Clc02G09660 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09660
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Nuclear cap-binding protein subunit 2
Location	ClcChr02: 13803108 .. 13806920 (-)
RNA-Seq Expression	Clc02G09660
Synteny	Clc02G09660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAATGTTGCCGTTTTAGTTTGGGCGTCGTGTGGGAGTAGGCTGCTGGTGTTTCAAATTATGTTAAGACATGTTGTGGTGGTAGGCTGGTAGCATCTGTTCAACAACTTTAACCTAGTCCGCTGTCCTGTATAAATTATCTTAACTAATGCAAGTTGTTTCTTATTCCAAAAGGAATTGATTTTGTACCGTATGTTTGTTTAATAGCTTTTGATCGGTATTATAGTTTTATCAGCATTATTTTGAGTTAAGTGGGTTTGGTGAGATTTCAACCTCTGACCTCCTGGTTAGTTGAGGATACATGCCTAAATCTAGTTGAAGTTGGCAAATTTGTGACCATTATGGCAAAGGGTATTCTGATTATTGTTATTACAAATCACAGTGTCTTGATGTTAAAACATTGAGAACTATACAAAACTCCAATTACTTTGAAAGAAATCTATAGAAAGGAATAATGTCACATATAAGCAGTTAGATAGATGATATAGATACTTTTTCTATGATTTCTATCTAAGACAAGATTCTTGCTTTCAACTTTATCATTTGTAGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATGAGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTGTAAGACTTCATAGCTCTTCCTAACTAGTAGAACCATCTTAATATGCTTTATATCAATATTCAACCAACAATTTTCTACCATGGGAATTAATTACTAAACTTATTTATTTATGTCTCTGCTGTTCAAAACCCTCTATGGTTGATAGAATCATACAAGAGAGTTAGGGGAGGGAGAGAGTAGTCTCTTGAAAACTACCCATATGTGTTATTGACCTTGTTACTTAATTATATGATGATTTTTCTATAGATACTCTGATTTCTACCAGTGGTCCATTAATGCAGTTTCCCTACTCTTTTGTTCATAGATATCACTTCATATGCTCCCATAAGATTTTTGATCCTCATGATTGTCACCTGTTTATTGCGTAACATTTTGAATACTTGAAAGCAGTTGATAATGATTGATATATCTTTCTGGGTCGATTTTAACCTTGAGATTATTTGCTCATCTCATGGCTTTAGTACTCATTCTTGCAAGAAATGATTTACATATATCTGTCTCTAAGCCTTTCAAATTATTGGGCAAATCCTTTTAAGTGGCTGCTTATTTCATCTGTACTTTGTTAGATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACTGTTTTTAATCTATGTCACATTCCTGACTTGGAGTTTACCATCACTTCCTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAGTCTGATGCTCTGAAAATTAAATTTCTTTTGCATTTCTTTGGTTACCACCAACCAATATTAGTTTCTCTTTTTATACATACATACTTAAATATATGTGTGTGTGTAGGATAACAAATATACTTATATAATATTGGTTTCAATGACTAATTCTTTTGCACAATGGACACAACATTATGTCAATGTTCCAAAAACCATTACATAGGTATGTTGGGGATGCCTTTTAAAAAAAAATTATATGATGTGTATGGATTGATATATTTAATACTTCATAATAGATAAAACATAAATTTAACATAAAAATAAACTTTACTTAACAAAAAACATATAAAACCAAAGTCAATTACAATGTTGCAAGGTTTGGTTGGCTGTGGCTGGAGGAAGAAGATATGATCCTAACGGTTTAAGAACGATCTGGAGCATGGGAATTAGATTATGTTATAAGATCCAACTCATTTAGTCTGTTGAGTTGTGTGACATTGATGACCATCATCACCCTACTGACTTCTCTGTGTGGCATGTGATACATATCCTAAACTTTTGTTGAATTTAATAACTCATTCATATGTAAGTGCTTTCTGATAGTGTTAATTTTTTTGACACCTCACGTCCTTTAAATTTCACATTTCTTTTTAGTTTCCTTAATTTATTGAACGTAGAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATGTAAGTTGCTTTGAGGAATGCTCTACATATATATTGTGTATAAACGTGATTTGATGTGCCTTTATTTCATGTTTTTCCTTTTCTCCTGCAGATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAGAGGTATCAAATTTCTAAAGCATTTTAATCATCTGTGAACGATAATTTATTTGCACTCTGGCATTTTTCTGGTATTTATTGGACTACATTATTGTTGTTTCAAAAACTAGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGACTGGTAATTTCTAAACAATGCCTTTGCCTCTAGGACTTGTTTGAGAGTAATTCTAGAAAAAGTGGTCTTTAGTGAAGAGTTTTTATTAAAAGTAATTATTGTATATTTATTTTAGTGTTCGATTCTACACATTTAGAAGGGAGTTTAATACGAAGTGATTTTGAATGAGTTAATTTTTGACATAGAATTGATTAAGTGCATGTTTGGGAGTTATTCTTACATTGTTAAAATAACTTTTATCATGTTCAAATCACTCTAAAATATGCTTTTAATCACTCAAATAATTTAAATATAATTTTCATATCATCAAAATTGGTTTGGAATGATTGGAAGCTTGTTTCAAAGGATTTTGAAAATGACAAAATTGACTTTAACCATTCTAGAATAAGACTCAAACATGTCCTTAGTCATTCCAAAATCGACCCAATCATGCCCTTAGTCATTCCAAAATCACTCCAACCATGTCCTTAAGTCATCTTTGTGTGCTTAAATTTTCACCAGAGGCACCAGATGCCTACATGCCATATTTTCCTTAGTTACACAAAGCTGGATGTAATCAACAATGTCTGGTAGTTTGGTCAGGCTTTCATTGCTTTTTAATAAATTCCGTTAACTTCAGTTGTTATCATTATTATGTAAACTGCCTTTCTATGGTTTTGGCTGTATATATTGCTTTGCTTCAGTATTTAACAGTTTGGGCTGTTACAGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAACCCGAGTGTGATTTTCATATCATAATGTGACGAGGAATCATTTACACTGGTGTTTTGTAGTTGAGCGCAAAGTGATAAGGGACAAGTTGGTTGTGCATGTCAAAACTAATGGGTTTATTCTTTTTTCATGCCATTAGGTACTTTGTGCTATTACAAGAATGAAGGAATGACCATGAATGGCTGTCTGTACTGTTTATTACTATAAGAATCAAGTAGACATTTTGTCGGAACTATCTTCAGAAAAATGAAGAATCCGATTCC

mRNA sequence

ATGCCAAATGTTGCCGTTTTAGTTTGGGCGTCGTGTGGGAGTAGGCTGCTGGTGTTTCAAATTATGTTAAGACATGTTGTGGTGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATGAGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACTGTTTTTAATCTATGTCACATTCCTGACTTGGAGTTTACCATCACTTCCTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAGAGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGACTGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAACCCGAGTGTGATTTTCATATCATAATGTGACGAGGAATCATTTACACTGGTGTTTTGTAGTTGAGCGCAAAGTGATAAGGGACAAGTTGGTTGTGCATGTCAAAACTAATGGGTTTATTCTTTTTTCATGCCATTAGGTACTTTGTGCTATTACAAGAATGAAGGAATGACCATGAATGGCTGTCTGTACTGTTTATTACTATAAGAATCAAGTAGACATTTTGTCGGAACTATCTTCAGAAAAATGAAGAATCCGATTCC

Coding sequence (CDS)

ATGCCAAATGTTGCCGTTTTAGTTTGGGCGTCGTGTGGGAGTAGGCTGCTGGTGTTTCAAATTATGTTAAGACATGTTGTGGTGGACCCATCGAAGCTATCTGTTTATCGGGATAGAAGATTTCATGGAACACAAGATGAATTTGAAGTGGCACTTCAGACTTCAACCACCGTTTATGTGGGAAATATGTCCTTTTATACAACGGAAGAGCAAGTTTATGAGCTTTTCTTTCGAGCTGGAGAAATTAAGAAGATAATCATGGGTTTGGATAAGAATTCAAAAACACCTTGTGGCTTTTGTTTTGTCCTATACTATTCTCGGGAGGATACCGAGGATGCTGTAAAATATATAAGTGGAACAATTCTTGATGATCGTCCCATTCGTGTGGATTTTGATTGGGGATTTCAGGATGGCAGGCAATGGGGCCGTGGTCGAAGTGGTGGACAGGTACTGTTTTTAATCTATGTCACATTCCTGACTTGGAGTTTACCATCACTTCCTGTTTATTTCCTTTTGCTTTGTTGTTCACAGGTGCGTGATGAATATCGAACGGACTATGATCCTGATATCCTTTTTTCTTTTAATACTTTTACTCACTATATAGATTATGGAAACCCACAAGGTGGGTATGGAAAATTAGTTCAGAAAGAGTTGGAAGAACAGAGGCAGCTTGTGGATTATGGTACTGGTTCACTAGGCTCTATGCCGCCAGTCATGCCTCAATATGGAAAACATGGTGGAAGCCACGGACATGGGCATCGTCATGGTAGAGATTACCACCATCGTAAGCGCTATCGAGATGATGATCACCATGCTCACGAGAGCTTTAAGAGAACTTCAGATTATGAGTCTAGGAGAAACCCCGATCATGAATCGAGACTGGAGAAGAATCCAAGGTTTCGGGAGAGTGGCGATTCTGACGAAGAGGATGACGATGACCAAAAGCAGCGACACTAA

Protein sequence

MPNVAVLVWASCGSRLLVFQIMLRHVVVDPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH

Homology

[Close]

BLAST of Clc02G09660 vs. NCBI nr
Match: KAG7026974.1 (Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 497.3 bits (1279), Expect = 1.0e-136
Identity = 258/328 (78.66%), Postives = 267/328 (81.40%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DPSKLSVYRDRRF GTQDEFE AL +STTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPSKLSVYRDRRFQGTQDEFEHALLSSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVK+ISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKFISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYG---- 208
           QVLFL YVTF T SLPSLPVYFL L C+QVRDEYRTDYDPDILFSFNT TH IDY     
Sbjct: 127 QVLFLTYVTFTTRSLPSLPVYFLFLFCTQVRDEYRTDYDPDILFSFNTVTHVIDYKPLSL 186

Query: 209 ----------------------------------NPQGGYGKLVQKELEEQRQLVDYGTG 268
                                                GGYGKLVQKELE QRQLVDYGT 
Sbjct: 187 MLCCIFLELDMFFGMLDMCLDESVSSEVYMLPTLQLLGGYGKLVQKELEAQRQLVDYGTD 246

Query: 269 SLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDDDHHAHESFKRTSDYESRRNPDH 319
           SLGSMPPVM Q+G HGGSHGHG+RHGRDYHHRKR+RDDD HAHES KRTSD+ESRRN +H
Sbjct: 247 SLGSMPPVMSQHGNHGGSHGHGYRHGRDYHHRKRHRDDDRHAHESSKRTSDFESRRNSNH 306

[Close]

BLAST of Clc02G09660 vs. NCBI nr
Match: XP_038900343.1 (nuclear cap-binding protein subunit 2 [Benincasa hispida] >XP_038900344.1 nuclear cap-binding protein subunit 2 [Benincasa hispida])

HSP 1 Score: 444.1 bits (1141), Expect = 1.0e-120
Identity = 233/289 (80.62%), Postives = 236/289 (81.66%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPTKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSM-PVMTQYGKHGGSHGHGHRHGRDYHHRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 318
           D HAHES KRTSDYESRRNPDH+SR EKNPRFRESGDSDEEDDDDQKQR
Sbjct: 247 DRHAHESSKRTSDYESRRNPDHDSRPEKNPRFRESGDSDEEDDDDQKQR 249

[Close]

BLAST of Clc02G09660 vs. NCBI nr
Match: XP_008464581.1 (PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo])

HSP 1 Score: 442.2 bits (1136), Expect = 3.8e-120
Identity = 230/290 (79.31%), Postives = 236/290 (81.38%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLSVYRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Clc02G09660 vs. NCBI nr
Match: XP_004137136.1 (nuclear cap-binding protein subunit 2 [Cucumis sativus] >XP_031739893.1 nuclear cap-binding protein subunit 2 [Cucumis sativus] >KAE8649330.1 hypothetical protein Csa_015022 [Cucumis sativus])

HSP 1 Score: 442.2 bits (1136), Expect = 3.8e-120
Identity = 229/290 (78.97%), Postives = 237/290 (81.72%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Clc02G09660 vs. NCBI nr
Match: XP_022986365.1 (nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima] >XP_022986366.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima] >XP_022986367.1 nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 438.7 bits (1127), Expect = 4.2e-119
Identity = 227/290 (78.28%), Postives = 235/290 (81.03%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DPSKLSVYRDRRF GTQDEFE+ALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIR DFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFALYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSMP V+PQYGKHGGSHG+GHRHGRDYH+RKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSMPSVIPQYGKHGGSHGNGHRHGRDYHNRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDY+SRRNPDHESR +KNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYDSRRNPDHESRPQKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Clc02G09660 vs. ExPASy Swiss-Prot
Match: Q9XFD1 (Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 PE=1 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 2.0e-92
Identity = 185/295 (62.71%), Postives = 216/295 (73.22%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           + +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEIKKIIMG
Sbjct: 7   EQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIRVDFDWGFQ+GRQWGRGRSGG
Sbjct: 67  LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDP-----------------ARG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHR 268
           GYGKLVQKELE QRQLVDYGTGSLG+ P   P  YG   + GG++G G  +RHGR  +HR
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHR 246

Query: 269 KRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 318
           KR RDDD +  ++ +R +D+ESRR+ D + R EKNPRFRESGDSD++ +DD+K+R
Sbjct: 247 KRQRDDDRYGRDNSRRNTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Clc02G09660 vs. ExPASy Swiss-Prot
Match: Q84L14 (Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CBP20 PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.1e-80
Identity = 174/291 (59.79%), Postives = 195/291 (67.01%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLS YRDRRF GTQ+E+E ALQ S TVYVGNMSFYTTEEQ YELF RAGEI+KIIMG
Sbjct: 7   DPTKLSAYRDRRFTGTQEEYEAALQASVTVYVGNMSFYTTEEQAYELFSRAGEIRKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCF+LYYSRED EDAVKYISGT+LDDRPIRVDFDWGF++GRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFILYYSREDAEDAVKYISGTMLDDRPIRVDFDWGFEEGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHG--HRHGRDYHHRKRYR 268
           GYGK+VQKELE QR+LVDYG       P   PQY +     G+G  +R+ RDY  RKRYR
Sbjct: 187 GYGKMVQKELEAQRELVDYGG---AFQPNAPPQYDRGDRKRGYGDSYRNDRDY-QRKRYR 241

Query: 269 DDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 318
           +D+     S +R  D E +R+       EKNPRFRE GDSDEEDDD  K+R
Sbjct: 247 NDE----RSSQRAPDSEFKRDAIDS---EKNPRFREKGDSDEEDDDYDKRR 241

[Close]

BLAST of Clc02G09660 vs. ExPASy Swiss-Prot
Match: B7P877 (Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.5e-45
Identity = 93/186 (50.00%), Postives = 119/186 (63.98%), Query Frame = 0


Query: 33  LSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKN 92
           LS YRD+ F G++ E E  L+ STT+YVGNMSFYTTEEQ+YELF + G++KK+IMGLD+ 
Sbjct: 5   LSSYRDQHFKGSRSEQERLLRLSTTLYVGNMSFYTTEEQIYELFSKCGDVKKVIMGLDRF 64

Query: 93  SKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVLF 152
            KTPCGFCFV YY+RED E+A++Y++GT LDDR IR D+D GF +GRQ+GRG+SGG    
Sbjct: 65  HKTPCGFCFVEYYTREDAENAIRYVNGTKLDDRIIRTDWDAGFVEGRQFGRGKSGG---- 124

Query: 153 LIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYGK 212
                                   QVRDEYRTDYD                 + +GGYGK
Sbjct: 125 ------------------------QVRDEYRTDYD-----------------SGRGGYGK 145

Query: 213 LVQKEL 219
           L+ + +
Sbjct: 185 LMAQRV 145

[Close]

BLAST of Clc02G09660 vs. ExPASy Swiss-Prot
Match: Q9CQ49 (Nuclear cap-binding protein subunit 2 OS=Mus musculus OX=10090 GN=Ncbp2 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.1e-45
Identity = 96/186 (51.61%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 32  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDK 91
           +LS YRD+ F G  +E E  L+ S T+YVGN+SFYTTEEQ+YELF ++G+IKKIIMGLDK
Sbjct: 16  ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 92  NSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVL 151
             KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+D GF++GRQ+GRGRSGG   
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGG--- 135

Query: 152 FLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYG 211
                                    QVRDEYR DYD                   +GGYG
Sbjct: 136 -------------------------QVRDEYREDYDAG-----------------RGGYG 156

Query: 212 KLVQKE 218
           KL QK+
Sbjct: 196 KLAQKQ 156

[Close]

BLAST of Clc02G09660 vs. ExPASy Swiss-Prot
Match: B1WC40 (Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus OX=10116 GN=Ncbp2 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 7.1e-45
Identity = 96/186 (51.61%), Postives = 116/186 (62.37%), Query Frame = 0


Query: 32  KLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDK 91
           +LS YRD+ F G  +E E  L+ S T+YVGN+SFYTTEEQ+YELF ++G+IKKIIMGLDK
Sbjct: 16  ELSEYRDQHFRGDNEEQEKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK 75

Query: 92  NSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVL 151
             KT CGFCFV YYSR D E+A++YI+GT LDDR IR D+D GF++GRQ+GRGRSGG   
Sbjct: 76  MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQYGRGRSGG--- 135

Query: 152 FLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQGGYG 211
                                    QVRDEYR DYD                   +GGYG
Sbjct: 136 -------------------------QVRDEYREDYDAG-----------------RGGYG 156

Query: 212 KLVQKE 218
           KL QK+
Sbjct: 196 KLAQKQ 156

[Close]

BLAST of Clc02G09660 vs. ExPASy TrEMBL
Match: A0A0A0KVX7 (Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020 PE=3 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 7.2e-125
Identity = 235/290 (81.03%), Postives = 243/290 (83.79%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLS+YRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPTKLSIYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDPDILFSF            +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPDILFSFQ-----------EG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSM PVMPQYGKHGGSHGHG+RHGRDYHHRKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSMAPVMPQYGKHGGSHGHGNRHGRDYHHRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 257

[Close]

BLAST of Clc02G09660 vs. ExPASy TrEMBL
Match: A0A1S3CLT9 (Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 1.8e-120
Identity = 230/290 (79.31%), Postives = 236/290 (81.38%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLSVYRDRRFHG+QDEFEVALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPTKLSVYRDRRFHGSQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSM PVM QYGKHGGSHGHGHRHGRDYHHRKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSMAPVMTQYGKHGGSHGHGHRHGRDYHHRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDYESRRN ++ESR EKNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYESRRNSNYESRPEKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Clc02G09660 vs. ExPASy TrEMBL
Match: A0A6J1J7C7 (Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111484127 PE=3 SV=1)

HSP 1 Score: 438.7 bits (1127), Expect = 2.0e-119
Identity = 227/290 (78.28%), Postives = 235/290 (81.03%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DPSKLSVYRDRRF GTQDEFE+ALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCF LYYSREDTEDAVKYISGTILDDRPIR DFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFALYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGSMP V+PQYGKHGGSHG+GHRHGRDYH+RKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSMPSVIPQYGKHGGSHGNGHRHGRDYHNRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDY+SRRNPDHESR +KNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYDSRRNPDHESRPQKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Clc02G09660 vs. ExPASy TrEMBL
Match: A0A6J1CIF4 (Nuclear cap-binding protein subunit 2 OS=Momordica charantia OX=3673 GN=LOC111011242 PE=3 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.3e-118
Identity = 226/289 (78.20%), Postives = 234/289 (80.97%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DP+KLSVYRDRRF GTQDEFE+ALQTS TVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPTKLSVYRDRRFQGTQDEFEIALQTSITVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKN+KTPCGFCFVLYYSRED EDAVKY+SGTILDDRPIRVDFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNTKTPCGFCFVLYYSREDAEDAVKYMSGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGS+PPV+PQYGKHGG HGHGHRHGRDY HRKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSVPPVIPQYGKHGGGHGHGHRHGRDY-HRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 318
           DHHAHES KRTSDYESRRNPDHESR EKNPRFRESGDSDEEDDDD+KQR
Sbjct: 247 DHHAHESSKRTSDYESRRNPDHESRPEKNPRFRESGDSDEEDDDDRKQR 249

[Close]

BLAST of Clc02G09660 vs. ExPASy TrEMBL
Match: A0A6J1FX36 (Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111448282 PE=3 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.9e-118
Identity = 226/290 (77.93%), Postives = 235/290 (81.03%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           DPSKLSVYRDRRF GTQDEFE+ALQTSTTVYVGNMSFYTTEEQVYELF RAGEIKKIIMG
Sbjct: 7   DPSKLSVYRDRRFQGTQDEFELALQTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIR DFDWGFQDGRQWGRGRSGG
Sbjct: 67  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRADFDWGFQDGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDPG-----------------RG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMPQYGKHGGSHGHGHRHGRDYHHRKRYRDD 268
           GYGKLVQKELE QRQLVDYGTGSLGS+P V+PQYGKHGGSHG+G RHGRDYH+RKRYRDD
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGSVPSVIPQYGKHGGSHGNGPRHGRDYHNRKRYRDD 246

Query: 269 DHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQRH 319
           D HAHES KRTSDY+SRRNPDHESR +KNPRFRESGDSDEEDDDD+KQRH
Sbjct: 247 DRHAHESSKRTSDYDSRRNPDHESRPQKNPRFRESGDSDEEDDDDRKQRH 251

[Close]

BLAST of Clc02G09660 vs. TAIR 10
Match: AT5G44200.1 (CAP-binding protein 20 )

HSP 1 Score: 340.5 bits (872), Expect = 1.5e-93
Identity = 185/295 (62.71%), Postives = 216/295 (73.22%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           + +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEIKKIIMG
Sbjct: 7   EQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIRVDFDWGFQ+GRQWGRGRSGG
Sbjct: 67  LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDP-----------------ARG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHR 268
           GYGKLVQKELE QRQLVDYGTGSLG+ P   P  YG   + GG++G G  +RHGR  +HR
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHR 246

Query: 269 KRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 318
           KR RDDD +  ++ +R +D+ESRR+ D + R EKNPRFRESGDSD++ +DD+K+R
Sbjct: 247 KRQRDDDRYGRDNSRRNTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Clc02G09660 vs. TAIR 10
Match: AT5G44200.2 (CAP-binding protein 20 )

HSP 1 Score: 340.5 bits (872), Expect = 1.5e-93
Identity = 185/295 (62.71%), Postives = 216/295 (73.22%), Query Frame = 0


Query: 29  DPSKLSVYRDRRFHGTQDEFEVALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMG 88
           + +KLS YRDRRF GTQ+EF+ AL+ STTVY+GN+SFYTTEEQ+YELF RAGEIKKIIMG
Sbjct: 7   EQAKLSAYRDRRFSGTQEEFDEALRASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIMG 66

Query: 89  LDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGG 148
           LDKN+KTPCGFCFVL+YSREDTEDAVKYISGTILDDRPIRVDFDWGFQ+GRQWGRGRSGG
Sbjct: 67  LDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGG 126

Query: 149 QVLFLIYVTFLTWSLPSLPVYFLLLCCSQVRDEYRTDYDPDILFSFNTFTHYIDYGNPQG 208
                                       QVRDEYRTDYDP                  +G
Sbjct: 127 ----------------------------QVRDEYRTDYDP-----------------ARG 186

Query: 209 GYGKLVQKELEEQRQLVDYGTGSLGSMPPVMP-QYG---KHGGSHGHG--HRHGRDYHHR 268
           GYGKLVQKELE QRQLVDYGTGSLG+ P   P  YG   + GG++G G  +RHGR  +HR
Sbjct: 187 GYGKLVQKELEAQRQLVDYGTGSLGAYPQAAPTNYGNGRRGGGNYGQGGQNRHGRGDYHR 246

Query: 269 KRYRDDDHHAHESFKRTSDYESRRNPDHESRLEKNPRFRESGDSDEEDDDDQKQR 318
           KR RDDD +  ++ +R +D+ESRR+ D + R EKNPRFRESGDSD++ +DD+K+R
Sbjct: 247 KRQRDDDRYGRDNSRRNTDHESRRDTDSDMRPEKNPRFRESGDSDDDGEDDRKRR 256

[Close]

BLAST of Clc02G09660 vs. TAIR 10
Match: AT1G66260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-08
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 52  LQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTE 111
           ++  TTVY+ N+    T E + EL+   GE+K+  +  DKN + P G   V+Y  R D  
Sbjct: 103 VEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGR-PSGSAEVVYMRRSDAI 162

Query: 112 DAVKYISGTILDDRPIRVD 131
            A++  +  +LD RP++++
Sbjct: 163 QAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of Clc02G09660 vs. TAIR 10
Match: AT1G66260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-08
Identity = 26/79 (32.91%), Postives = 45/79 (56.96%), Query Frame = 0


Query: 52  LQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTE 111
           ++  TTVY+ N+    T E + EL+   GE+K+  +  DKN + P G   V+Y  R D  
Sbjct: 103 VEVGTTVYITNLDQGVTNEDIRELYAEIGELKRYAIHYDKNGR-PSGSAEVVYMRRSDAI 162

Query: 112 DAVKYISGTILDDRPIRVD 131
            A++  +  +LD RP++++
Sbjct: 163 QAMRKYNNVLLDGRPMKLE 180

[Close]

BLAST of Clc02G09660 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 56.2 bits (134), Expect = 5.5e-08
Identity = 27/81 (33.33%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 50  VALQTSTTVYVGNMSFYTTEEQVYELFFRAGEIKKIIMGLDKNSKTPCGFCFVLYYSRED 109
           +A + S  ++V  +S YTT++ + +LF   G+IK+  +  D  ++ P GF F+ + S +D
Sbjct: 1   MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 110 TEDAVKYISGTILDDRPIRVD 131
              A+K + G I+D R I V+
Sbjct: 61  ARKALKSLDGKIVDGRLIFVE 81

The following BLAST results are available for this feature:

BLAST of Clc02G09660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026974.1	1.0e-136	78.66	Nuclear cap-binding protein subunit 2 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_038900343.1	1.0e-120	80.62	nuclear cap-binding protein subunit 2 [Benincasa hispida] >XP_038900344.1 nuclea...	[more]
XP_008464581.1	3.8e-120	79.31	PREDICTED: nuclear cap-binding protein subunit 2 [Cucumis melo]	[more]
XP_004137136.1	3.8e-120	78.97	nuclear cap-binding protein subunit 2 [Cucumis sativus] >XP_031739893.1 nuclear ...	[more]
XP_022986365.1	4.2e-119	78.28	nuclear cap-binding protein subunit 2-like isoform X1 [Cucurbita maxima] >XP_022...	[more]

BLAST of Clc02G09660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XFD1	2.0e-92	62.71	Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CBP20 P...	[more]
Q84L14	1.1e-80	59.79	Nuclear cap-binding protein subunit 2 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
B7P877	5.5e-45	50.00	Nuclear cap-binding protein subunit 2 OS=Ixodes scapularis OX=6945 GN=Cbp20 PE=3...	[more]
Q9CQ49	7.1e-45	51.61	Nuclear cap-binding protein subunit 2 OS=Mus musculus OX=10090 GN=Ncbp2 PE=1 SV=...	[more]
B1WC40	7.1e-45	51.61	Nuclear cap-binding protein subunit 2 OS=Rattus norvegicus OX=10116 GN=Ncbp2 PE=...	[more]

BLAST of Clc02G09660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KVX7	7.2e-125	81.03	Nuclear cap-binding protein subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_4G129020...	[more]
A0A1S3CLT9	1.8e-120	79.31	Nuclear cap-binding protein subunit 2 OS=Cucumis melo OX=3656 GN=LOC103502423 PE...	[more]
A0A6J1J7C7	2.0e-119	78.28	Nuclear cap-binding protein subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC11148412...	[more]
A0A6J1CIF4	1.3e-118	78.20	Nuclear cap-binding protein subunit 2 OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FX36	2.9e-118	77.93	Nuclear cap-binding protein subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111448...	[more]

BLAST of Clc02G09660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G44200.1	1.5e-93	62.71	CAP-binding protein 20	[more]
AT5G44200.2	1.5e-93	62.71	CAP-binding protein 20	[more]
AT1G66260.1	3.2e-08	32.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G66260.2	3.2e-08	32.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G46020.1	5.5e-08	33.33	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 57..130 e-value: 1.3E-20 score: 84.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 58..128 e-value: 1.2E-11 score: 44.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 56..134 score: 15.186867
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 29..190 e-value: 4.5E-31 score: 109.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 227..318
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..304
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 247..261
None	No IPR available	PANTHER	PTHR18847:SF0	NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2	coord: 25..274
IPR027157	Nuclear cap-binding protein subunit 2	PANTHER	PTHR18847	20 KD NUCLEAR CAP BINDING PROTEIN	coord: 25..274
IPR034148	NCBP2, RNA recognition motif	CDD	cd12240	RRM_NCBP2	coord: 58..135 e-value: 5.31176E-50 score: 158.864
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 49..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09660.2	Clc02G09660.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045292	mRNA cis splicing, via spliceosome
cellular_component	GO:0005846	nuclear cap binding complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000339	RNA cap binding
molecular_function	GO:0003676	nucleic acid binding