Clc02G09800 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09800
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1
Location	ClcChr02: 14333776 .. 14336528 (-)
RNA-Seq Expression	Clc02G09800
Synteny	Clc02G09800

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTCACCTGGTGGTCTCCTTGACCTCCCCAACGAAAGTTGGGATGGTCTCGCCATCCAGGGTTGTAAGTATTACGTTATGGATCATATTTTCGTCCTCCTTGATAGCCACCATAGCTCACCTCCTTCACGGGGATTGAGGGTTGAACTTGAGCACGGGCCATTGTTTTACCAAAGCAGTTAAGTCAATTAATTGAGAACGTTACTCTTTTACCTCTTGTGAGTCGGTTGGGGTGACTCGCACGTTTTTATTTCTGTGTTTTTGCCAAACTTTTTTGGGGATATTTGTACAGATGGCCCATTTGAGAGGCCCACTCGAAATTTGGTCTTTTGCTGATATCATTACTATGCGAAATTACCACTTTAACCCTTCTTCTTACTCTTCTTCCACCATTTCGTTCCCATTGTTTTTTTCTTCTTTTGTTCTTCATTTTTTCTGCTTTTCATCTTTCTTATTAGCGTCGTTTTTTTCTTCTCATTCTGATTATGAAAATCTCGCTGGGAAAATGAAAAAAAAAAATAGAGTGACATCTCCGGAAATCGTCTCGCTGGGAAGATGCATGAAAAAAGACGAAGAAGATGCCTGAAGAAGGACGACGAAGAAAAGCAGAAAAAACGATGAACGAAAAAAAAAAAAACAGCGAGAGCGAAATGACGGAAGAAGAGAAGGAAGAATGGTTAAAGTGGTAATTTCGCATAGTGATGACATCAGCCGAAGGCCAAATTTTGAGTGCTTTTGAATTTGAGGCCAAATTTTGAGTGAGCCTCTCAAAATAAGTCATTGGTACAAATATCTCATTTTTTTGCCATATTTAAAAATAATTGGCACTTTTTGCCATTTATAACAATTTCTCAAAAAGAAAATAAGTAAACAAAATCAAATTAAACTGATTTATGCATTATTTACTAAAAGAAAGGCCCGAGTTTTCGAATCATTTCGAAAGTGCCCCTTTTGAAGAGATATTGCGAAATCGTGCCAGCGTTGTAGAAACCCCTCAGACCCAAAGTAGGGTTTTAGCTTTAACCCTCAGCAGCCAAGAAGCAAGAGTCCGTTCTTGTTCATATTCCGTACCAAGAACCACCTTTAGAATCTATCATTTCTTCTCATAAACAATGGCTTCCATCGGTGCCAGGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGCGTTTCTTAATGCTTTTGCATCCATATTAAGTGCGAAAAGTTTCTGAATCTAGAGCTCTTTGAGTTTTTTTCCCCTCCCCAAAAGGAAATCAACGGTGTTCAATTTTAAACTTTATTTCTCTCCCCAGTGTTTTAGTTGCGAAAGTGCGCTCTAGAATTTTGAAATGACAACAAGATAGCCTTTCCCTTTCCTCTGCTTTAAAATACAAAGTTTGGCGAAACGTTTCAGCAAATAAGGTAATGTATTTTGCTTGAAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGTGCATAACTGATAATTTAATTCATAACTTTCTTGATCTGTCATGAGCTAGATTGAAAGAGGGAAGAACAATTTTACGTATTTGTATAGTTCGGAATTTAGACCATATCTATAATTTCAGAATGACTTCGTACGTGCACAAGAAAGAGAGTTGATAATTTTCTGGAAGTCGATCTTCTATTCGCATTGGTTCTTCGTTGGATGAATTTCAGCTTTATAATTATTTTCATGAATCAAGAAAGAGAGTTGTAGTTCGAGTGCGGATAGTGATCCATTGTATGTAGAAATAGTGATATCTTTATTTCGATTTAGCCACAGTAATCGGATGTTTCTGGAGGATGAAATATCTATGCTAGTATGCCATTAAAGTAGTTAATGTCTATGAATCATCAGAAGCTGCACCATGAAAAGCTTTCTTTTGGGTTAATTTAAGTACTGATATGGATTAATATGCCAGTAACTTATAACTGTTCATAAGTCTTTCCTGTGTGCATGAATCTTGTGTTGTGATATCACTTCTTGAGTTTTTTTCCTTACTTTCTGGTTTCTTCACTTGATATAAAACTTGTAACATAGACATACCTGATCCAACTCCGTAATTTCCTTGATTTTTTGTTTTGAAAGGAGAAGTGGATCTGCTTCTAGGCTGTCTAACTAGTGGATTTTTTACTCTTGAATTAGGTAGCTAGCACACTTAATAGGCCCATTGATGTTCTTCTTGCCTTCTTGTTGCTCTGGTGAGTTGGTGCCTATAAACTCATATAGGACTGATAAAATTGAACAGAATTGTATAATAGCATGCATGCACAACAACTCGATCATTTTTCCCCTAGTAGCCAGTTTATTGCTTCAAGTAGATACTCTTCAAATTAGGATGCAAACAAGCTTATCAGATAATAACGATTCATTCTCTTTCCTCCACGTCCCATGACTGTTCATTGATAAGAGTTTAAGTCCTTTTACTGAACTCGGGTGTTACAAATCTTATTCTTTCATATGCTTACTAGAATGAGCCATTTATGCGAAAACCTTCCATTTCTGATTCAAATTGTTATTTAAAAAAGTACATTCCCCTGTTTTCAATGTAGGCAAAGACAAGACTAGATGA

mRNA sequence

ATGTACTCACCTGGTGGTCTCCTTGACCTCCCCAACGAAAGTTGGGATGGTCTCGCCATCCAGGGTTGTAAGTATTACGTTATGGATCATATTTTCGTCCTCCTTGATAGCCACCATAGCTCACCTCCTTCACGGGGATTGAGGGTTGAACTTGAGCACGGGCCATTGTTTTACCAAAGCACAGCCAAGAAGCAAGAGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGCAAAGACAAGACTAGATGA

Coding sequence (CDS)

ATGTACTCACCTGGTGGTCTCCTTGACCTCCCCAACGAAAGTTGGGATGGTCTCGCCATCCAGGGTTGTAAGTATTACGTTATGGATCATATTTTCGTCCTCCTTGATAGCCACCATAGCTCACCTCCTTCACGGGGATTGAGGGTTGAACTTGAGCACGGGCCATTGTTTTACCAAAGCACAGCCAAGAAGCAAGAGTCTGTTTTCCGGTCATTCTCCGGTTCGGCACGCCGTGCTGCTGCTCACATCGGCTCTCAAGCTAAGCCGTCATCAAGCTCTCCCTTTCGCATGGCAACTAGCAAGCCCCTCTCTCATCGAACTTTCAGGTGTGCGCCTGAGATGAGCTTCTGTCTGGAGTCGATGATGCCATTTCACTCTGCGTCGTCGTCAGCTTTGATGACTTCAATGCTCTCTATCACCCGCCACAGTTGCGGTTGGCTTCCCGAAGGCAAAGACAAGACTAGATGA

Protein sequence

MYSPGGLLDLPNESWDGLAIQGCKYYVMDHIFVLLDSHHSSPPSRGLRVELEHGPLFYQSTAKKQESVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHSASSSALMTSMLSITRHSCGWLPEGKDKTR

Homology

[Close]

BLAST of Clc02G09800 vs. NCBI nr
Match: XP_011649972.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-37
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAAAHIGSQ KPS SSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAAAHIGSQPKPSPSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
            SSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  VSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. NCBI nr
Match: XP_011649974.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 7.5e-37
Identity = 83/89 (93.26%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAAAHIGSQ K SSSSPFRMAT+KPLSHRTFRCAPEMSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAAAHIGSQPKASSSSPFRMATNKPLSHRTFRCAPEMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
            SSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  VSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. NCBI nr
Match: XP_038901103.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 7.5e-37
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAA HIGSQA+PSS+SPFRMAT+KPLSHRTFRCAP MSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAATHIGSQARPSSTSPFRMATNKPLSHRTFRCAPVMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           ASSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  ASSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. NCBI nr
Match: XP_016901879.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 8.2e-36
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAAAHIGSQ KPSS+SPFRMAT+KPLSH TFRCAP MSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
            SSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  VSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. NCBI nr
Match: XP_016901844.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 159.1 bits (401), Expect = 3.1e-35
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAAAHIGSQ KPSS+SPFRMAT+KP SH TFRCAP MSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPFSHCTFRCAPVMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
            SSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  VSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-07
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 0


Query: 73  SGSARRAAAHIGSQAKPSSSSP--FRMATSKPLSHRTFRCAPEMSFCLESMMPFHSASSS 132
           + S+R AAA  G  A  + S+P  FR    +       R   E+SFC+ES++P+HSA++S
Sbjct: 16  AASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLLPYHSATAS 75

Query: 133 ALMTSMLSITRHSCGWLPE 150
           ALMTS LSI+  + GWL +
Sbjct: 76  ALMTSKLSISGQTYGWLSD 94

[Close]

BLAST of Clc02G09800 vs. ExPASy TrEMBL
Match: A0A1S4E0Y3 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496017 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 4.0e-36
Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAAAHIGSQ KPSS+SPFRMAT+KPLSH TFRCAP MSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPLSHPTFRCAPVMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
            SSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  VSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. ExPASy TrEMBL
Match: A0A1S4E0U8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC107991430 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 80/89 (89.89%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           S FRSFSGSARRAAAHIGSQ KPSS+SPFRMAT+KP SH TFRCAP MSFCLESMMPFHS
Sbjct: 8   SAFRSFSGSARRAAAHIGSQPKPSSTSPFRMATNKPFSHCTFRCAPVMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
            SSSALMTSMLSI+RHSCGWLPEGKDKTR
Sbjct: 68  VSSSALMTSMLSISRHSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. ExPASy TrEMBL
Match: A0A6J1J7G1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484153 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 4.4e-35
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           SVFRSFSGSARRAAA IGSQAK SSS+PFRMAT+KPLSHRTFRCA EMSFCLESMMPFHS
Sbjct: 8   SVFRSFSGSARRAAAQIGSQAKLSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           ASSSALMTSMLS++R SCGWLPEGKDKTR
Sbjct: 68  ASSSALMTSMLSVSRSSCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. ExPASy TrEMBL
Match: A0A6J1FS03 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448284 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.8e-35
Identity = 80/89 (89.89%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           SVFRSFSGSARRAAA IGSQAK SSS+PFRMAT+KPLSHRTFRCA EMSFCLESMMPFHS
Sbjct: 8   SVFRSFSGSARRAAAQIGSQAKSSSSTPFRMATTKPLSHRTFRCAAEMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           ASSSALMTSMLS++R  CGWLPEGKDKTR
Sbjct: 68  ASSSALMTSMLSVSRSCCGWLPEGKDKTR 96

[Close]

BLAST of Clc02G09800 vs. ExPASy TrEMBL
Match: A0A6J1CGX5 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011321 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.3e-34
Identity = 81/89 (91.01%), Postives = 87/89 (97.75%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSSPFRMATSKPLSHRTFRCAPEMSFCLESMMPFHS 126
           SVFRSFSGSARRAAAHIGS+A+ +SSSPFRMAT+KPLSHRTFRCA EMSFCLESMMPFHS
Sbjct: 8   SVFRSFSGSARRAAAHIGSEAR-ASSSPFRMATNKPLSHRTFRCAAEMSFCLESMMPFHS 67

Query: 127 ASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           ASSSALMTSMLSI+R+SCGWLPEGKDKTR
Sbjct: 68  ASSSALMTSMLSISRNSCGWLPEGKDKTR 95

[Close]

BLAST of Clc02G09800 vs. TAIR 10
Match: AT1G28395.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSS---PFRMATSKPLSHRTFRCAPEMSFCLESMMP 126
           SVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M+P
Sbjct: 6   SVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETMLP 65

Query: 127 FHSASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           +H+A++SAL+ SMLS++R   GW+ +G D+TR
Sbjct: 66  YHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of Clc02G09800 vs. TAIR 10
Match: AT1G28395.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSS---PFRMATSKPLSHRTFRCAPEMSFCLESMMP 126
           SVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M+P
Sbjct: 6   SVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETMLP 65

Query: 127 FHSASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           +H+A++SAL+ SMLS++R   GW+ +G D+TR
Sbjct: 66  YHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of Clc02G09800 vs. TAIR 10
Match: AT1G28395.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 41/92 (44.57%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSS---PFRMATSKPLSHRTFRCAPEMSFCLESMMP 126
           SVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M+P
Sbjct: 6   SVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETMLP 65

Query: 127 FHSASSSALMTSMLSITRHSCGWLPEGKDKTR 156
           +H+A++SAL+ SMLS++R   GW+ +G D+TR
Sbjct: 66  YHTATASALLNSMLSVSRR--GWIVDGLDETR 95

[Close]

BLAST of Clc02G09800 vs. TAIR 10
Match: AT1G28395.4 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-10
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSS---PFRMATSKPLSHRTFRCAPEMSFCLESMMP 126
           SVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M+P
Sbjct: 6   SVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETMLP 65

Query: 127 FHSASSSALMTSMLSITRHSCGWL 148
           +H+A++SAL+ SMLS++R   GW+
Sbjct: 66  YHTATASALLNSMLSVSRR--GWI 87

[Close]

BLAST of Clc02G09800 vs. TAIR 10
Match: AT1G28395.5 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G33847.1). )

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-10
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 67  SVFRSFSGSARRAAAHIGSQAKPSSSS---PFRMATSKPLSHRTFRCAPEMSFCLESMMP 126
           SVFRS +  A   A    +  KP  SS    FRM    PL++R FR   E+S C+E+M+P
Sbjct: 6   SVFRSAASRASSTAFRFSAGPKPMPSSARTAFRMPKQSPLTNRIFRSPVELSCCVETMLP 65

Query: 127 FHSASSSALMTSMLSITRHSCGWL 148
           +H+A++SAL+ SMLS++R   GW+
Sbjct: 66  YHTATASALLNSMLSVSRR--GWI 87

The following BLAST results are available for this feature:

BLAST of Clc02G09800 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649972.1	3.3e-37	93.26	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucu...	[more]
XP_011649974.1	7.5e-37	93.26	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial isoform X2 [Cucu...	[more]
XP_038901103.1	7.5e-37	92.13	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial-like isoform X1 [Benincasa his...	[more]
XP_016901879.1	8.2e-36	91.01	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
XP_016901844.1	3.1e-35	89.89	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]

BLAST of Clc02G09800 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	8.4e-07	43.04	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of Clc02G09800 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E0Y3	4.0e-36	91.01	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A1S4E0U8	1.5e-35	89.89	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X2 ...	[more]
A0A6J1J7G1	4.4e-35	91.01	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1FS03	9.8e-35	89.89	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]
A0A6J1CGX5	1.3e-34	91.01	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like isoform X1 ...	[more]

BLAST of Clc02G09800 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28395.2	1.4e-12	44.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.1	1.4e-12	44.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.3	1.4e-12	44.57	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.4	6.3e-10	44.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G28395.5	6.3e-10	44.05	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033251	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial	PANTHER	PTHR33156:SF48	PROTEIN NUCLEAR FUSION DEFECTIVE 6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 65..150
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 65..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09800.1	Clc02G09800.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000741	karyogamy