Clc02G09280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Nuclear transcription factor Y subunit B-3
Location	ClcChr02: 12495582 .. 12496103 (-)
RNA-Seq Expression	Clc02G09280
Synteny	Clc02G09280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATGCTCTATTTTTCAATCTCCAAAAGAAATTCACTTCCTGTACAGAAATTTGTACAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAACTGAACTTTCTTTCTGATCAATTGAAATTCTCGTCGGCGTCAGGTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCAGATGATAATTTCACGACCACAGAGGAATCCGAAGTGGAGTGGCCGTATTTTGACCGCCGGTCGTATACAGCGAAAAACACGGACCGGTCTGATGACGGTTCGATTTCCGATGAGGAAAGTTTGATCGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTTCGATGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATATTCAGATGAAGAAGAATCTTGTGGAGGTGTTGGCTGAAATGAACGACATCAATGAGGAGGAGAATTTGATTGAGATCGACATATCGATGGGCTCCATTAAATATTCAAGGTTTGAAATTGAAGCTTGA

mRNA sequence

ATGTCTATGCTCTATTTTTCAATCTCCAAAAGAAATTCACTTCCTGTACAGAAATTTGTACAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAACTGAACTTTCTTTCTGATCAATTGAAATTCTCGTCGGCGTCAGGTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCAGATGATAATTTCACGACCACAGAGGAATCCGAAGTGGAGTGGCCGTATTTTGACCGCCGGTCGTATACAGCGAAAAACACGGACCGGTCTGATGACGGTTCGATTTCCGATGAGGAAAGTTTGATCGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTTCGATGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATATTCAGATGAAGAAGAATCTTGTGGAGGTGTTGGCTGAAATGAACGACATCAATGAGGAGGAGAATTTGATTGAGATCGACATATCGATGGGCTCCATTAAATATTCAAGGTTTGAAATTGAAGCTTGA

Coding sequence (CDS)

ATGTCTATGCTCTATTTTTCAATCTCCAAAAGAAATTCACTTCCTGTACAGAAATTTGTACAAGAAGAAGAAGAAGAAGAAGAAGATCAGAAAGAACTGAACTTTCTTTCTGATCAATTGAAATTCTCGTCGGCGTCAGGTCCGACGACCGGAGATTTGCTGTCGGAAAGTGAATGTGCAGATGATAATTTCACGACCACAGAGGAATCCGAAGTGGAGTGGCCGTATTTTGACCGCCGGTCGTATACAGCGAAAAACACGGACCGGTCTGATGACGGTTCGATTTCCGATGAGGAAAGTTTGATCGAAATCGCTCTCCCGACCGGACATTACGTCAGCCATAAGTTCGATGACGAGGACGACATGTCGTTTCGTTTCCAGAAACTGTCGGATATTCAGATGAAGAAGAATCTTGTGGAGGTGTTGGCTGAAATGAACGACATCAATGAGGAGGAGAATTTGATTGAGATCGACATATCGATGGGCTCCATTAAATATTCAAGGTTTGAAATTGAAGCTTGA

Protein sequence

MSMLYFSISKRNSLPVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA

Homology

[Close]

BLAST of Clc02G09280 vs. NCBI nr
Match: XP_038902685.1 (uncharacterized protein LOC120089322 [Benincasa hispida])

HSP 1 Score: 281.2 bits (718), Expect = 6.1e-72
Identity = 154/180 (85.56%), Postives = 159/180 (88.33%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQ--EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESE 60
           MSMLYFSISKRNSLP+QKFVQ  +EEEEEEDQK+L F SD LK SS S PTTGDLLSESE
Sbjct: 44  MSMLYFSISKRNSLPIQKFVQQVQEEEEEEDQKKLTFFSDHLKSSSVSAPTTGDLLSESE 103

Query: 61  CADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD- 120
           CADDNFTTTEESEVEWPYFD RSY   N DRSDDGSISDEESLIEIALPTGHYVSHKFD 
Sbjct: 104 CADDNFTTTEESEVEWPYFDHRSYKPNNPDRSDDGSISDEESLIEIALPTGHYVSHKFDD 163

Query: 121 ----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
               DED MSFR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 164 VDDEDEDGMSFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 222

[Close]

BLAST of Clc02G09280 vs. NCBI nr
Match: TYK11971.1 (uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 4.8e-69
Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESEC 60
           MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESEC
Sbjct: 1   MSMLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESEC 60

Query: 61  ADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD-- 120
           ADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYVS KFD  
Sbjct: 61  ADDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDV 120

Query: 121 ----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
               DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 121 DEDEDEDDTPFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 179

[Close]

BLAST of Clc02G09280 vs. NCBI nr
Match: XP_008464163.1 (PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 4.8e-69
Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESEC 60
           MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESEC
Sbjct: 54  MSMLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESEC 113

Query: 61  ADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD-- 120
           ADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYVS KFD  
Sbjct: 114 ADDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDV 173

Query: 121 ----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
               DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 174 DEDEDEDDTPFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 232

[Close]

BLAST of Clc02G09280 vs. NCBI nr
Match: KAA0060802.1 (uncharacterized protein E6C27_scaffold137G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 268.9 bits (686), Expect = 3.1e-68
Identity = 151/187 (80.75%), Postives = 157/187 (83.96%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQ--------EEEEEEEDQKELNFLSDQLKFSSASGPTTGD 60
           MSMLYFSISKR+SLP+QKFVQ        EEEEEEEDQKEL F SD LK SSAS PTT D
Sbjct: 1   MSMLYFSISKRSSLPIQKFVQEQEEEEEEEEEEEEEDQKELTFFSDHLKSSSASAPTTRD 60

Query: 61  LLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYV 120
           LLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYV
Sbjct: 61  LLSESECADDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYV 120

Query: 121 SHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKY 174
           S KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKY
Sbjct: 121 SRKFDDVDEDEDEDDTPFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKY 180

[Close]

BLAST of Clc02G09280 vs. NCBI nr
Match: XP_011656887.2 (uncharacterized protein LOC105435780 [Cucumis sativus] >KAE8646805.1 hypothetical protein Csa_005290 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 2.0e-67
Identity = 147/179 (82.12%), Postives = 156/179 (87.15%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQ--EEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESE 60
           MSMLYFSISKRNSLP++KFVQ  EEEEEEEDQK+L F SD LK SSAS PT  DLLSESE
Sbjct: 54  MSMLYFSISKRNSLPIRKFVQEEEEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESE 113

Query: 61  CADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD- 120
           CADDNFTTTEESEVEWPYFD R    +N  RSDDGSISDEESLIEIALPTGHYVS KFD 
Sbjct: 114 CADDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDD 173

Query: 121 ---DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
              DEDD+SFR+QKL+D Q +KNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 174 VDEDEDDISFRYQKLTDFQ-RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 231

[Close]

BLAST of Clc02G09280 vs. ExPASy TrEMBL
Match: A0A5D3CJH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001550 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-69
Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESEC 60
           MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESEC
Sbjct: 1   MSMLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESEC 60

Query: 61  ADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD-- 120
           ADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYVS KFD  
Sbjct: 61  ADDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDV 120

Query: 121 ----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
               DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 121 DEDEDEDDTPFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 179

[Close]

BLAST of Clc02G09280 vs. ExPASy TrEMBL
Match: A0A1S3CMD0 (uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.3e-69
Identity = 151/180 (83.89%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQE-EEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESEC 60
           MSMLYFSISKR+SLP+QKFVQE EEEEEEDQKEL F SD LK SSAS PTT DLLSESEC
Sbjct: 54  MSMLYFSISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESEC 113

Query: 61  ADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD-- 120
           ADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYVS KFD  
Sbjct: 114 ADDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDV 173

Query: 121 ----DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
               DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 174 DEDEDEDDTPFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 232

[Close]

BLAST of Clc02G09280 vs. ExPASy TrEMBL
Match: A0A5A7UY43 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00220 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.5e-68
Identity = 151/187 (80.75%), Postives = 157/187 (83.96%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQ--------EEEEEEEDQKELNFLSDQLKFSSASGPTTGD 60
           MSMLYFSISKR+SLP+QKFVQ        EEEEEEEDQKEL F SD LK SSAS PTT D
Sbjct: 1   MSMLYFSISKRSSLPIQKFVQEQEEEEEEEEEEEEEDQKELTFFSDHLKSSSASAPTTRD 60

Query: 61  LLSESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYV 120
           LLSESECADDNFTTTEESEVEWPYFD R Y A++  RSDDGSISDEESLIEIALPTGHYV
Sbjct: 61  LLSESECADDNFTTTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYV 120

Query: 121 SHKFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKY 174
           S KFD      DEDD  FR+QKLSD Q KKNLVEVLAE+NDINEEENLIEIDISMGSIKY
Sbjct: 121 SRKFDDVDEDEDEDDTPFRYQKLSDFQ-KKNLVEVLAEINDINEEENLIEIDISMGSIKY 180

[Close]

BLAST of Clc02G09280 vs. ExPASy TrEMBL
Match: A0A0A0KCP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.2e-67
Identity = 146/177 (82.49%), Postives = 155/177 (87.57%), Query Frame = 0


Query: 1   MSMLYFSISKRNSLPVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLLSESECA 60
           MSMLYFSISKRNSLP++KFVQ EEEEEEDQK+L F SD LK SSAS PT  DLLSESECA
Sbjct: 1   MSMLYFSISKRNSLPIRKFVQ-EEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECA 60

Query: 61  DDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSHKFD--- 120
           DDNFTTTEESEVEWPYFD R    +N  RSDDGSISDEESLIEIALPTGHYVS KFD   
Sbjct: 61  DDNFTTTEESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVD 120

Query: 121 -DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
            DEDD+SFR+QKL+D Q +KNLVEVLAE+NDINEEENLIEIDISMGSIKYSRFEIEA
Sbjct: 121 EDEDDISFRYQKLTDFQ-RKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEIEA 175

[Close]

BLAST of Clc02G09280 vs. ExPASy TrEMBL
Match: A0A6J1CG35 (uncharacterized protein LOC111011203 OS=Momordica charantia OX=3673 GN=LOC111011203 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 4.4e-60
Identity = 144/185 (77.84%), Postives = 154/185 (83.24%), Query Frame = 0


Query: 1   MSMLYFSISKRNSL------PVQKFVQEEEEEEEDQKELNFLSDQLKFSSASGPTTGDLL 60
           MSMLYF+ISKRNSL      P++KFV+EEEEE E   E++F SDQ KFSSAS P TGDLL
Sbjct: 53  MSMLYFAISKRNSLPIPIPIPIEKFVEEEEEEAE--AEVSFDSDQ-KFSSASAP-TGDLL 112

Query: 61  SESECADDNFTTTEESEVEWPYFDRRSYTAKNTDRSDDGSISDEESLIEIALPTGHYVSH 120
           SESECADDNFTTTEESEVEWP+ DR   TA N DRS DGSISDEESLIEIALPTGHYVSH
Sbjct: 113 SESECADDNFTTTEESEVEWPFSDRT--TAHNPDRS-DGSISDEESLIEIALPTGHYVSH 172

Query: 121 KFD------DEDDMSFRFQKLSDIQMKKNLVEVLAEMNDINEEENLIEIDISMGSIKYSR 174
           KFD      DEDDMSF  QKLSD Q +KNLVE+LAE+NDINEEENLIEIDISMGSIKYSR
Sbjct: 173 KFDDDEEDEDEDDMSFHLQKLSDFQKQKNLVELLAEINDINEEENLIEIDISMGSIKYSR 230

[Close]

BLAST of Clc02G09280 vs. TAIR 10
Match: AT2G04480.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35870.1); Has 38 Blast hits to 38 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-18
Identity = 45/89 (50.56%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 85  KNTDRSDDGSISDEESLIEIALPTGHYVSHKFDDEDDMSFRFQKLSDIQMKKNLVEVLAE 144
           K  +  DDG+I D+ESLIE++LP+GHY+ H ++   +  +   K+ D +    L ++L E
Sbjct: 163 KTNEEDDDGAIPDDESLIELSLPSGHYLGHHYNSNKNHLYIHNKVQDFR----LFDLLNE 222

Query: 145 MNDINEEENLIEIDISMGSIKYSRFEIEA 174
           +ND  EE+NLIEIDIS+GSIKYSRFEI+A
Sbjct: 223 INDFTEEDNLIEIDISIGSIKYSRFEIKA 247

[Close]

BLAST of Clc02G09280 vs. TAIR 10
Match: AT5G35870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G04480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-13
Identity = 43/92 (46.74%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 85  KNTDRSDDGSISDEESLIEIALPTGHYVSHKFD---DEDDMSFRFQKLSDIQMKKNLVEV 144
           KN D  DDG+I DEESLIE++LP+GHY+ H +     + D    +  + D +    L+++
Sbjct: 114 KNND-EDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQDQKIMYNNIPDFR----LIQL 173

Query: 145 LAEMNDINEEENLIEIDISMGSIKYSRFEIEA 174
            AE     E++NLIEIDIS+GSIK SRF+I+A
Sbjct: 174 SAEY----EDDNLIEIDISIGSIKCSRFQIKA 196

The following BLAST results are available for this feature:

BLAST of Clc02G09280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902685.1	6.1e-72	85.56	uncharacterized protein LOC120089322 [Benincasa hispida]	[more]
TYK11971.1	4.8e-69	83.89	uncharacterized protein E5676_scaffold177G001550 [Cucumis melo var. makuwa]	[more]
XP_008464163.1	4.8e-69	83.89	PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]	[more]
KAA0060802.1	3.1e-68	80.75	uncharacterized protein E6C27_scaffold137G00220 [Cucumis melo var. makuwa]	[more]
XP_011656887.2	2.0e-67	82.12	uncharacterized protein LOC105435780 [Cucumis sativus] >KAE8646805.1 hypothetica...	[more]

BLAST of Clc02G09280 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G09280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJH9	2.3e-69	83.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CMD0	2.3e-69	83.89	uncharacterized protein LOC103502111 OS=Cucumis melo OX=3656 GN=LOC103502111 PE=...	[more]
A0A5A7UY43	1.5e-68	80.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0KCP7	2.2e-67	82.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G112470 PE=4 SV=1	[more]
A0A6J1CG35	4.4e-60	77.84	uncharacterized protein LOC111011203 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of Clc02G09280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04480.1	1.9e-18	50.56	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G35870.1	1.8e-13	46.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 19..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..70
None	No IPR available	PANTHER	PTHR35708	GB\|AAD25831.1	coord: 2..173
None	No IPR available	PANTHER	PTHR35708:SF3	GB\|AAD25831.1	coord: 2..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09280.2	Clc02G09280.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane