTATTTATTAACCTATGATTTTATGGAAAGCATTGATGATTGTTAATGAGTTTGTGAAGATTTGAAATGTTATAAACTCGTGAATTTTTATTATGCTATTTTCAAAGCATGTTGTTTTTTAATAATATTTTTGAAAAGGCTCCCAATGCTGAAGGATACGGAGAAGGCAATGTGGGTAGCCAGGATATAGAAATGGTTCTCAATGCTGAAGGACTCAGAGAAGGCATGTGGGTAACCTGAGTATAGAGATAGCCCCCAATGTTGAAGGACTCGGAGAAGGCATGTGGGTAGCCTAAATCTCGTTTATGGAACCCGGTATTGAAGAACTTGAGAAGGTATATGGTTAACCTAGGATATGATATCTATGTGCACATAGAGGTATGATAGACGTTGTTGTGTTGAGACTATTCCACACAGCTAAGGATATTTGATGTTGGGTGTGTCGAGATTACTCCCTTCTAACTAAGGAGGTTTCGACATTGAGTAGCGTTGAGCTCCACTCTGCCTCAACTAAGGAAACTATGATTGAAATGTATTGTACTTACATGGTTTTCCTTTAGAATTGATACGTAGGTGATTTGATAATGTTACCTGAGCATGATTTGTTTGGATACAGAAACGATTTATTACTGTTTATTTGTTTTCATAACTTGATTACAGTTTTGATTTAATTATGAATCAAAGAAGGTTTTTACAAAACAAGTTACTCATTGGGCAACCTAGCTCATGTTTTTTTTCTCTGTTTTCTGTTTTTCAGGTAGCGAGCGAGTCCGAGGTGCTTAGCCTACACAGCAACTCGGCTGGGCTCACCATCAGTGTCTTGAATTTTGAGAATTGTAAATATTTGATCTTAAACCTATGTTGTACATATAGAGGATTAAGGGACAGAAGTTAGTTAACTTGTGTAAATTAAAGGTTGAAGATAAATCTGTATTATCATGATAGCTTAACCTTAGTTAAAGTTGGATGTTAAATTATTGTGTATGTCTGCTTATTAGGTGTTGGTCAAGGTATAAGGTTGACAGTGGATGCCGTAAGAGGGTCGGTGTCTGCTGTCCTCACATTTTCTCCTAGGTTAAGAGGGTACTTGGAAAGGGGTGTGATAGCATATCTTTGTGATATTTTTTCCTTAATGGCTCTTGATTATTTCCTTTCATGAGGTATTTATATGTGGATAGTTTGTGTCGTCTAGGGAAAGCAACTTTTATCTCTTTGTTAGAACTCTAATCAGAAAGCTTGGTTCTGAACGTACTAAGAAAAAGGATTTTGTGTTACTCGACTGCAGTATGATTTTGAAGTTGTAGGTGGTAATGTGTTTTCATCCTGCTGACAGTGAACTAGTGTTTTTGACATTACAATCTGCATGGTGCATTACATCCTAGTTGAATGGTGATTCAACTATTGAATGAAAAGATAGAATACTAGTTGTCGCGCATCATCAGATTGAGGAGGAGCCCAATCTGATATCTCTTCTCCAAGGAGCACTATATTTAAAGGCAACCTAAACTTCCTTACTAGTGGTTATTTGTTAGACTTCTTGCTTGTAATCAAGTTGTAATAAGAAGTTGTAAACACAAAATATAACTAGTGGAACTCTTTTCATTCAGGCTCAAAGCCTCCTAAACGTAAGTGTGATTACATCAAACTGGGTTATCAATTCTGCGTGTTATATCTTTTACCTTCTCTTTGTCCCTTTTGTTGTACATTTGTTAGTAACATATTTACACATTTTCTATACCAGTTGTGCTATGCCTAAATTTCAATTGGTATCAAAGCCTGGTTGGCTTTCTATACATTGAGATATTTAATGGAGCCTATCAGGGAAGGTGGATTAACAACTCATCCTCCCGTACTCGATGGTTCAAACTATTCGTATTGGAAGGCTAGGATGACAACATTCTTGAAATCCATTGACAACAAGACTTGGAAGGTCGTCATCTCTAGATGGAGTCTGCCTCAAGTCACCGACATAGAAGGAAAGGTTTGTCCTGAGCTTGAGAAAGATTGGACAGAGGATGAAGATGGTCATCCTTAGGGTATTCTCGGGCATTCAATGCCATCTTCAATGGTGTAGATAAGAATATCTTTCACCTAATCAATACTTGTGTGTCTGCCAAAAAAGCATGGGATATTCTTGTTGTTGCACATGAAGGGACCTCCAAAGTAAAAATGTCTAGACTGCAACTCTTGACCATAAAATTTGAATCACTGAAGATGCTGGAAGAAGAGACTATAATAGAGTTTAATGATCGGCTCTTGGATGTTGGAAATGAATCATTTTCTCTTCGCGAGAAGATATCAAAAGAAGAGTTAGTGCGTAAGGTTCTTCGCTTGCTTCCAAAAAGATTTGATATGAAAGTCACAACTATTGAGGAGGCTCATGGCATTGCCACTATGAAAGTTGATGAGCTTTTTGGATCTTTGCGCACTTTCAAAATGTCGTTTGATGACAAGCATGATAAAAAAATCTAAGAATATAACATTATAGTCAACCTATAAAAATGATGCTTATGTTGTCAAAATTAAGGAATCTGATGAGAACGTGGCTCAATCGATATCGCTTCTCACCAAACAGTTTGGAAAGGTGCTCAGAAGATGGGACAAACGTGGAGGATATCGGGATAACCATGTGCCTCCTAATCAAGATAGCAAGAGTCCCAATAGTCACTCGAACCTGAAGTCTTCTAGACTATCTGAAAAAAAAAACCGAATATTTGAAAGGATTTGGAAGTAGTCAAGAATCGGGAGACAAAAAAATTAGATGTACAGAATGTGAAGGATATGGCCACTACCAAGCTGAATGGCCGAATTTCTTAAAAAGGAAGAACAAGAGTTATTCTGCCACATTATGTGATGCTGATGAGGATGTTGAATCTAGCAACGACTCTGATGAAGAAATTCGTGCTTTAATGGGTTGTTTGTCTCCTATAAGTTCCCAAGTGACTTTTCCTTCAGACATCGTGACGGACGTGGCTTTTGAGAGGACTCGAGAAGTTAAGTCTGATCATCACCAACTCCCATTAGAAGAGGTTTATTAGCATTGGATTGAAGACGCTCAAGCCATTACTGTCTAGAAATAGATAATCGAAAAATTAATGGAAGACAATCACCCTCTCTTGAGTACTATATTCGAATTGAAGAAGGAACTGAAATCCTCTAAAGTCGAGCTTGAAGCGATGACCAAGTCAATCCGCATGTTGAACTCCAGCACCGATGATATGAATAAGATTTTGTCTTGTGGAAAGCAAGTATCAGACAAGAGTGGGGTTGGATTTTCTCACTCGGAAAAACATGTCATTAGAGAATAATCATCCTTGTCCCACCTTTTTTTTCCTGCCAAATCCTTCCAAGTGTCTACTGAAGCATCGCTAAAGAAAGTGCAGCCTACTTAGTTCTCTAGACATAAAGCTAAGAAGAGGTGGATCTGTCATTACTGTAGAAAAGAAGGGCACATTCGTCCTTTCTGTTTTTGTCTACATGGTGGATTAGTTTTCCAAAGACAATAAAAACCTTCTCATAAAAATCAAGTTGTTGTTCAGCCTGTCAGGAACACGAGGCACAACAAGTTTGAATGGAGAGTCAAACACTCTAGAGAAGCTTCCAATGCGAGATGTCTAGTTGATCTCACATCAAATTCATTCTTCAACCCGAAGAGACTGGCATTTTGACAGTGGTTGCTCTCATCATATGATAGGAGAAAAGTCCTTTATAACGAATATATAACCGTGAAGTTCAAAGCATGCGACTTTTGGTGATGGTGGAAAAGGAAAGGTGATCGACAAGGGTCGATTGAACTACCCTTGTTTTCCTATGCTTTAGGATGTCATTCCCGTAAAAGGGTTAACTACAAACTTGATCAACATTAGTCAACTATGCGACCAAGGTCTCTCAGTGAGCTTCTCTAAGGATAAGTGTATTGTGACTGACACAGATAATACTATTGTCATGACAAGGACTCGCTCTTTTGACGACTGTTATCTATGGAATTTCGATCTTTCCTCAAATCTTTGTATCTATACAAGAAACAATGAAGCATTTCTCTAGCATAAGAGACTCGAACACATCAGCTTGCGATCTATTAGAAAAGCTATTGCGGAAGTAGTTGTCCTCGAAATTCTTCCGCTCTCAGAAAACTATGACAGTGTGTGCGATGACTGCCAAGTAGGAAAACAAGTTAGAGTCTCTCACAAGAGAGCTCTGGTCTGTACTACCAAACATGTTCTTGAACTACTTCACATTGACTTGATGGGTCTAATGCAAGTGGAAAGTTTGGAAGGAAAAAAATATGCTCTTGTCTGTGTCGATGATTTCGCACGATATACCCGGGTGAAGTTTATAAGAGAGAAATCAAATACCTTTCATGTTTGTCAAACTCTTTGTTGCCAACTTCAGAGAGAACAAAAGGTACAGATTTGTCTTCGAAGTGATCATGGAAAAGAGTTTATGAACTTTTAGTTTGAAGATTTTTGTAATCTGGAAGGGATTATGCATGAATATTCATCTTCTATCAGTCCTCAACGGAATGGAGTTGTAGAAAGGAAAATTTGCACTTTGCAAAAGATGGCAAGGGCAATGCTGCATGGGAAGAATTTGCTCTTACTTTTCTGGGCAGAAGCGCTTAATACAGCTTGTCACATGCATAATCGAATCTCTCTACGCCCTGGTACTACTCAGACGAATTATGGACTATGGAGAAGGAGGAAACCCAACATCAAATACTTCCACATCTTCGAAAGCATTTGTCAGATTCTTGCAGATAGAGAGTATAGAAAAAAATGGGATTCCAAGTCAGATGTTGGAATCTTTCTGGGATACTCTTCAAACAGTAGGGCCTACAGAGTATTTAATAACCGTACTCAATCTTCCATGGAATCAATCAATGTAGTTATAGATGATCACCACCGAAATTGTGCCAGATGGAGAGACAGTATGTTGATGTTCCCATATGATACACATGTTCTTGCTGATAAAGATAAGAACCTAGTGCCAGTTGATAAAGACAGTGAGAGTAGTAATTTAGACCCTAAAGAATCTGTATCTGACCAGATAAAGTGTTCTAGCAAAATTAAGAAAAATCATCCTTTGGAGAACATTATAGGTGACTTAAACTCTGGAGTCACAACTCGAAGGAAGGATAAAGGTTGGGGAAAAGCTATCATCTTTCTGGCGAATAAAACTTAG

mRNA sequence

ATGCCGACTGATTTTCCCTCATTTTCAAGCTCAAACCGACTCCATCTTTCAGCTGAGCTTCAAGAGGATATAGAAAAAGATATTTGGGGCAAATTTTTACAGAAGCGAAGACAGAAGCTGTGGGAGACGTGTTTCGCTGGAAAATGCAACGACATTGAAGGCGTAAGGGTGAGCAGCGAGAAGAGTCTCGCTGGTGTCCCTGGATACGGAGAAGGCAATGTGGGTAGCCAGGATATAGAAATGGTTCTCAATGCTGAAGGACTCAGAGAAGGCATGTGGCCTAAATCTCGTTTATGGAACCCGGTATTGAAGAACTTGAGAAGGTATATGGTTAACCTAGGATATGATATCTATGTGCACATAGAGGTAGCGAGCGAGTCCGAGGTGCTTAGCCTACACAGCAACTCGGCTGGGCTCACCATCAGTGTCTTGAATTTTGAGAATTGTAAATATTTGATCTTAAACCTATGTTGTACATATAGAGGATTAAGGGACAGAAGTGTTGGTCAAGGTATAAGGTTGACAGTGGATGCCGTAAGAGGGTCGGTGTCTGCTGTCCTCACATTTTCTCCTAGGTTAAGAGGGGAAAGCAACTTTTATCTCTTTGTTAGAACTCTAATCAGAAAGCTTGGTTCTGAACGTACTAAGAAAAAGGATTTTGTGTTACTCGACTGCACCTGGTTGGCTTTCTATACATTGAGATATTTAATGGAGCCTATCAGGGAAGGTGGATTAACAACTCATCCTCCCGTACTCGATGGTTCAAACTATTCGTATTGGAAGGCTAGGATGACAACATTCTTGAAATCCATTGACAACAAGACTTGGAAGGTCGTCATCTCTAGATGGAGTCTGCCTCAAGTCACCGACATAGAAGGAAAGGTTTGTCCTGAGCTTGAGAAAGATTGGACAGAGGATGAAGATGCATGGGATATTCTTGTTGTTGCACATGAAGGGACCTCCAAAGTAAAAATGTCTAGACTGCAACTCTTGACCATAAAATTTGAATCACTGAAGATGCTGGAAGAAGAGACTATAATAGAGTTTAATGATCGGCTCTTGGATGTTGGAAATGAATCATTTTCTCTTCGCGAGAAGATATCAAAAGAAGAGTTAGTGCGTAAGGTTCTTCGCTTGCTTCCAAAAAGATTTGATATGAAAGTCACAACTATTGAGGAGGCTCATGGCATTGCCACTATGAAATCAACCTATAAAAATGATGCTTATGTTGTCAAAATTAAGGAATCTGATGAGAACGTGGCTCAATCGATATCGCTTCTCACCAAACAGTTTGGAAAGGTGCTCAGAAGATGGGACAAACGTGGAGGATATCGGGATAACCATGTGCCTCCTAATCAAGATAGCAAGAGTCCCAATAGTCACTCGAACCTGAATAGTCAAGAATCGGGAGACAAAAAAATTAGATGTACAGAATGTGAAGGATATGGCCACTACCAAGCTGAATGGCCGAATTTCTTAAAAAGGAAGAACAAGAGTTATTCTGCCACATTATGTGATGCTGATGAGGATGTTGAATCTAGCAACGACTCTGATGAAGAAATTCGTGCTTTAATGGGTTGTTTGTCTCCTATAAGTTCCCAAGTGACTTTTCCTTCAGACATCGTGACGGACGTGGCTTTTGAGAGGACTCGAGAAGTTAAGTCTGATCATCACCAACTCCCATTAGAAGAGATAATCGAAAAATTAATGGAAGACAATCACCCTCTCTTGAGTACTATATTCGAATTGAAGAAGGAACTGAAATCCTCTAAAGTCGAGCTTGAAGCGATGACCAAGTCAATCCGCATGTTGAACTCCAGCACCGATGATATGAATAAGATTTTGTCTTGTGGAAAGCAAGATGTCATTCCCGTAAAAGGGTTAACTACAAACTTGATCAACATTAGTCAACTATGCGACCAAGGTCTCTCAGTGAGCTTCTCTAAGGATAAGTGTATTGTGACTGACACAGATAATACTATTGTCATGACAAGGACTCGCTCTTTTGACGACTCTATTGCGGAAGTAGTTGTCCTCGAAATTCTTCCGCTCTCAGAAAACTATGACAGTGTGTGCGATGACTGCCAAGTAGGAAAACAAGTTAGAGTCTCTCACAAGAGAGCTCTGGTCTGTACTACCAAACATGTTCTTGAACTACTTCACATTGACTTGATGGGTCTAATGCAAGTGGAAAGTTTGGAAGGAAAAAAATATGCTCTTGTCTGTGTCGATGATTTCGCACGATATACCCGGGTGAAGTTTATAAGAGAGAAATCAAATACCTTTCATGTTTGTCAAACTCTTTGTTGCCAACTTCAGAGAGAACAAAAGTTTGAAGATTTTTGTAATCTGGAAGGGATTATGCATGAATATTCATCTTCTATCAGTCCTCAACGGAATGGAGTTGTAGAAAGGAAAATTTGCACTTTGCAAAAGATGGCAAGGGCAATGCTGCATGGGAAGAATTTGCTCTTACTTTTCTGGGCAGAAGCGCTTAATACAGCTTGTCACATGCATAATCGAATCTCTCTACGCCCTGGTACTACTCAGACGAATTATGGACTATGGAGAAGGAGGAAACCCAACATCAAATACTTCCACATCTTCGAAAGCATTTGTCAGATTCTTGCAGATAGAGAGTATAGAAAAAAATGGGATTCCAAGTCAGATGTTGGAATCTTTCTGGGATACTCTTCAAACAGTAGGGCCTACAGAGTATTTAATAACCGTACTCAATCTTCCATGGAATCAATCAATGTAGTTATAGATGATCACCACCGAAATTGTGCCAGATGGAGAGACAGTATGTTGATGTTCCCATATGATACACATGTTCTTGCTGATAAAGATAAGAACCTAGTGCCAGTTGATAAAGACAGTGAGAGTAGTAATTTAGACCCTAAAGAATCTGTATCTGACCAGATAAAGTGTTCTAGCAAAATTAAGAAAAATCATCCTTTGGAGAACATTATAGGTGACTTAAACTCTGGAGTCACAACTCGAAGGAAGGATAAAGGTTGGGGAAAAGCTATCATCTTTCTGGCGAATAAAACTTAG

Coding sequence (CDS)

ATGCCGACTGATTTTCCCTCATTTTCAAGCTCAAACCGACTCCATCTTTCAGCTGAGCTTCAAGAGGATATAGAAAAAGATATTTGGGGCAAATTTTTACAGAAGCGAAGACAGAAGCTGTGGGAGACGTGTTTCGCTGGAAAATGCAACGACATTGAAGGCGTAAGGGTGAGCAGCGAGAAGAGTCTCGCTGGTGTCCCTGGATACGGAGAAGGCAATGTGGGTAGCCAGGATATAGAAATGGTTCTCAATGCTGAAGGACTCAGAGAAGGCATGTGGCCTAAATCTCGTTTATGGAACCCGGTATTGAAGAACTTGAGAAGGTATATGGTTAACCTAGGATATGATATCTATGTGCACATAGAGGTAGCGAGCGAGTCCGAGGTGCTTAGCCTACACAGCAACTCGGCTGGGCTCACCATCAGTGTCTTGAATTTTGAGAATTGTAAATATTTGATCTTAAACCTATGTTGTACATATAGAGGATTAAGGGACAGAAGTGTTGGTCAAGGTATAAGGTTGACAGTGGATGCCGTAAGAGGGTCGGTGTCTGCTGTCCTCACATTTTCTCCTAGGTTAAGAGGGGAAAGCAACTTTTATCTCTTTGTTAGAACTCTAATCAGAAAGCTTGGTTCTGAACGTACTAAGAAAAAGGATTTTGTGTTACTCGACTGCACCTGGTTGGCTTTCTATACATTGAGATATTTAATGGAGCCTATCAGGGAAGGTGGATTAACAACTCATCCTCCCGTACTCGATGGTTCAAACTATTCGTATTGGAAGGCTAGGATGACAACATTCTTGAAATCCATTGACAACAAGACTTGGAAGGTCGTCATCTCTAGATGGAGTCTGCCTCAAGTCACCGACATAGAAGGAAAGGTTTGTCCTGAGCTTGAGAAAGATTGGACAGAGGATGAAGATGCATGGGATATTCTTGTTGTTGCACATGAAGGGACCTCCAAAGTAAAAATGTCTAGACTGCAACTCTTGACCATAAAATTTGAATCACTGAAGATGCTGGAAGAAGAGACTATAATAGAGTTTAATGATCGGCTCTTGGATGTTGGAAATGAATCATTTTCTCTTCGCGAGAAGATATCAAAAGAAGAGTTAGTGCGTAAGGTTCTTCGCTTGCTTCCAAAAAGATTTGATATGAAAGTCACAACTATTGAGGAGGCTCATGGCATTGCCACTATGAAATCAACCTATAAAAATGATGCTTATGTTGTCAAAATTAAGGAATCTGATGAGAACGTGGCTCAATCGATATCGCTTCTCACCAAACAGTTTGGAAAGGTGCTCAGAAGATGGGACAAACGTGGAGGATATCGGGATAACCATGTGCCTCCTAATCAAGATAGCAAGAGTCCCAATAGTCACTCGAACCTGAATAGTCAAGAATCGGGAGACAAAAAAATTAGATGTACAGAATGTGAAGGATATGGCCACTACCAAGCTGAATGGCCGAATTTCTTAAAAAGGAAGAACAAGAGTTATTCTGCCACATTATGTGATGCTGATGAGGATGTTGAATCTAGCAACGACTCTGATGAAGAAATTCGTGCTTTAATGGGTTGTTTGTCTCCTATAAGTTCCCAAGTGACTTTTCCTTCAGACATCGTGACGGACGTGGCTTTTGAGAGGACTCGAGAAGTTAAGTCTGATCATCACCAACTCCCATTAGAAGAGATAATCGAAAAATTAATGGAAGACAATCACCCTCTCTTGAGTACTATATTCGAATTGAAGAAGGAACTGAAATCCTCTAAAGTCGAGCTTGAAGCGATGACCAAGTCAATCCGCATGTTGAACTCCAGCACCGATGATATGAATAAGATTTTGTCTTGTGGAAAGCAAGATGTCATTCCCGTAAAAGGGTTAACTACAAACTTGATCAACATTAGTCAACTATGCGACCAAGGTCTCTCAGTGAGCTTCTCTAAGGATAAGTGTATTGTGACTGACACAGATAATACTATTGTCATGACAAGGACTCGCTCTTTTGACGACTCTATTGCGGAAGTAGTTGTCCTCGAAATTCTTCCGCTCTCAGAAAACTATGACAGTGTGTGCGATGACTGCCAAGTAGGAAAACAAGTTAGAGTCTCTCACAAGAGAGCTCTGGTCTGTACTACCAAACATGTTCTTGAACTACTTCACATTGACTTGATGGGTCTAATGCAAGTGGAAAGTTTGGAAGGAAAAAAATATGCTCTTGTCTGTGTCGATGATTTCGCACGATATACCCGGGTGAAGTTTATAAGAGAGAAATCAAATACCTTTCATGTTTGTCAAACTCTTTGTTGCCAACTTCAGAGAGAACAAAAGTTTGAAGATTTTTGTAATCTGGAAGGGATTATGCATGAATATTCATCTTCTATCAGTCCTCAACGGAATGGAGTTGTAGAAAGGAAAATTTGCACTTTGCAAAAGATGGCAAGGGCAATGCTGCATGGGAAGAATTTGCTCTTACTTTTCTGGGCAGAAGCGCTTAATACAGCTTGTCACATGCATAATCGAATCTCTCTACGCCCTGGTACTACTCAGACGAATTATGGACTATGGAGAAGGAGGAAACCCAACATCAAATACTTCCACATCTTCGAAAGCATTTGTCAGATTCTTGCAGATAGAGAGTATAGAAAAAAATGGGATTCCAAGTCAGATGTTGGAATCTTTCTGGGATACTCTTCAAACAGTAGGGCCTACAGAGTATTTAATAACCGTACTCAATCTTCCATGGAATCAATCAATGTAGTTATAGATGATCACCACCGAAATTGTGCCAGATGGAGAGACAGTATGTTGATGTTCCCATATGATACACATGTTCTTGCTGATAAAGATAAGAACCTAGTGCCAGTTGATAAAGACAGTGAGAGTAGTAATTTAGACCCTAAAGAATCTGTATCTGACCAGATAAAGTGTTCTAGCAAAATTAAGAAAAATCATCCTTTGGAGAACATTATAGGTGACTTAAACTCTGGAGTCACAACTCGAAGGAAGGATAAAGGTTGGGGAAAAGCTATCATCTTTCTGGCGAATAAAACTTAG

Protein sequence

MPTDFPSFSSSNRLHLSAELQEDIEKDIWGKFLQKRRQKLWETCFAGKCNDIEGVRVSSEKSLAGVPGYGEGNVGSQDIEMVLNAEGLREGMWPKSRLWNPVLKNLRRYMVNLGYDIYVHIEVASESEVLSLHSNSAGLTISVLNFENCKYLILNLCCTYRGLRDRSVGQGIRLTVDAVRGSVSAVLTFSPRLRGESNFYLFVRTLIRKLGSERTKKKDFVLLDCTWLAFYTLRYLMEPIREGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPELEKDWTEDEDAWDILVVAHEGTSKVKMSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMKSTYKNDAYVVKIKESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCTECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTFPSDIVTDVAFERTREVKSDHHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKVELEAMTKSIRMLNSSTDDMNKILSCGKQDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDSIAEVVVLEILPLSENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTRVKFIREKSNTFHVCQTLCCQLQREQKFEDFCNLEGIMHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNRTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKDKNLVPVDKDSESSNLDPKESVSDQIKCSSKIKKNHPLENIIGDLNSGVTTRRKDKGWGKAIIFLANKT

Homology

[Close]

BLAST of Clc02G09807 vs. NCBI nr
Match: AAO73527.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 537.0 bits (1382), Expect = 3.6e-148
Identity = 378/1058 (35.73%), Postives = 506/1058 (47.83%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDGSNY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DAW+IL + HEGTSKVKM
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKM 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+I+ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +        ++D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT 540
            E +  ++ LL KQF KVL R DKR      ++ P    K        + + S  K I+C 
Sbjct: 245  EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNI-PFDIRKGSKYQKRSDVKPSHSKGIQCH 304

Query: 541  ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTF 600
             CEGYGH  AE P  LK+  K  S  +C +D + E  +DSD ++ AL G           
Sbjct: 305  GCEGYGHIIAECPTHLKKHRKGLS--VCQSDTESEQESDSDRDVNALTGIFETAEDSSDT 364

Query: 601  PSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKV 660
             S+I  D   A  R   +KS+     +  L+++I  L  +       I ELK E+     
Sbjct: 365  DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEISELKGEVGFLNS 424

Query: 661  ELEAMTKSIRMLNSSTDDMNKILSCGK--------------------------------- 720
            +LE M KSI+MLN  +D ++++L  GK                                 
Sbjct: 425  KLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKFAGRTTMTEFVPAKNRTGTT 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  MSQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVP 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKII 604

Query: 841  -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRT 900
                           V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  +
Sbjct: 605  GMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGS 664

Query: 901  RSFDDS----------------------------------------IAEVVVLEILPLSE 960
            RS D+                                         I +  V  I  L  
Sbjct: 665  RSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKI 724

Query: 961  NYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDF 1005
                +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDDF
Sbjct: 725  EEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDF 784

[Close]

BLAST of Clc02G09807 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 534.3 bits (1375), Expect = 2.4e-147
Identity = 376/1056 (35.61%), Postives = 505/1056 (47.82%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDGSNY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DAW+IL + HEGTSKVK+
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKI 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+I+ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +         +D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLNTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT 540
            E +  ++ LL KQF KVL R DKR      ++ P    K        + + S  K I+C 
Sbjct: 245  EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNI-PFDIRKGSKYQKKSDVKPSHSKGIQCH 304

Query: 541  ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTF 600
             CEGYGH  AE P  LK+  K  S  +C +D + E  +DSD ++ AL G           
Sbjct: 305  GCEGYGHIIAECPTHLKKHRKGLS--VCQSDTESEQESDSDRDVNALTGIFETAEDSSDT 364

Query: 601  PSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKV 660
             S+I  D      R+  +KS+     +  L+++I  L  +       I ELK E+     
Sbjct: 365  DSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNS 424

Query: 661  ELEAMTKSIRMLNSSTDDMNKILSCGK--------------------------------- 720
            +LE MTKSI+MLN  +D ++++L  GK                                 
Sbjct: 425  KLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGAT 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  MSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHPHHGTQSSNSRKKMMWVPKH 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  KAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGM 604

Query: 841  -----------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRS 900
                         V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  +RS
Sbjct: 605  GKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRS 664

Query: 901  FDDS----------------------------------------IAEVVVLEILPLSENY 960
             D+                                         I +  V  I  L    
Sbjct: 665  KDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEE 724

Query: 961  DSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFAR 1005
              +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDDF+R
Sbjct: 725  GRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSR 784

[Close]

BLAST of Clc02G09807 vs. NCBI nr
Match: AAO73523.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 530.0 bits (1364), Expect = 4.4e-146
Identity = 376/1058 (35.54%), Postives = 505/1058 (47.73%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDGSNY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DA +IL   HEGTSKVKM
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKM 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+I+ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +        ++D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT 540
            E +  ++ LL KQF KVL R DKR      ++ P    K        + + S  K I+C 
Sbjct: 245  EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNI-PFDIRKGSKYQKRSDVKPSHSKGIQCH 304

Query: 541  ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTF 600
             CEGYGH  AE P  LK+  K  S  +C +D + E  +DSD ++ AL+G           
Sbjct: 305  GCEGYGHIIAECPTHLKKHRKGLS--VCQSDTESEQESDSDRDVNALIGIFETAEDSSDT 364

Query: 601  PSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKV 660
             S+I  D   A  R   +KS+     +  L+++I  L  +       I ELK E+     
Sbjct: 365  DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNS 424

Query: 661  ELEAMTKSIRMLNSSTDDMNKILSCGK--------------------------------- 720
            +LE MTKSI+MLN  +D ++++L  GK                                 
Sbjct: 425  KLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGAT 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  MSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVP 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKII 604

Query: 841  -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRT 900
                           V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  +
Sbjct: 605  GMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGS 664

Query: 901  RSFDDS----------------------------------------IAEVVVLEILPLSE 960
            RS D+                                         + +  V  I  L  
Sbjct: 665  RSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKI 724

Query: 961  NYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDF 1005
                +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDDF
Sbjct: 725  EEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDF 784

[Close]

BLAST of Clc02G09807 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 526.2 bits (1354), Expect = 6.4e-145
Identity = 373/1057 (35.29%), Postives = 509/1057 (48.16%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDG+NY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DAW+IL   HEGTSKVKM
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKM 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+++ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +        ++D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQE-SGDKKIRC 540
            E +  ++  L KQF KVL R D+R      ++  + D +  + +   + ++ S  K I+C
Sbjct: 245  EGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNI--SLDIRKGSEYQRKSDEKPSHSKGIQC 304

Query: 541  TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVT 600
              CEGYGH +AE P  LK++ K  S    D D + E  +DSD ++ AL G          
Sbjct: 305  RGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFESAEDSSD 364

Query: 601  FPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSK 660
              S+I  D    F R   +KS+     +  L+++I  L  +       I +LK E+    
Sbjct: 365  TDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLN 424

Query: 661  VELEAMTKSIRMLNSSTDDMNKILSCGKQ------------------------------- 720
             +LE MTKSI+MLN  +D ++++L  GK+                               
Sbjct: 425  SKLENMTKSIKMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGA 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  TMSQHRSRHHGTQQKRSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQGSSSGRKMMWV 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  PKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKI 604

Query: 841  ---------------DVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTR 900
                            V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  
Sbjct: 605  TGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKG 664

Query: 901  TRSFDDS----------------------------------------IAEVVVLEILPLS 960
            +RS D+                                         I +  V  I  L 
Sbjct: 665  SRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 724

Query: 961  ENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDD 1005
                 +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDD
Sbjct: 725  IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDD 784

[Close]

BLAST of Clc02G09807 vs. NCBI nr
Match: AAO73525.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 515.8 bits (1327), Expect = 8.7e-142
Identity = 372/1057 (35.19%), Postives = 502/1057 (47.49%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDG+NY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELK 64

Query: 301  -EKDWTEDED----------------------------------AWDILVVAHEGTSKVK 360
             E+DWT++ED                                    +IL   HEGTSKVK
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVK 124

Query: 361  MSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRF 420
            MSRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+++ E+LVRK+LR LPKRF
Sbjct: 125  MSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRF 184

Query: 421  DMKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ES 480
            DMKVT IEEA  I  M+                       KN A+V   +        ++
Sbjct: 185  DMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSNDEGEEDEYDLDT 244

Query: 481  DENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRC 540
            DE +  ++ LL KQF KVL R D+R      ++ P    K    H   + + S  K I+C
Sbjct: 245  DEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNI-PFDIRKGSEYHKKSDEKPSHSKGIQC 304

Query: 541  TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVT 600
              CEGYGH +AE P  LK++ K  S    D D + E  +DSD ++ AL G     S + +
Sbjct: 305  HGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFE--SDEDS 364

Query: 601  FPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSK 660
               +I  D      R+  +KS+     +  L+++I  L  +       I ELK E+    
Sbjct: 365  SDIEITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLN 424

Query: 661  VELEAMTKSIRMLNSSTDDMNKILSCGK-------------------------------- 720
             +LE MTKSI+MLN  +D ++++L  GK                                
Sbjct: 425  SKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSACRITMTEFVPAKNSTGA 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  TMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWV 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  PKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKI 604

Query: 841  --------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTR 900
                            V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  
Sbjct: 605  TGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKG 664

Query: 901  TRSFDDS----------------------------------------IAEVVVLEILPLS 960
            +RS D+                                         I +  V  I  L 
Sbjct: 665  SRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 724

Query: 961  ENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDD 1005
                 +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDD
Sbjct: 725  IEEGRICGECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDD 784

[Close]

BLAST of Clc02G09807 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 4.9e-23
Identity = 162/669 (24.22%), Postives = 278/669 (41.55%), Query Frame = 0


Query: 349 FNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFDMKVTTIEEAHGIATMKSTYKNDA 408
           FN  +  + N    L  KI +E+    +L  LP  +D   TTI   HG  T++      A
Sbjct: 125 FNGLITQLAN----LGVKIEEEDKAILLLNSLPSSYDNLATTI--LHGKTTIELKDVTSA 184

Query: 409 YVV--KIKESDENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNS 468
            ++  K+++  EN  Q  +L+T+  G+  +R        +N+       KS N       
Sbjct: 185 LLLNEKMRKKPENQGQ--ALITEGRGRSYQR------SSNNYGRSGARGKSKN------- 244

Query: 469 QESGDKKIRCTECEGYGHYQAEWPNFLK-------RKNKSYSATLCDADEDVESSNDSDE 528
             S  +   C  C   GH++ + PN  K       +KN   +A +   +++V    + +E
Sbjct: 245 -RSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEE 304

Query: 529 EIRALMGCLSPISSQV--TFPSDIVTDVAFERTREVKSDHHQLPL-EEIIEKLMEDNHPL 588
           E   L G   P S  V  T  S   T V     R V  D   + +      K+       
Sbjct: 305 ECMHLSG---PESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDIC 364

Query: 589 LSTIFELKKELKSSKVELEAMTKSIRMLNSSTDD-----MNKILSCGKQDVIPVKGLTTN 648
           + T       LK  +   +     I  +    D       N+     K  ++  KG+   
Sbjct: 365 IKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARG 424

Query: 649 LI--NISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRSFDDSIAEVVVLEILPLSENYD 708
            +    +++C   L+   ++D+  V      +   R     +   +++  + L       
Sbjct: 425 TLYRTNAEICQGELNA--AQDEISV-----DLWHKRMGHMSEKGLQILAKKSLISYAKGT 484

Query: 709 SV--CDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFA 768
           +V  CD C  GKQ RVS + +      ++L+L++ D+ G M++ES+ G KY +  +DD +
Sbjct: 485 TVKPCDYCLFGKQHRVSFQTSSE-RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDAS 544

Query: 769 RYTRVKFIREKSNTFHVCQTLCCQLQRE------------------QKFEDFCNLEGIMH 828
           R   V  ++ K   F V Q     ++RE                  ++FE++C+  GI H
Sbjct: 545 RKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRH 604

Query: 829 EYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTT 888
           E +   +PQ NGV ER   T+ +  R+ML    L   FW EA+ TAC++ NR    P   
Sbjct: 605 EKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAF 664

Query: 889 QTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNN 948
           +    +W  ++ +  +  +F         +E R K D KS   IF+GY      YR+++ 
Sbjct: 665 EIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDP 724

Query: 949 RTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKDKN-LVP--VDKDSESSNLD 976
             +  + S +VV          +R+S +    D   +++K KN ++P  V   S S+N  
Sbjct: 725 VKKKVIRSRDVV----------FRESEVRTAAD---MSEKVKNGIIPNFVTIPSTSNNPT 747

[Close]

BLAST of Clc02G09807 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-21
Identity = 81/316 (25.63%), Postives = 149/316 (47.15%), Query Frame = 0


Query: 691 VCDDCQVGKQVRVSHKRALVCT-TKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARY 750
           +C+ C  GKQ R+  K+    T  K  L ++H D+ G +   +L+ K Y ++ VD F  Y
Sbjct: 454 ICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHY 513

Query: 751 TRVKFIREKSNTFHVCQTLCCQLQR------------------EQKFEDFCNLEGIMHEY 810
                I+ KS+ F + Q    + +                     +   FC  +GI +  
Sbjct: 514 CVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHL 573

Query: 811 SSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRP--GTT 870
           +   +PQ NGV ER I T+ + AR M+ G  L   FW EA+ TA ++ NRI  R    ++
Sbjct: 574 TVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSS 633

Query: 871 QTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNN 930
           +T Y +W  +KP +K+  +F +   +   +  + K+D KS   IF+GY  N   +++++ 
Sbjct: 634 KTPYEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGYEPN--GFKLWDA 693

Query: 931 RTQSSMESINVVIDDHHRNCARWRDSMLMFPYDTHVLADKD-----KNLVPVDKDSESSN 981
             +  + + +VV+D+ +   +R      +F  D+    +K+     + ++  +  +ES  
Sbjct: 694 VNEKFIVARDVVVDETNMVNSRAVKFETVFLKDSKESENKNFPNDSRKIIQTEFPNESKE 753

[Close]

BLAST of Clc02G09807 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-11
Identity = 61/254 (24.02%), Postives = 111/254 (43.70%), Query Frame = 0


Query: 692 CDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFARYTR 751
           C DC + K  +V    + + ++K  LE ++ D+     + S++  +Y ++ VD F RYT 
Sbjct: 479 CSDCFINKSHKVPFSNSTITSSK-PLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTW 538

Query: 752 VKFIREKS---NTFHVCQTLCCQLQREQKFE------------------DFCNLEGIMHE 811
           +  +++KS   +TF + ++L      E +F+                  D+ +  GI H 
Sbjct: 539 LYPLKQKSQVKDTFIIFKSLV-----ENRFQTRIGTLYSDNGGEFVVLRDYLSQHGISHF 598

Query: 812 YSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPGTTQ 871
            S   +P+ NG+ ERK   + +M   +L   ++   +W  A + A ++ NR+       Q
Sbjct: 599 TSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQ 658

Query: 872 TNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVFNNR 925
           + +     + PN +   +F   C        R K + KS    F+GYS    AY   +  
Sbjct: 659 SPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIP 718

[Close]

BLAST of Clc02G09807 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-08
Identity = 81/378 (21.43%), Postives = 147/378 (38.89%), Query Frame = 0


Query: 607 STDDMNKILSCGKQDVIPVKGLTTNLINISQLCD-QGLSVSFSKDKCIVTDTDNTIVMTR 666
           ST    K       +++ V  +  NLI++ +LC+  G+SV F      V D +  + + +
Sbjct: 375 STSLSTKSRPLNLHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQ 434

Query: 667 TRSFDD------------------------------------SIAEVVV----LEILPLS 726
            ++ D+                                    SI   V+    L +L  S
Sbjct: 435 GKTKDELYEWPIASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPS 494

Query: 727 ENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDD 786
             + S C DC + K  +V   ++ + +T+  LE ++ D+     + S +  +Y ++ VD 
Sbjct: 495 HKFLS-CSDCLINKSNKVPFSQSTINSTR-PLEYIYSDVWS-SPILSHDNYRYYVIFVDH 554

Query: 787 FARYTRVKFIREKSNTFHVCQTLCCQLQREQKFE------------------DFCNLEGI 846
           F RYT +  +++KS       T    L  E +F+                  ++ +  GI
Sbjct: 555 FTRYTWLYPLKQKSQVKETFITFKNLL--ENRFQTRIGTFYSDNGGEFVALWEYFSQHGI 614

Query: 847 MHEYSSSISPQRNGVVERKICTLQKMARAMLHGKNLLLLFWAEALNTACHMHNRISLRPG 906
            H  S   +P+ NG+ ERK   + +    +L   ++   +W  A   A ++ NR+     
Sbjct: 615 SHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLL 674

Query: 907 TTQTNYGLWRRRKPNIKYFHIFESICQILADREYRKKWDSKSDVGIFLGYSSNSRAYRVF 926
             ++ +       PN     +F   C        + K D KS   +FLGYS    AY   
Sbjct: 675 QLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCL 734

[Close]

BLAST of Clc02G09807 vs. ExPASy TrEMBL
Match: Q84VH8 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 1.8e-148
Identity = 378/1058 (35.73%), Postives = 506/1058 (47.83%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDGSNY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DAW+IL + HEGTSKVKM
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKM 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+I+ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +        ++D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT 540
            E +  ++ LL KQF KVL R DKR      ++ P    K        + + S  K I+C 
Sbjct: 245  EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNI-PFDIRKGSKYQKRSDVKPSHSKGIQCH 304

Query: 541  ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTF 600
             CEGYGH  AE P  LK+  K  S  +C +D + E  +DSD ++ AL G           
Sbjct: 305  GCEGYGHIIAECPTHLKKHRKGLS--VCQSDTESEQESDSDRDVNALTGIFETAEDSSDT 364

Query: 601  PSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKV 660
             S+I  D   A  R   +KS+     +  L+++I  L  +       I ELK E+     
Sbjct: 365  DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHEEEISELKGEVGFLNS 424

Query: 661  ELEAMTKSIRMLNSSTDDMNKILSCGK--------------------------------- 720
            +LE M KSI+MLN  +D ++++L  GK                                 
Sbjct: 425  KLETMKKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKFAGRTTMTEFVPAKNRTGTT 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  MSQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVP 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKII 604

Query: 841  -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRT 900
                           V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  +
Sbjct: 605  GMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGS 664

Query: 901  RSFDDS----------------------------------------IAEVVVLEILPLSE 960
            RS D+                                         I +  V  I  L  
Sbjct: 665  RSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKI 724

Query: 961  NYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDF 1005
                +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDDF
Sbjct: 725  EEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDF 784

[Close]

BLAST of Clc02G09807 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 1.1e-147
Identity = 376/1056 (35.61%), Postives = 505/1056 (47.82%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDGSNY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DAW+IL + HEGTSKVK+
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKI 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+I+ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +         +D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLNTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT 540
            E +  ++ LL KQF KVL R DKR      ++ P    K        + + S  K I+C 
Sbjct: 245  EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNI-PFDIRKGSKYQKKSDVKPSHSKGIQCH 304

Query: 541  ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTF 600
             CEGYGH  AE P  LK+  K  S  +C +D + E  +DSD ++ AL G           
Sbjct: 305  GCEGYGHIIAECPTHLKKHRKGLS--VCQSDTESEQESDSDRDVNALTGIFETAEDSSDT 364

Query: 601  PSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKV 660
             S+I  D      R+  +KS+     +  L+++I  L  +       I ELK E+     
Sbjct: 365  DSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNS 424

Query: 661  ELEAMTKSIRMLNSSTDDMNKILSCGK--------------------------------- 720
            +LE MTKSI+MLN  +D ++++L  GK                                 
Sbjct: 425  KLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGAT 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  MSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHPHHGTQSSNSRKKMMWVPKH 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  KAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGM 604

Query: 841  -----------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRTRS 900
                         V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  +RS
Sbjct: 605  GKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRS 664

Query: 901  FDDS----------------------------------------IAEVVVLEILPLSENY 960
             D+                                         I +  V  I  L    
Sbjct: 665  KDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEE 724

Query: 961  DSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDFAR 1005
              +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDDF+R
Sbjct: 725  GRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSR 784

[Close]

BLAST of Clc02G09807 vs. ExPASy TrEMBL
Match: Q84VI2 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 530.0 bits (1364), Expect = 2.1e-146
Identity = 376/1058 (35.54%), Postives = 505/1058 (47.73%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDGSNY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DA +IL   HEGTSKVKM
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKM 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+I+ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +        ++D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEKKSKNLAFVSNDEGEEDEYDLDTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRCT 540
            E +  ++ LL KQF KVL R DKR      ++ P    K        + + S  K I+C 
Sbjct: 245  EGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNI-PFDIRKGSKYQKRSDVKPSHSKGIQCH 304

Query: 541  ECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVTF 600
             CEGYGH  AE P  LK+  K  S  +C +D + E  +DSD ++ AL+G           
Sbjct: 305  GCEGYGHIIAECPTHLKKHRKGLS--VCQSDTESEQESDSDRDVNALIGIFETAEDSSDT 364

Query: 601  PSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSKV 660
             S+I  D   A  R   +KS+     +  L+++I  L  +       I ELK E+     
Sbjct: 365  DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEEISELKGEVGFLNS 424

Query: 661  ELEAMTKSIRMLNSSTDDMNKILSCGK--------------------------------- 720
            +LE MTKSI+MLN  +D ++++L  GK                                 
Sbjct: 425  KLENMTKSIKMLNKGSDTLDEVLLLGKNAGNQRGLGFNPKSAGRTTMTEFVPAKNRTGAT 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  MSQHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVP 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  KHKAVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKII 604

Query: 841  -------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTRT 900
                           V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  +
Sbjct: 605  GMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGS 664

Query: 901  RSFDDS----------------------------------------IAEVVVLEILPLSE 960
            RS D+                                         + +  V  I  L  
Sbjct: 665  RSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKI 724

Query: 961  NYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDDF 1005
                +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDDF
Sbjct: 725  EEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDF 784

[Close]

BLAST of Clc02G09807 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 3.1e-145
Identity = 373/1057 (35.29%), Postives = 509/1057 (48.16%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDG+NY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELK 64

Query: 301  -EKDWTEDE---------------------------------DAWDILVVAHEGTSKVKM 360
             E+DWT++E                                 DAW+IL   HEGTSKVKM
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKM 124

Query: 361  SRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRFD 420
            SRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+++ E+LVRK+LR LPKRFD
Sbjct: 125  SRLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFD 184

Query: 421  MKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ESD 480
            MKVT IEEA  I  M+                       KN A+V   +        ++D
Sbjct: 185  MKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRTEKKSKNLAFVSNDEGEEDEYDLDTD 244

Query: 481  ENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQE-SGDKKIRC 540
            E +  ++  L KQF KVL R D+R      ++  + D +  + +   + ++ S  K I+C
Sbjct: 245  EGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNI--SLDIRKGSEYQRKSDEKPSHSKGIQC 304

Query: 541  TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVT 600
              CEGYGH +AE P  LK++ K  S    D D + E  +DSD ++ AL G          
Sbjct: 305  RGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFESAEDSSD 364

Query: 601  FPSDIVTD--VAFERTREVKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSK 660
              S+I  D    F R   +KS+     +  L+++I  L  +       I +LK E+    
Sbjct: 365  TDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISKLKGEVGFLN 424

Query: 661  VELEAMTKSIRMLNSSTDDMNKILSCGKQ------------------------------- 720
             +LE MTKSI+MLN  +D ++++L  GK+                               
Sbjct: 425  SKLENMTKSIKMLNKGSDMLDZVLQLGKKVGNQRGLGFNHKSAGRTTMTEFVPAKNSTGA 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  TMSQHRSRHHGTQQKRSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQGSSSGRKMMWV 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  PKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKI 604

Query: 841  ---------------DVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTR 900
                            V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  
Sbjct: 605  TGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKG 664

Query: 901  TRSFDDS----------------------------------------IAEVVVLEILPLS 960
            +RS D+                                         I +  V  I  L 
Sbjct: 665  SRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 724

Query: 961  ENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDD 1005
                 +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDD
Sbjct: 725  IEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDD 784

[Close]

BLAST of Clc02G09807 vs. ExPASy TrEMBL
Match: Q84VI0 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 515.8 bits (1327), Expect = 4.2e-142
Identity = 372/1057 (35.19%), Postives = 502/1057 (47.49%), Query Frame = 0


Query: 241  REGGLTTHPPVLDGSNYSYWKARMTTFLKSIDNKTWKVVISRWSLPQVTDIEGKVCPEL- 300
            +EGG    PP+LDG+NY YWKARM  FLKS+D++TWK VI  W  P++ D EGK   EL 
Sbjct: 5    KEGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELK 64

Query: 301  -EKDWTEDED----------------------------------AWDILVVAHEGTSKVK 360
             E+DWT++ED                                    +IL   HEGTSKVK
Sbjct: 65   PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVK 124

Query: 361  MSRLQLLTIKFESLKMLEEETIIEFNDRLLDVGNESFSLREKISKEELVRKVLRLLPKRF 420
            MSRLQLL  KFE+LKM EEE I +F+  +L++ N   +L E+++ E+LVRK+LR LPKRF
Sbjct: 125  MSRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRF 184

Query: 421  DMKVTTIEEAHGIATMK--------------------STYKNDAYVVKIK--------ES 480
            DMKVT IEEA  I  M+                       KN A+V   +        ++
Sbjct: 185  DMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEKKSKNLAFVSNDEGEEDEYDLDT 244

Query: 481  DENVAQSISLLTKQFGKVLRRWDKRGGYRDNHVPPNQDSKSPNSHSNLNSQESGDKKIRC 540
            DE +  ++ LL KQF KVL R D+R      ++ P    K    H   + + S  K I+C
Sbjct: 245  DEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNI-PFDIRKGSEYHKKSDEKPSHSKGIQC 304

Query: 541  TECEGYGHYQAEWPNFLKRKNKSYSATLCDADEDVESSNDSDEEIRALMGCLSPISSQVT 600
              CEGYGH +AE P  LK++ K  S    D D + E  +DSD ++ AL G     S + +
Sbjct: 305  HGCEGYGHIKAECPTHLKKQRKGLSVCRSD-DTESEQESDSDRDVNALTGRFE--SDEDS 364

Query: 601  FPSDIVTDVAFERTRE--VKSD---HHQLPLEEIIEKLMEDNHPLLSTIFELKKELKSSK 660
               +I  D      R+  +KS+     +  L+++I  L  +       I ELK E+    
Sbjct: 365  SDIEITFDELAISYRKLCIKSEKILQQEAQLKKVIANLEAEKEAHEEEISELKGEVGFLN 424

Query: 661  VELEAMTKSIRMLNSSTDDMNKILSCGK-------------------------------- 720
             +LE MTKSI+MLN  +D ++++L  GK                                
Sbjct: 425  SKLENMTKSIKMLNKGSDMLDEVLQLGKNVGNQRGLGFNHKSACRITMTEFVPAKNSTGA 484

Query: 721  ------------------------------------------------------------ 780
                                                                        
Sbjct: 485  TMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSSSGRKMMWV 544

Query: 781  ------------------------------------------------------------ 840
                                                                        
Sbjct: 545  PKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKI 604

Query: 841  --------------QDVIPVKGLTTNLINISQLCDQGLSVSFSKDKCIVTDTDNTIVMTR 900
                            V+ VKGLT NLI+ISQLCD+G +V+F+K +C+VT+  + ++M  
Sbjct: 605  TGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKG 664

Query: 901  TRSFDDS----------------------------------------IAEVVVLEILPLS 960
            +RS D+                                         I +  V  I  L 
Sbjct: 665  SRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLK 724

Query: 961  ENYDSVCDDCQVGKQVRVSHKRALVCTTKHVLELLHIDLMGLMQVESLEGKKYALVCVDD 1005
                 +C +CQ+GKQV++SH++    TT  VLELLH+DLMG MQVESL GK+YA V VDD
Sbjct: 725  IEEGRICGECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDD 784

The following BLAST results are available for this feature:

BLAST of Clc02G09807 vs. NCBI nr


Match Name	E-value	Identity	Description
AAO73527.1	3.6e-148	35.73	gag-pol polyprotein [Glycine max]	[more]
AAO73521.1	2.4e-147	35.61	gag-pol polyprotein [Glycine max]	[more]
AAO73523.1	4.4e-146	35.54	gag-pol polyprotein [Glycine max]	[more]
AAO73529.1	6.4e-145	35.29	gag-pol polyprotein [Glycine max]	[more]
AAO73525.1	8.7e-142	35.19	gag-pol polyprotein [Glycine max]	[more]

BLAST of Clc02G09807 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.9e-23	24.22	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.7e-21	25.63	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.7e-11	24.02	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.5e-08	21.43	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc02G09807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q84VH8	1.8e-148	35.73	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI4	1.1e-147	35.61	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI2	2.1e-146	35.54	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VH6	3.1e-145	35.29	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI0	4.2e-142	35.19	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Clc02G09807 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 305..394 e-value: 6.1E-9 score: 35.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 442..471
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 450..470
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 242..418
None	No IPR available	PANTHER	PTHR34676:SF8	MYOSIN-11-LIKE	coord: 242..418
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 710..876 e-value: 7.6E-25 score: 89.4
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 771..860 score: 9.146481
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 713..845

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09807.1	Clc02G09807.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding