Clc02G09460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Thymidine kinase
Location	ClcChr02: 13282205 .. 13283375 (-)
RNA-Seq Expression	Clc02G09460
Synteny	Clc02G09460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTGCAGGAGTTCGTTTTCGTTGACCTCCTCCAACGGCGCCGCCGTTAGAGCAGAATCTTCTCACCGCCTCGCTGGCGAAGTCCATGTGATCATCGGCCCCATGTTTGCCGGGAAAACCACCGCGCTCCTCCGCCGGATCAAGTCTGAGAGCAACAGTGGCAGGTAAAGAAAATTCCGTTTTTAAGGGTTAAATCAATTGTTGTTATTGCGATCTGCAAACAGATCCAATTCTCTCAACTTGAAGTAGTAAACAGACGGAATTCTCCCCACAAAAAAGTATCGCTGTAACTACTTTTTTTTTTTTTTTTTCCCGGTTGTGAATTGACTGATCCAATTGATGTAGAAATTGATCATGGATTGGATTTCTATCTTCTTCTCTGCTTTTATTTTCAGTGGAATTTGTATTTGATTAGTTATATGATGAGCAGGAATGTGGTGATGATCAAGTCAAGCAAGGACACAAGGTACGCAATAGATTCAGTAGTAACACATGATGGGGCCAAATTTCCGTGCTGGGCACTGCCAGATCTTTCTTGTTTCCGAAAGAAATTTGGAGAAGATGCTTATAATGAGGTGTAACTTTTGTTTGAAGAATCATTGTATTAGGGTACTATTAGTTTGGCGAATTCATCTTGTTTCTCACTCCTTAATAATACCGGCAGCTGGATGTGATTGGTGTTGATGAAGCTCAATTTTTTGACGATCTCTATGATTTTTGCTGCAATGTTGCTGATAAAGATGGCAAAATCATTGTGGTTGCTGGGTTAGATGGAGATTACCTGAGGTATCAAACATTTACATAATATCTTGAAAATTGAGAAACCCAGATGTGAAATTGTTGATCTTTCAAATTCTAATGTGGTGGGTTTTCAATGGTTTTTGGCAGGAGAAGCTTTGGTTCAGTGCTTGATGTTATTCCTCTGGCTGACACAGTAACAAAGTTGACAGCTAGATGTGAAATTTGTGGTAAAAGAGCTTTCTTTACCTTGAGAAAGACAGAGGAGACAAGGACTGAGCTTATCGCTGGGGCCGATGTATATATGCCGGTGTGCCGCCACCACTATGCCAATGGACAAGAAGTCATACAATCTTCCAAGAATGTCATGGGATCTCCAACTATTAGAACTGGCTCAAATCTAGAGGCACGCACTTCACTTAACTAA

mRNA sequence

ATGGAGTCTTGCAGGAGTTCGTTTTCGTTGACCTCCTCCAACGGCGCCGCCGTTAGAGCAGAATCTTCTCACCGCCTCGCTGGCGAAGTCCATGTGATCATCGGCCCCATGTTTGCCGGGAAAACCACCGCGCTCCTCCGCCGGATCAAGTCTGAGAGCAACAGTGGCAGGAATGTGGTGATGATCAAGTCAAGCAAGGACACAAGGTACGCAATAGATTCAGTAGTAACACATGATGGGGCCAAATTTCCGTGCTGGGCACTGCCAGATCTTTCTTGTTTCCGAAAGAAATTTGGAGAAGATGCTTATAATGAGCTGGATGTGATTGGTGTTGATGAAGCTCAATTTTTTGACGATCTCTATGATTTTTGCTGCAATGTTGCTGATAAAGATGGCAAAATCATTGTGGTTGCTGGGTTAGATGGAGATTACCTGAGGAGAAGCTTTGGTTCAGTGCTTGATGTTATTCCTCTGGCTGACACAGTAACAAAGTTGACAGCTAGATGTGAAATTTGTGGTAAAAGAGCTTTCTTTACCTTGAGAAAGACAGAGGAGACAAGGACTGAGCTTATCGCTGGGGCCGATGTATATATGCCGGTGTGCCGCCACCACTATGCCAATGGACAAGAAGTCATACAATCTTCCAAGAATGTCATGGGATCTCCAACTATTAGAACTGGCTCAAATCTAGAGGCACGCACTTCACTTAACTAA

Coding sequence (CDS)

ATGGAGTCTTGCAGGAGTTCGTTTTCGTTGACCTCCTCCAACGGCGCCGCCGTTAGAGCAGAATCTTCTCACCGCCTCGCTGGCGAAGTCCATGTGATCATCGGCCCCATGTTTGCCGGGAAAACCACCGCGCTCCTCCGCCGGATCAAGTCTGAGAGCAACAGTGGCAGGAATGTGGTGATGATCAAGTCAAGCAAGGACACAAGGTACGCAATAGATTCAGTAGTAACACATGATGGGGCCAAATTTCCGTGCTGGGCACTGCCAGATCTTTCTTGTTTCCGAAAGAAATTTGGAGAAGATGCTTATAATGAGCTGGATGTGATTGGTGTTGATGAAGCTCAATTTTTTGACGATCTCTATGATTTTTGCTGCAATGTTGCTGATAAAGATGGCAAAATCATTGTGGTTGCTGGGTTAGATGGAGATTACCTGAGGAGAAGCTTTGGTTCAGTGCTTGATGTTATTCCTCTGGCTGACACAGTAACAAAGTTGACAGCTAGATGTGAAATTTGTGGTAAAAGAGCTTTCTTTACCTTGAGAAAGACAGAGGAGACAAGGACTGAGCTTATCGCTGGGGCCGATGTATATATGCCGGTGTGCCGCCACCACTATGCCAATGGACAAGAAGTCATACAATCTTCCAAGAATGTCATGGGATCTCCAACTATTAGAACTGGCTCAAATCTAGAGGCACGCACTTCACTTAACTAA

Protein sequence

MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSLN

Homology

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BLAST of Clc02G09460 vs. NCBI nr
Match: XP_038901065.1 (thymidine kinase isoform X1 [Benincasa hispida])

HSP 1 Score: 444.5 bits (1142), Expect = 5.7e-121
Identity = 223/236 (94.49%), Postives = 227/236 (96.19%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MESCRSSFSLTSSN A VRAESSH LAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MESCRSSFSLTSSNDAVVRAESSHCLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLS FR+KFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEET TELIAGADVYMPVCR HYANGQEVIQSSKNV+GS TIRTGSNLEA  SL
Sbjct: 181 RKTEETETELIAGADVYMPVCRQHYANGQEVIQSSKNVLGSRTIRTGSNLEALPSL 236

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BLAST of Clc02G09460 vs. NCBI nr
Match: XP_038901066.1 (thymidine kinase isoform X2 [Benincasa hispida])

HSP 1 Score: 441.0 bits (1133), Expect = 6.3e-120
Identity = 220/231 (95.24%), Postives = 224/231 (96.97%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MESCRSSFSLTSSN A VRAESSH LAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MESCRSSFSLTSSNDAVVRAESSHCLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLS FR+KFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLE 232
           RKTEET TELIAGADVYMPVCR HYANGQEVIQSSKNV+GS TIRTGSNLE
Sbjct: 181 RKTEETETELIAGADVYMPVCRQHYANGQEVIQSSKNVLGSRTIRTGSNLE 231

[Close]

BLAST of Clc02G09460 vs. NCBI nr
Match: XP_023513380.1 (thymidine kinase a [Cucurbita pepo subsp. pepo])

HSP 1 Score: 428.3 bits (1100), Expect = 4.2e-116
Identity = 210/236 (88.98%), Postives = 225/236 (95.34%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MES R+SFSLTS++G AV A S HR+AGEVHVIIGPMFAGKTTALLRRIK+ES+SGRNVV
Sbjct: 1   MESLRNSFSLTSTDGGAVSAGSPHRVAGEVHVIIGPMFAGKTTALLRRIKAESSSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLS FR+KFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCC+VADKDGKII+VAGLDGDYLRR FGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCDVADKDGKIIIVAGLDGDYLRRRFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKN++GS  +RTGSNLEA  SL
Sbjct: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNILGSRALRTGSNLEALPSL 236

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BLAST of Clc02G09460 vs. NCBI nr
Match: XP_008464186.1 (PREDICTED: thymidine kinase [Cucumis melo] >TYK11901.1 thymidine kinase [Cucumis melo var. makuwa])

HSP 1 Score: 427.2 bits (1097), Expect = 9.4e-116
Identity = 214/236 (90.68%), Postives = 221/236 (93.64%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MESCRSS SLTSSN  A+R ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSGRNVV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDGAKFPCWALP LS FR+KFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCCNVAD+DGKIIVVAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEET+TELIAGADVYMPVCRHHYA GQEVIQSSKNVMGS TI   SNLEA  SL
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTI--ASNLEALPSL 234

[Close]

BLAST of Clc02G09460 vs. NCBI nr
Match: KAG7010772.1 (Thymidine kinase a [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 425.6 bits (1093), Expect = 2.7e-115
Identity = 209/236 (88.56%), Postives = 224/236 (94.92%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MES R+SFSLTS++G AV A S HR+AGEVHVIIGPMFAGKTTALLRRIK+ES+SGRNVV
Sbjct: 1   MESLRNSFSLTSTDGGAVSAGSPHRVAGEVHVIIGPMFAGKTTALLRRIKAESSSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLS FR+KFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCC+VADKD KII+VAGLDGDYLRR FGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCDVADKDDKIIIVAGLDGDYLRRRFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKN++GS  +RTGSNLEA  SL
Sbjct: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNILGSRALRTGSNLEALPSL 236

[Close]

BLAST of Clc02G09460 vs. ExPASy Swiss-Prot
Match: O81263 (Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2)

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-83
Identity = 144/206 (69.90%), Postives = 177/206 (85.92%), Query Frame = 0


Query: 15  GAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSG-RNVVMIKSSKDTRYAID 74
           G+A+ A+ S+   GE+HVI+GPMFAGKTTALLRR++ E+ +G RNV +IKS KD RY +D
Sbjct: 56  GSAMEAQPSY--PGEIHVIVGPMFAGKTTALLRRVQVEAGTGSRNVALIKSDKDNRYGLD 115

Query: 75  SVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADKDGK 134
           SVVTHDG K PCWALP+LS F+ K G +AY+++DVIG+DEAQFFDDL+DFCC  AD+DGK
Sbjct: 116 SVVTHDGTKMPCWALPELSSFQDKLGTEAYDKVDVIGIDEAQFFDDLHDFCCKAADRDGK 175

Query: 135 IIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTLRKTEETRTELIAG 194
           I+VVAGLDGDY R  FGSVLD+IPLAD+VTKLTARCE+CG+RAFFTLRKT ET+TELI G
Sbjct: 176 IVVVAGLDGDYKRNKFGSVLDIIPLADSVTKLTARCELCGRRAFFTLRKTRETKTELIGG 235

Query: 195 ADVYMPVCRHHYANGQEVIQSSKNVM 220
           ADVYMPVCR HY +GQ VI++++ V+
Sbjct: 236 ADVYMPVCRQHYLDGQIVIEATRIVL 259

[Close]

BLAST of Clc02G09460 vs. ExPASy Swiss-Prot
Match: Q9S750 (Thymidine kinase a OS=Arabidopsis thaliana OX=3702 GN=TK1A PE=1 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 8.4e-83
Identity = 150/222 (67.57%), Postives = 180/222 (81.08%), Query Frame = 0


Query: 1   MESCRSSF---SLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGR 60
           M + ++SF   +L S       ++   R +G VHVI+GPMF+GK+T+LLRRIKSE + GR
Sbjct: 1   MATLKASFLIKTLDSDVTGDFLSDLERRGSGAVHVIMGPMFSGKSTSLLRRIKSEISDGR 60

Query: 61  NVVMIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFF 120
           +V M+KSSKDTRYA DSVVTHDG  FPCWALPDL  F +KFG DAYN+LDVIG+DEAQFF
Sbjct: 61  SVAMLKSSKDTRYAKDSVVTHDGIGFPCWALPDLMSFPEKFGLDAYNKLDVIGIDEAQFF 120

Query: 121 DDLYDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAF 180
            DLY+FCC VAD DGKI++VAGLDGDYLRRSFG+VLD+IP+AD+VTKLTARCE+CG +AF
Sbjct: 121 GDLYEFCCKVADDDGKIVIVAGLDGDYLRRSFGAVLDIIPIADSVTKLTARCEVCGHKAF 180

Query: 181 FTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVM 220
           FTLRK  +TRTELI GADVYMPVCR HY     VI++SK V+
Sbjct: 181 FTLRKNCDTRTELIGGADVYMPVCRKHYITNHIVIKASKKVL 222

[Close]

BLAST of Clc02G09460 vs. ExPASy Swiss-Prot
Match: F4KBF5 (Thymidine kinase b OS=Arabidopsis thaliana OX=3702 GN=TK1B PE=1 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-77
Identity = 134/213 (62.91%), Postives = 174/213 (81.69%), Query Frame = 0


Query: 10  LTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTR 69
           +TSS+ +   + SS    GE+HV++GPMF+GKTT LLRRI +E  +G+ + +IKS+KDTR
Sbjct: 62  VTSSSSSQPLSSSS---PGEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTR 121

Query: 70  YAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAY-NELDVIGVDEAQFFDDLYDFCCNVA 129
           Y  +S+VTHDG K+PCW+LPDLS F+++FG D Y N LDVIG+DEAQFF DLY+FC   A
Sbjct: 122 YCTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAA 181

Query: 130 DKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTLRKTEETRT 189
           DK+GK ++VAGLDGD++RR FGSVLD+IP+ADTVTKLT+RCE+CGKRA FT+RKTEE  T
Sbjct: 182 DKEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRKTEEKET 241

Query: 190 ELIAGADVYMPVCRHHYANGQEVIQSSKNVMGS 222
           ELI GA+VYMPVCR HY  GQ V+++++ V+ S
Sbjct: 242 ELIGGAEVYMPVCRSHYVCGQNVLETARAVLDS 271

[Close]

BLAST of Clc02G09460 vs. ExPASy Swiss-Prot
Match: P23335 (Thymidine kinase OS=Swinepox virus (strain Kasza) OX=10277 GN=TK PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.5e-36
Identity = 80/178 (44.94%), Postives = 117/178 (65.73%), Query Frame = 0


Query: 28  GEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRYAIDSVVTHDGAKFPCWA 87
           G +H+I+GPMF+GK+T L+R +     +  N  +IK SKD RY  D+V THD  K    A
Sbjct: 4   GFIHLILGPMFSGKSTELIRLVNRYQIATYNCRVIKYSKDNRYGNDAVYTHD--KCYISA 63

Query: 88  LPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADKDGKIIVVAGLDGDYLRR 147
           +   S F  K   D  +++D++G+DE QFF+D+ +FC  +A+K GKI++VA LDG Y R+
Sbjct: 64  VSTDSLFDIK---DTLDDVDIVGIDEGQFFNDIVEFCEYIANK-GKIVIVAALDGTYERK 123

Query: 148 SFGSVLDVIPLADTVTKLTARCEICGKRAFFTLRKTEETRTELIAGADVYMPVCRHHY 206
            FG++L++IPL++ VTKL A C IC + A F+ R ++E   ELI G + Y+ VCR  Y
Sbjct: 124 PFGNILNLIPLSEKVTKLNAICMICHRDASFSKRLSDEKEIELIGGKEKYLSVCRSCY 175

[Close]

BLAST of Clc02G09460 vs. ExPASy Swiss-Prot
Match: Q27564 (Thymidine kinase 1 OS=Dictyostelium discoideum OX=44689 GN=thyB PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 87/199 (43.72%), Postives = 121/199 (60.80%), Query Frame = 0


Query: 25  RLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTRY--AIDS--VVTHDG 84
           ++AG++ VI GPMF+GKTT L+RRIK  + + +  ++IK SKDTRY   ID   +VTHD 
Sbjct: 5   QIAGKIQVIFGPMFSGKTTELIRRIKRFNFANKKCLLIKYSKDTRYNDNIDKSFLVTHDK 64

Query: 85  AK---FPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDLYDFCCNVADKDGKIIVV 144
                FPC  L D+        E A N  DVIG+DE QFF D+  F  ++A++ GK +++
Sbjct: 65  QNYQAFPCSILEDVK-------EQAQN-YDVIGIDEGQFFPDVVQFSEDLANQ-GKTVII 124

Query: 145 AGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTLRKTEETRTELIAGADVY 204
           A LDG + R+ F SV+D++  A+ +TKLTA C +C   A F+ R  E    ELI G D Y
Sbjct: 125 AALDGTFQRKPFQSVIDLVSKAEYITKLTAVCMVCYNEAAFSKRIVESDDIELIGGIDKY 184

Query: 205 MPVCRHHYANGQEVIQSSK 217
           + VCR  Y + Q    S+K
Sbjct: 185 ISVCRGCYNSDQNEGNSTK 194

[Close]

BLAST of Clc02G09460 vs. ExPASy TrEMBL
Match: A0A5D3CJB6 (Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00640 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.6e-116
Identity = 214/236 (90.68%), Postives = 221/236 (93.64%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MESCRSS SLTSSN  A+R ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSGRNVV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDGAKFPCWALP LS FR+KFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCCNVAD+DGKIIVVAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEET+TELIAGADVYMPVCRHHYA GQEVIQSSKNVMGS TI   SNLEA  SL
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTI--ASNLEALPSL 234

[Close]

BLAST of Clc02G09460 vs. ExPASy TrEMBL
Match: A0A1S3CKW8 (Thymidine kinase OS=Cucumis melo OX=3656 GN=LOC103502126 PE=3 SV=1)

HSP 1 Score: 427.2 bits (1097), Expect = 4.6e-116
Identity = 214/236 (90.68%), Postives = 221/236 (93.64%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MESCRSS SLTSSN  A+R ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSGRNVV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYA+DSVVTHDGAKFPCWALP LS FR+KFGEDAYNELDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCCNVAD+DGKIIVVAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEET+TELIAGADVYMPVCRHHYA GQEVIQSSKNVMGS TI   SNLEA  SL
Sbjct: 181 RKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTI--ASNLEALPSL 234

[Close]

BLAST of Clc02G09460 vs. ExPASy TrEMBL
Match: A0A6J1FYC7 (Thymidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111448484 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.1e-115
Identity = 208/236 (88.14%), Postives = 223/236 (94.49%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           MES R+SFSL S++G AV A S HR+AGEVHVIIGPMFAGKTTALLRRIK+ES+SGRNVV
Sbjct: 1   MESLRNSFSLISTDGGAVSAGSPHRVAGEVHVIIGPMFAGKTTALLRRIKAESSSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLS FR+KFGEDAYN+LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYNKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCC+VADKD KII+VAGLDGDYLRR FGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCDVADKDSKIIIVAGLDGDYLRRRFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKN++GS  +RTGSNLEA  SL
Sbjct: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNILGSRALRTGSNLEALPSL 236

[Close]

BLAST of Clc02G09460 vs. ExPASy TrEMBL
Match: A0A6J1CH59 (Thymidine kinase OS=Momordica charantia OX=3673 GN=LOC111011151 PE=3 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 6.6e-115
Identity = 208/237 (87.76%), Postives = 224/237 (94.51%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60
           M+S RSS SLT+++G  VRA S  R+AGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV
Sbjct: 1   MDSFRSSLSLTTTDGGTVRAGSYPRVAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVV 60

Query: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDDL 120
           MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLS FR+KFGEDAY++LDVIGVDEAQFFDDL
Sbjct: 61  MIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSSFRQKFGEDAYDKLDVIGVDEAQFFDDL 120

Query: 121 YDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTL 180
           YDFCCNVADKDGKI++VAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCE+CGKRAFFTL
Sbjct: 121 YDFCCNVADKDGKIVIVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFTL 180

Query: 181 RKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSLN 238
           RKTEETRTELIAGADVYMPVCR HYANGQ+VIQ+SKNV+GS T+ TGSNLEA  SLN
Sbjct: 181 RKTEETRTELIAGADVYMPVCRQHYANGQQVIQASKNVLGSRTVTTGSNLEALASLN 237

[Close]

BLAST of Clc02G09460 vs. ExPASy TrEMBL
Match: A0A5A7TX27 (Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005900 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.5e-114
Identity = 214/237 (90.30%), Postives = 221/237 (93.25%), Query Frame = 0


Query: 1   MESCRSSFSLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSG-RNV 60
           MESCRSS SLTSSN  A+R ESSHRL GEVHVIIGPMFAGKTTALLRRIKS SNSG RNV
Sbjct: 1   MESCRSSLSLTSSNADAIRPESSHRLTGEVHVIIGPMFAGKTTALLRRIKSASNSGNRNV 60

Query: 61  VMIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFFDD 120
           VMIKSSKDTRYA+DSVVTHDGAKFPCWALP LS FR+KFGEDAYNELDVIGVDEAQFFDD
Sbjct: 61  VMIKSSKDTRYAVDSVVTHDGAKFPCWALPHLSSFRQKFGEDAYNELDVIGVDEAQFFDD 120

Query: 121 LYDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFT 180
           LYDFCCNVAD+DGKIIVVAGLDGDYLRRSFGSVLDV+PLADTVTKLTARCE+CGKRAFFT
Sbjct: 121 LYDFCCNVADRDGKIIVVAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAFFT 180

Query: 181 LRKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVMGSPTIRTGSNLEARTSL 237
           LRKTEET+TELIAGADVYMPVCRHHYA GQEVIQSSKNVMGS TI   SNLEA  SL
Sbjct: 181 LRKTEETKTELIAGADVYMPVCRHHYATGQEVIQSSKNVMGSRTIT--SNLEALPSL 235

[Close]

BLAST of Clc02G09460 vs. TAIR 10
Match: AT3G07800.1 (Thymidine kinase )

HSP 1 Score: 308.1 bits (788), Expect = 6.0e-84
Identity = 150/222 (67.57%), Postives = 180/222 (81.08%), Query Frame = 0


Query: 1   MESCRSSF---SLTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGR 60
           M + ++SF   +L S       ++   R +G VHVI+GPMF+GK+T+LLRRIKSE + GR
Sbjct: 1   MATLKASFLIKTLDSDVTGDFLSDLERRGSGAVHVIMGPMFSGKSTSLLRRIKSEISDGR 60

Query: 61  NVVMIKSSKDTRYAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAYNELDVIGVDEAQFF 120
           +V M+KSSKDTRYA DSVVTHDG  FPCWALPDL  F +KFG DAYN+LDVIG+DEAQFF
Sbjct: 61  SVAMLKSSKDTRYAKDSVVTHDGIGFPCWALPDLMSFPEKFGLDAYNKLDVIGIDEAQFF 120

Query: 121 DDLYDFCCNVADKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAF 180
            DLY+FCC VAD DGKI++VAGLDGDYLRRSFG+VLD+IP+AD+VTKLTARCE+CG +AF
Sbjct: 121 GDLYEFCCKVADDDGKIVIVAGLDGDYLRRSFGAVLDIIPIADSVTKLTARCEVCGHKAF 180

Query: 181 FTLRKTEETRTELIAGADVYMPVCRHHYANGQEVIQSSKNVM 220
           FTLRK  +TRTELI GADVYMPVCR HY     VI++SK V+
Sbjct: 181 FTLRKNCDTRTELIGGADVYMPVCRKHYITNHIVIKASKKVL 222

[Close]

BLAST of Clc02G09460 vs. TAIR 10
Match: AT5G23070.1 (Thymidine kinase )

HSP 1 Score: 291.2 bits (744), Expect = 7.5e-79
Identity = 134/213 (62.91%), Postives = 174/213 (81.69%), Query Frame = 0


Query: 10  LTSSNGAAVRAESSHRLAGEVHVIIGPMFAGKTTALLRRIKSESNSGRNVVMIKSSKDTR 69
           +TSS+ +   + SS    GE+HV++GPMF+GKTT LLRRI +E  +G+ + +IKS+KDTR
Sbjct: 62  VTSSSSSQPLSSSS---PGEIHVVVGPMFSGKTTTLLRRILAERETGKRIAIIKSNKDTR 121

Query: 70  YAIDSVVTHDGAKFPCWALPDLSCFRKKFGEDAY-NELDVIGVDEAQFFDDLYDFCCNVA 129
           Y  +S+VTHDG K+PCW+LPDLS F+++FG D Y N LDVIG+DEAQFF DLY+FC   A
Sbjct: 122 YCTESIVTHDGEKYPCWSLPDLSSFKERFGFDDYENRLDVIGIDEAQFFGDLYEFCREAA 181

Query: 130 DKDGKIIVVAGLDGDYLRRSFGSVLDVIPLADTVTKLTARCEICGKRAFFTLRKTEETRT 189
           DK+GK ++VAGLDGD++RR FGSVLD+IP+ADTVTKLT+RCE+CGKRA FT+RKTEE  T
Sbjct: 182 DKEGKTVIVAGLDGDFMRRRFGSVLDLIPIADTVTKLTSRCEVCGKRALFTMRKTEEKET 241

Query: 190 ELIAGADVYMPVCRHHYANGQEVIQSSKNVMGS 222
           ELI GA+VYMPVCR HY  GQ V+++++ V+ S
Sbjct: 242 ELIGGAEVYMPVCRSHYVCGQNVLETARAVLDS 271

The following BLAST results are available for this feature:

BLAST of Clc02G09460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901065.1	5.7e-121	94.49	thymidine kinase isoform X1 [Benincasa hispida]	[more]
XP_038901066.1	6.3e-120	95.24	thymidine kinase isoform X2 [Benincasa hispida]	[more]
XP_023513380.1	4.2e-116	88.98	thymidine kinase a [Cucurbita pepo subsp. pepo]	[more]
XP_008464186.1	9.4e-116	90.68	PREDICTED: thymidine kinase [Cucumis melo] >TYK11901.1 thymidine kinase [Cucumis...	[more]
KAG7010772.1	2.7e-115	88.56	Thymidine kinase a [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Clc02G09460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81263	1.7e-83	69.90	Thymidine kinase OS=Oryza sativa subsp. japonica OX=39947 GN=TK PE=2 SV=2	[more]
Q9S750	8.4e-83	67.57	Thymidine kinase a OS=Arabidopsis thaliana OX=3702 GN=TK1A PE=1 SV=1	[more]
F4KBF5	1.1e-77	62.91	Thymidine kinase b OS=Arabidopsis thaliana OX=3702 GN=TK1B PE=1 SV=1	[more]
P23335	4.5e-36	44.94	Thymidine kinase OS=Swinepox virus (strain Kasza) OX=10277 GN=TK PE=3 SV=1	[more]
Q27564	3.2e-34	43.72	Thymidine kinase 1 OS=Dictyostelium discoideum OX=44689 GN=thyB PE=1 SV=1	[more]

BLAST of Clc02G09460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJB6	4.6e-116	90.68	Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G006...	[more]
A0A1S3CKW8	4.6e-116	90.68	Thymidine kinase OS=Cucumis melo OX=3656 GN=LOC103502126 PE=3 SV=1	[more]
A0A6J1FYC7	5.1e-115	88.14	Thymidine kinase OS=Cucurbita moschata OX=3662 GN=LOC111448484 PE=3 SV=1	[more]
A0A6J1CH59	6.6e-115	87.76	Thymidine kinase OS=Momordica charantia OX=3673 GN=LOC111011151 PE=3 SV=1	[more]
A0A5A7TX27	1.5e-114	90.30	Thymidine kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005...	[more]

BLAST of Clc02G09460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07800.1	6.0e-84	67.57	Thymidine kinase	[more]
AT5G23070.1	7.5e-79	62.91	Thymidine kinase	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001267	Thymidine kinase	PFAM	PF00265	TK	coord: 28..205 e-value: 2.6E-52 score: 177.3
IPR001267	Thymidine kinase	PANTHER	PTHR11441	THYMIDINE KINASE	coord: 5..226
None	No IPR available	GENE3D	3.30.60.20		coord: 166..207 e-value: 1.3E-15 score: 59.4
None	No IPR available	PANTHER	PTHR11441:SF8	THYMIDINE KINASE B	coord: 5..226
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 166..208
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 22..165 e-value: 2.6E-45 score: 155.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 28..166
IPR020633	Thymidine kinase, conserved site	PROSITE	PS00603	TK_CELLULAR_TYPE	coord: 192..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09460.1	Clc02G09460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009157	deoxyribonucleoside monophosphate biosynthetic process
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0046104	thymidine metabolic process
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004797	thymidine kinase activity