Clc02G09300 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G09300
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr02: 12540364 .. 12541367 (-)
RNA-Seq ExpressionClc02G09300
SyntenyClc02G09300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCCAAATTCCCTCTTTCTTCTTCTCTTACCATCAAATTTCCTATCCAACAAAACCCATCTTCCTTCCTCCCTCCTCTTCCTTCCCCATTCTCATCACCAAAGCCAAGGCCGACCGCTTCTCGCTTCAAGCTTCTTGCAAATTTAGGTAAAAGGGCTTTCACTTTTGCTTGGATCTGCAACTCACTCTTGTTTATATACTGATAGGTTTTGAAATGGTGGTGATGCCTTTTTTTCTTCAGGTGGTGGAGATGCAGAAACCAAGAAGGGAGGGAAGAAAAAGTTTATAACTAAGGAAGAAGAGCCAGAGCAGTAAACAATTCTTTCCCTTTTCTGTTTTCCTTTTTCTGGTATCAGAATGTCATCAGTTTGAGTTGATATACAAGAAGATATCATCAAACACCAAGCTGGAAATCTGATTGAATTTGGTGCAGGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAGAATCCTATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACTCCATTTGTGATCTTAGCCATAGCCTTTGCCAATGGCTGGGTTAAGGTTCCTGTGAGATGAATCTGATCGAAGTCATTGTGCAAATGCCAAGGGAACAACACCATTACAGTAATCTGAGATCTTTCTTCTACAGCCCACAAAACCCACTGTTTATGCCTGTTTTGAGTTGTAATGTTATTCCAGAAGCTAATACAAAAAAAGTATAGTAACTCGGTTCATTTTCGCTGTTTTGAGTTTGGGATTCTTTTTCCCTCCATTTCAATACAAGAATTTGTTGTTGGTATCTTTGAGTAATATGTCGGAATCACAAACAGATGCAAATAAAATAATAATAACAAGCCAGGAAAATGCATAAAAAAAACTGACTACAACTGCTGACAACTTAAACATAGCTTAGCGGTTAAGACGTCTATCATTTTCTTTAGATCGGAGGTTCGAACCCCACCTCACCCCTGCTGTCTTGTGGTTCTGTGGCAATTTGA

mRNA sequence

ATGGCCGCCAAATTCCCTCTTTCTTCTTCTCTTACCATCAAATTTCCTATCCAACAAAACCCATCTTCCTTCCTCCCTCCTCTTCCTTCCCCATTCTCATCACCAAAGCCAAGGCCGACCGCTTCTCGCTTCAAGCTTCTTGCAAATTTAGGTGGTGGAGATGCAGAAACCAAGAAGGGAGGGAAGAAAAAGTTTATAACTAAGGAAGAAGAGCCAGAGCAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAGAATCCTATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACTCCATTTGTGATCTTAGCCATAGCCTTTGCCAATGGCTGGGTTAAGGTTCCTATCGGAGGTTCGAACCCCACCTCACCCCTGCTGTCTTGTGGTTCTGTGGCAATTTGA

Coding sequence (CDS)

ATGGCCGCCAAATTCCCTCTTTCTTCTTCTCTTACCATCAAATTTCCTATCCAACAAAACCCATCTTCCTTCCTCCCTCCTCTTCCTTCCCCATTCTCATCACCAAAGCCAAGGCCGACCGCTTCTCGCTTCAAGCTTCTTGCAAATTTAGGTGGTGGAGATGCAGAAACCAAGAAGGGAGGGAAGAAAAAGTTTATAACTAAGGAAGAAGAGCCAGAGCAGTATTGGCAGACAGCAGGGGAGAGGGAAGGGGAGAATCCTATGAAGACTCCTCTTCCTTATATCATCATCTTTGGCATGTCGACTCCATTTGTGATCTTAGCCATAGCCTTTGCCAATGGCTGGGTTAAGGTTCCTATCGGAGGTTCGAACCCCACCTCACCCCTGCTGTCTTGTGGTTCTGTGGCAATTTGA

Protein sequence

MAAKFPLSSSLTIKFPIQQNPSSFLPPLPSPFSSPKPRPTASRFKLLANLGGGDAETKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPIGGSNPTSPLLSCGSVAI
Homology
[Close]
BLAST of Clc02G09300 vs. NCBI nr
Match: XP_004140001.1 (uncharacterized protein LOC101219556 [Cucumis sativus] >KGN46605.1 hypothetical protein Csa_005653 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 5.9e-54
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNP-SSFLPPLPSPFSSPKPRPT-ASRFKLLANLGGGDAETK 60
           MAAKFPLSSSLTIKFP+QQNP SSF PPLPSPFSSPK RPT +SRFKLLANLGGGDAE K
Sbjct: 1   MAAKFPLSSSLTIKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 60

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120

[Close]
BLAST of Clc02G09300 vs. NCBI nr
Match: XP_008464165.1 (PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo] >KAA0060798.1 uncharacterized protein E6C27_scaffold137G00170 [Cucumis melo var. makuwa] >TYK11961.1 uncharacterized protein E5676_scaffold177G001450 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 7.8e-54
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNP-SSFLPPLPSPFSSPKPRPT-ASRFKLLANLGGGDAETK 60
           MAAKFPLSSSLT+KFP+QQNP SSF PPLPSPFSSPK RPT +SRFKLLANLGGGDAE K
Sbjct: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 104

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 105 KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 164

[Close]
BLAST of Clc02G09300 vs. NCBI nr
Match: XP_038902667.1 (uncharacterized protein LOC120089303 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.3e-52
Identity = 107/120 (89.17%), Postives = 110/120 (91.67%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNPSSFLPPLPSPFSSPKPRPTASRFKLLANLGGGDAETKKG 60
           MA K PLSSSLTIKFP+QQ+PSSF  PLP PFS PKPRP  SRFKLLANLGGGDAE KKG
Sbjct: 1   MAVKVPLSSSLTIKFPLQQSPSSFFSPLPCPFSLPKPRPMPSRFKLLANLGGGDAEIKKG 60

Query: 61  GKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPI 120
            KKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVP+
Sbjct: 61  AKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKVPV 120

[Close]
BLAST of Clc02G09300 vs. NCBI nr
Match: XP_022971133.1 (uncharacterized protein LOC111469898 [Cucurbita maxima])

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-51
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0 

Query: 1   MAAKFPLSSSL-TIKFPIQQNPSSFLPPLP-SPFSSPKPRPTASRFKLLANLGGGDAETK 60
           MAAKFPLSSSL TIKFP+QQNPS F PPLP + FS PKP+P AS+FKLLAN GGGDAE K
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFPPLPCTTFSPPKPKPRASQFKLLANSGGGDAEVK 60

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120

[Close]
BLAST of Clc02G09300 vs. NCBI nr
Match: XP_022140463.1 (uncharacterized protein LOC111011130 [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNPSSFLPPLPSPFSSPKPRP--TASRFKLLANLGGGDAETK 60
           MAAKF LSSSLTIKFP+QQNPSSF  PLPS  SSP P+P   ASRFKL+ANLGGGDAE K
Sbjct: 1   MAAKFALSSSLTIKFPLQQNPSSFFAPLPSGLSSPNPKPKSRASRFKLVANLGGGDAEIK 60

Query: 61  K-GGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVK 120
           K GGKKKFITKEEEPEQYWQ+AGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVK
Sbjct: 61  KGGGKKKFITKEEEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVK 120

[Close]
BLAST of Clc02G09300 vs. ExPASy TrEMBL
Match: A0A0A0KA68 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54
Identity = 114/122 (93.44%), Postives = 117/122 (95.90%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNP-SSFLPPLPSPFSSPKPRPT-ASRFKLLANLGGGDAETK 60
           MAAKFPLSSSLTIKFP+QQNP SSF PPLPSPFSSPK RPT +SRFKLLANLGGGDAE K
Sbjct: 1   MAAKFPLSSSLTIKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 60

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120

[Close]
BLAST of Clc02G09300 vs. ExPASy TrEMBL
Match: A0A5D3CJG8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001450 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.8e-54
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNP-SSFLPPLPSPFSSPKPRPT-ASRFKLLANLGGGDAETK 60
           MAAKFPLSSSLT+KFP+QQNP SSF PPLPSPFSSPK RPT +SRFKLLANLGGGDAE K
Sbjct: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 104

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 105 KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 164

[Close]
BLAST of Clc02G09300 vs. ExPASy TrEMBL
Match: A0A1S3CKW7 (uncharacterized protein LOC103502113 OS=Cucumis melo OX=3656 GN=LOC103502113 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.8e-54
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNP-SSFLPPLPSPFSSPKPRPT-ASRFKLLANLGGGDAETK 60
           MAAKFPLSSSLT+KFP+QQNP SSF PPLPSPFSSPK RPT +SRFKLLANLGGGDAE K
Sbjct: 45  MAAKFPLSSSLTVKFPLQQNPSSSFFPPLPSPFSSPKLRPTPSSRFKLLANLGGGDAEIK 104

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 105 KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 164

[Close]
BLAST of Clc02G09300 vs. ExPASy TrEMBL
Match: A0A6J1I5Y3 (uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.0e-51
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0 

Query: 1   MAAKFPLSSSL-TIKFPIQQNPSSFLPPLP-SPFSSPKPRPTASRFKLLANLGGGDAETK 60
           MAAKFPLSSSL TIKFP+QQNPS F PPLP + FS PKP+P AS+FKLLAN GGGDAE K
Sbjct: 1   MAAKFPLSSSLTTIKFPLQQNPSPFFPPLPCTTFSPPKPKPRASQFKLLANSGGGDAEVK 60

Query: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120
           KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV
Sbjct: 61  KGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVKV 120

[Close]
BLAST of Clc02G09300 vs. ExPASy TrEMBL
Match: A0A6J1CI22 (uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011130 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.2e-49
Identity = 107/123 (86.99%), Postives = 112/123 (91.06%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNPSSFLPPLPSPFSSPKPRP--TASRFKLLANLGGGDAETK 60
           MAAKF LSSSLTIKFP+QQNPSSF  PLPS  SSP P+P   ASRFKL+ANLGGGDAE K
Sbjct: 1   MAAKFALSSSLTIKFPLQQNPSSFFAPLPSGLSSPNPKPKSRASRFKLVANLGGGDAEIK 60

Query: 61  K-GGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVK 120
           K GGKKKFITKEEEPEQYWQ+AGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVK
Sbjct: 61  KGGGKKKFITKEEEPEQYWQSAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGWVK 120

[Close]
BLAST of Clc02G09300 vs. TAIR 10
Match: AT4G13500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G05310.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 142.5 bits (358), Expect = 2.5e-34
Identity = 83/125 (66.40%), Postives = 87/125 (69.60%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNPS-----SFLPPLPSPFSSPKPRPTASRFKLLANLGGGDA 60
           MAAKF +SSS         + S     S L  LP  F  P P      FKL A LGGGD 
Sbjct: 1   MAAKFRISSSSFSHRASDSSTSSSSSYSSLLALPQFFCPPSPL-GFPEFKLHAKLGGGDG 60

Query: 61  ETKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 120
           E K   KKKFITKEEEPEQYWQ+ GEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW
Sbjct: 61  EVKPKDKKKFITKEEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFANGW 120

[Close]
BLAST of Clc02G09300 vs. TAIR 10
Match: AT2G05310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G13500.1); Has 50 Blast hits to 50 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 138.3 bits (347), Expect = 4.7e-33
Identity = 82/128 (64.06%), Postives = 88/128 (68.75%), Query Frame = 0 

Query: 1   MAAKFPLSSSLTIKFPIQQNPS--------SFLPPLPSPFSSPKPRPTASRFKLLANLGG 60
           MAAK  + SS    F  + N S        S L  LP  F  P P     +FKL A LGG
Sbjct: 1   MAAKLCIPSS---SFSHRTNDSITSSSSSYSSLLALPQFFCPPSPL-GFPQFKLHAKLGG 60

Query: 61  GDAETKKGGKKKFITKEEEPEQYWQTAGEREGENPMKTPLPYIIIFGMSTPFVILAIAFA 120
           GD E K   KKKFITK+EEPEQYWQ+ GEREGENPMKTPLPYIIIFGMSTPFVILAIAFA
Sbjct: 61  GDGEVKPKDKKKFITKDEEPEQYWQSVGEREGENPMKTPLPYIIIFGMSTPFVILAIAFA 120

The following BLAST results are available for this feature:
BLAST of Clc02G09300 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140001.15.9e-5493.44uncharacterized protein LOC101219556 [Cucumis sativus] >KGN46605.1 hypothetical ... [more]
XP_008464165.17.8e-5492.62PREDICTED: uncharacterized protein LOC103502113 [Cucumis melo] >KAA0060798.1 unc... [more]
XP_038902667.13.3e-5289.17uncharacterized protein LOC120089303 [Benincasa hispida][more]
XP_022971133.16.1e-5188.52uncharacterized protein LOC111469898 [Cucurbita maxima][more]
XP_022140463.12.6e-4986.99uncharacterized protein LOC111011130 [Momordica charantia][more]
BLAST of Clc02G09300 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc02G09300 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KA682.9e-5493.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112440 PE=4 SV=1[more]
A0A5D3CJG83.8e-5492.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CKW73.8e-5492.62uncharacterized protein LOC103502113 OS=Cucumis melo OX=3656 GN=LOC103502113 PE=... [more]
A0A6J1I5Y33.0e-5188.52uncharacterized protein LOC111469898 OS=Cucurbita maxima OX=3661 GN=LOC111469898... [more]
A0A6J1CI221.2e-4986.99uncharacterized protein LOC111011130 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
BLAST of Clc02G09300 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G13500.12.5e-3466.40unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT2G05310.14.7e-3364.06unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..78
NoneNo IPR availablePANTHERPTHR36343EXPRESSED PROTEINcoord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G09300.2Clc02G09300.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane