Clc02G09485 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09485
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 13294194 .. 13296639 (-)
RNA-Seq Expression	Clc02G09485
Synteny	Clc02G09485

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCAATGTCTTGAGCTTGCCGGGATGGTAGCGTGACTGTGAAGTGGTCAGGCGGAGGGAAGACTCTTCTCTTTCGAGCTATTTGTCTTCGGTTGTCGTCTGGAGAGAACTCCGCTGTCACTTAGGAATTCTTCCGAGAGGTTCAACAACCTTTTAGCCTTCAGGTCTGCCCTTTTATAGATGTTGCGTTGCAATCGCTGGTAAATTTGCATGATTTGAGGCTAAATTTCTGCCTTGCGTCCATCTCGCCTAATCGCGTGATTTCCGGTTTAATTTAGATCCACCACTCTCGCCGCAGATCAAGTATATCAATCTCCCGACAATCTCTCAAGATTCTTATCTGATTCTCTGCTACCTTGCATTTCTGCTTGATATGCGTCCATGGATAACTTGGGTTCCTGCGTTCAAGTATGCCAACGCATCCATGGGTTGTTTGCGTTCCTACGTTGAAGGGTTGCCAATGCATCCATAGGTTGCTTGCGTTCATGCGTTAAAACATGCATTTTAGGCTCAAAAAGCTTTAAAACAATTATCTTCATCAATTTACAAGAGTAGAATACATAGGAAGATTTGTAAATAGAATTCAACCCCTACTACCGTATGATTCTCTATTTAAACTCTATTTTTTTAAGAGAAAGAAATACAAGTTGTCACTCATTTATATGTCTTCATTGTTTCTTCATTTGTCATCTCATAGTCCACCATAACGAACTAAAATATGAACATAGGTCATCTAATACTCTATCTAACATCAACACTCCTTTTTACTTACTTTCTAAATTTTGCTACATGTATTCTTTTTTATTATAAATTTGCAATTTAATTAAATCAAGTTTTTTATTATATTTTAGTTGAGTGATAGAGAATGTTGCAATTATAACCTCTTTTTTCTTCTCTCCTAGTACGCTGCATTCATCCTTCATCTCTTTTTGTTGAATGAAAGTTTGTATTGAATTGATTTATAATCATTTTTTTCCTCTAATTTTTAATATTTACATTTAAAATAATGTCACTGTTTTTTTAATTATATTTTTTTTTTAGTGTCCACAATGTATTTAATTTATTCTTTAATTCCATTAGTAATTATTGGCTATATATCAAGCCAATGTTTCATTATATCCAACCTTTCTCATTCCAACCATATGAAGGAAGGGTGAAAAAATAGTAGTACGGTTCCTAAATTTTTAATCTAGTTTTTATTTAATCCTTACATCTTAAAATGTTACACATTTAAATTTAAGTTTTAAATTTCTTTTTAATTTAGTTTTTATGTTTTAAAATGTTACAATTTTACCTTTGAGATTTGAGTTTTATTTTAGTTTGGTCCCTAAGTTTTAAGATTTACACTTTTAATGTCGATATTTTTTCTAAATACTCACTTTCTCTCTTTAGTATTAATTTCTATTAATTAATTTAAAAGAATTAAAAAAGTCATAACTAATTAAATTTTATTATATTTTATCACTTTAAATTTTAATTTTTAAATTTCACTTAATAACTATTTTAAATTAACTAATAGACATTGAGGTTAATAATTGAAAGTTAGAATTTAATGAAAAATTGAGGTTAAAAGTATAAATAAAATCTAGGACCAAATTGAAACAAAACTCAAAACTCAAATCTCAAGGGTAAAATTATAACATTTTGAAACCTAGAGATTAAATTGAAACCAATCTCAAAATTTAAGGACTGAATGCATAACATTTTAAAACCTAGGAACCAAATGAAAATTAAACCCAAAACCTTAGGACTAAAAAAGTATTTTTCCGGAGAAGAATCGGGATATTCGTTAAATCACTGGGAAACTAAGCAGCATTAATTTGGGCCTATTTTCCCATTGAAGCCGTATCGGGCTTTCCATAGTCAAGCAGAATAGCCCAGTTTCGTAAGCCCAACTCAATGTTTTCTTTCCTTTGGATAACAACACAAAGGCCCTAACTATAAGGTTTCATATTTTAATTTTGTCCAAAATTAGAACCAAAAGGAGTGGGGATTCAAATTAGCTATACCAACTTAGATTCCATTTGATAATTATTTTTTTTCAATTATTAAAAATTAAGTTTATAAACACTACAAACTATGAAACTAAAAATTATAGTTTTCTAAAACTTGTTTTGGTTATTTATTTTCTACCTGGAAGTACTTGTGATCAAGGATCTGCCTTTTGCCTTGGGTTAATGGTGTTTCTTTTCTTTCTTTGATTGTGGAATCAGACTGTACTAATCTTGTTAACCTCATTAGTCATGAGAGTTGCGATTTATCTGAGTTGAGTAATTTGGTAGAGGAGATTGTCTCTATGTCTGAGGCTGCCCTGGTTGTGTTCTTCTCTTGGTGTCCTAGATCGGCGAATGGGGCGGCGCACCGTCTGGCTTGTGCGGAAGTGTCTTTTGGTAGTTTTGAAATTAGTTTTGTAAAACTCTCTTCTTCTTGCTCAAGTTGA

mRNA sequence

ATGGCTTCTCAATGTCTTGAGCTTGCCGGGATGGAATTCTTCCGAGAGGTTCAACAACCTTTTAGCCTTCAGGTCTGCCCTTTTATAGATGTTGCGTTGCAATCGCTGGTAAATTTGCATGATTTGAGGCTAAATTTCTGCCTTGCGTCCATCTCGCCTAATCGCATCAAGTATATCAATCTCCCGACAATCTCTCAAGATTCTTATCTGATTCTCTGCTACCTTGCATTTCTGCTTGATATGCGTCCATGGATAACTTGGGTTCCTGCGTTCAAGTATGCCAACGCATCCATGGGTTGTTTGCGTTCCTACGTTGAAGGGATCTGCCTTTTGCCTTGGGTTAATGGTGTTTCTTTTCTTTCTTTGATTGTGGAATCAGACTGTACTAATCTTGTTAACCTCATTAGTCATGAGAGTTGCGATTTATCTGAGTTGAGTAATTTGGTAGAGGAGATTGTCTCTATGTCTGAGGCTGCCCTGGTTGTGTTCTTCTCTTGGTGTCCTAGATCGGCGAATGGGGCGGCGCACCGTCTGGCTTGTGCGGAAGTGTCTTTTGGTAGTTTTGAAATTAGTTTTGTAAAACTCTCTTCTTCTTGCTCAAGTTGA

Coding sequence (CDS)

ATGGCTTCTCAATGTCTTGAGCTTGCCGGGATGGAATTCTTCCGAGAGGTTCAACAACCTTTTAGCCTTCAGGTCTGCCCTTTTATAGATGTTGCGTTGCAATCGCTGGTAAATTTGCATGATTTGAGGCTAAATTTCTGCCTTGCGTCCATCTCGCCTAATCGCATCAAGTATATCAATCTCCCGACAATCTCTCAAGATTCTTATCTGATTCTCTGCTACCTTGCATTTCTGCTTGATATGCGTCCATGGATAACTTGGGTTCCTGCGTTCAAGTATGCCAACGCATCCATGGGTTGTTTGCGTTCCTACGTTGAAGGGATCTGCCTTTTGCCTTGGGTTAATGGTGTTTCTTTTCTTTCTTTGATTGTGGAATCAGACTGTACTAATCTTGTTAACCTCATTAGTCATGAGAGTTGCGATTTATCTGAGTTGAGTAATTTGGTAGAGGAGATTGTCTCTATGTCTGAGGCTGCCCTGGTTGTGTTCTTCTCTTGGTGTCCTAGATCGGCGAATGGGGCGGCGCACCGTCTGGCTTGTGCGGAAGTGTCTTTTGGTAGTTTTGAAATTAGTTTTGTAAAACTCTCTTCTTCTTGCTCAAGTTGA

Protein sequence

MASQCLELAGMEFFREVQQPFSLQVCPFIDVALQSLVNLHDLRLNFCLASISPNRIKYINLPTISQDSYLILCYLAFLLDMRPWITWVPAFKYANASMGCLRSYVEGICLLPWVNGVSFLSLIVESDCTNLVNLISHESCDLSELSNLVEEIVSMSEAALVVFFSWCPRSANGAAHRLACAEVSFGSFEISFVKLSSSCSS

Homology

The following BLAST results are available for this feature:

BLAST of Clc02G09485 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G09485 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G09485 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G09485 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 119..179 e-value: 2.1E-9 score: 37.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09485.1	Clc02G09485.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity