Clc02G09270 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09270
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Nuclear transcription factor Y subunit B-3
Location	ClcChr02: 12335224 .. 12335841 (-)
RNA-Seq Expression	Clc02G09270
Synteny	Clc02G09270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG

mRNA sequence

ATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG

Coding sequence (CDS)

ATGGCGGATTCTGATAACGAATCGGGAGGTCACAACAGCAACGCGAACAGCGAGCTGTCGGCGAAGGAGCAGGACAGATTCTTGCCGATAGCGAACGTAAGCAGGATCATGAAGAAGGCGTTACCAGCAAACGCGAAGATCTCGAAAGATGCAAAAGAAACTGTACAAGAGTGCGTATCGGAGTTCATAAGCTTCATAACGGGAGAGGCATCGGACAAGTGCCAGAGAGAGAAAAGAAAGACAATCAACGGCGACGATTTGTTGTGGGCCATGACCACGCTTGGATTCGAAGAGTATGTGGAACCACTCAAGACTTATCTGCAGAAGTACAGGGAAATGGAAGGGGAAAAGAGCACTATGGGGAGACAGGGGGAGAAAGACGGTGCTGGTGGTGGGACCGGCGGCAGTGGGACAAATAGTGGTGGTGGTGGAGTCAACTCTGGTACTGCTGGTGGTGGTGGTGGCGGCGGTGGATTTAACGGAGTGGGTGGAATTTATGGTGGGATGATGATGATGGGGCATCATCAGGGAGGCGTTTATGGTGCTGGTGGATTTCACCATATGGGAATTGGCGGTGGGAAGGGTGGAAGTGGTGGTTCCGGCACCGGACACCGGTAG

Protein sequence

MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR

Homology

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BLAST of Clc02G09270 vs. NCBI nr
Match: XP_008464158.1 (PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_008464159.1 PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >KAA0060811.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa] >TYK08821.1 nuclear transcription factor Y subunit B-3 [Cucumis melo var. makuwa])

HSP 1 Score: 327.4 bits (838), Expect = 8.8e-86
Identity = 186/205 (90.73%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVY 180
           GRQGEKDG GGG GGS     GGGVNS     GG GGG+NGVGG+YGG+MMMGHHQGGVY
Sbjct: 121 GRQGEKDGGGGGPGGS-----GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVY 180

Query: 181 GAGGFHHMGIGGGKGGSGGSGTGHR 206
           G  GFHHMGIGGGKGGSG SGTGHR
Sbjct: 181 GGAGFHHMGIGGGKGGSGASGTGHR 200

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BLAST of Clc02G09270 vs. NCBI nr
Match: XP_023532503.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.0 bits (837), Expect = 1.1e-85
Identity = 191/208 (91.83%), Postives = 196/208 (94.23%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQG 180
            G +GEKD  G GGG GGSG N GGGGVN GT GGG  GGGFNGVGG+YGGMMMMGHHQG
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGVNPGT-GGGVSGGGFNGVGGMYGGMMMMGHHQG 180

Query: 181 GVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
           GVYG+GGFHHMGIGGGKGG+GGSGTGHR
Sbjct: 181 GVYGSGGFHHMGIGGGKGGNGGSGTGHR 207

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BLAST of Clc02G09270 vs. NCBI nr
Match: XP_004139999.1 (nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothetical protein Csa_005340 [Cucumis sativus])

HSP 1 Score: 324.3 bits (830), Expect = 7.5e-85
Identity = 187/206 (90.78%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVY 180
           GRQGEKDG GGG GGS     GGGVNS  A  GG GGG+NGVGG+YGG+MMMGHHQGGVY
Sbjct: 121 GRQGEKDGGGGGPGGS-----GGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVY 180

Query: 181 GAGGFHHMGIGGGKGGSGG-SGTGHR 206
           G  GFHHMGIG GKGGSGG SGTGHR
Sbjct: 181 GGAGFHHMGIGSGKGGSGGASGTGHR 201

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BLAST of Clc02G09270 vs. NCBI nr
Match: XP_038901772.1 (nuclear transcription factor Y subunit B-3 [Benincasa hispida] >XP_038901773.1 nuclear transcription factor Y subunit B-3 [Benincasa hispida])

HSP 1 Score: 322.4 bits (825), Expect = 2.8e-84
Identity = 188/209 (89.95%), Postives = 190/209 (90.91%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNG--VGGIYGGMMMMG--HHQ 180
           GRQGEKDG GGG GGSG N GGG       GGGGGGGG N    GG+YGGMMMMG  HHQ
Sbjct: 121 GRQGEKDGGGGGPGGSGANGGGG-------GGGGGGGGVNSGTTGGMYGGMMMMGHHHHQ 180

Query: 181 GGVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
           GGVYG GGFHHMGIGGGKGGSGGSGTGHR
Sbjct: 181 GGVYGGGGFHHMGIGGGKGGSGGSGTGHR 202

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BLAST of Clc02G09270 vs. NCBI nr
Match: XP_022947534.1 (nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918.1 Nuclear transcription factor Y subunit B-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 319.3 bits (817), Expect = 2.4e-83
Identity = 190/211 (90.05%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GAGGGTGGSGTN---SGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGH 180
            G +GEKD  G GGG GGSG N    GGGGVN GT GGG  GGGFNGVGG+YGGMMMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGT-GGGVSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
           HQGGVYG+GGFH MGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

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BLAST of Clc02G09270 vs. ExPASy Swiss-Prot
Match: O23310 (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NFYB3 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.9e-54
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGAGGGTGGSGTNSGGGGVNSG 149
            GRQG+K+G GGG GG+G+ SGG  +  G
Sbjct: 121 AGRQGDKEGGGGG-GGAGSGSGGAPMYGG 146

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BLAST of Clc02G09270 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 125/212 (58.96%), Postives = 141/212 (66.51%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHH- 180
           ++ +GR                   GG V        G GGGF G G   GGM    HH 
Sbjct: 121 RTGLGRP----------------QTGGEVGEHQRDAVGDGGGFYGGG---GGMQYHQHHQ 180

Query: 181 ----QGGVYGAGGFHHMGIGGGKGGSGGSGTG 204
               Q  +YGA        GGG    GG+ +G
Sbjct: 181 FLHQQNHMYGA-------TGGGSDSGGGAASG 186

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BLAST of Clc02G09270 vs. ExPASy Swiss-Prot
Match: Q69J40 (Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB10 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.1e-44
Identity = 138/228 (60.53%), Postives = 153/228 (67.11%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           M DSDNESGG  SNA    SA+EQDRFLPIANVSRIMK+ALPANAKISKDAKETVQECVS
Sbjct: 1   MPDSDNESGG-PSNAGEYASAREQDRFLPIANVSRIMKRALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+Y++PLK YL K+RE+EGEK+ +
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYIDPLKLYLHKFRELEGEKA-I 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMG------- 180
           G  G   G    +GGSG  SG G  +   A    GG G  G GG  G +MMMG       
Sbjct: 121 GAAGSGGGGAASSGGSG--SGSGSHHHQDASRNNGGYGMYGGGG--GMIMMMGQPMYGSP 180

Query: 181 ----------------HHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
                           HHQ  + G G + H G GGG G S  SG G +
Sbjct: 181 PASSAGYAQPPPPHHHHHQMVMGGKGAYGHGG-GGGGGPSPSSGYGRQ 221

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BLAST of Clc02G09270 vs. ExPASy Swiss-Prot
Match: Q75IZ7 (Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39947 GN=NFYB8 PE=1 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.6e-43
Identity = 132/226 (58.41%), Postives = 148/226 (65.49%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSA-KEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60
           M DSDN+SGG ++ A  ELS+ +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV
Sbjct: 1   MPDSDNDSGGPSNYAGGELSSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECV 60

Query: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKST 120
           SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YV+PLK YL K+RE+EGE+  
Sbjct: 61  SEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKHYLHKFREIEGER-- 120

Query: 121 MGRQGEKDGAGGGTGGSGTNSGG--GGVNSGTAGGGGGGGGFNGVGGIYGGMMMM----- 180
                    A   T G+GT++          TA   GG  G+   G   GGMMMM     
Sbjct: 121 ---------AAASTTGAGTSAASTTPPQQQHTANAAGGYAGYAAPGAGPGGMMMMMGQPM 180

Query: 181 -------------GHHQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
                         HH   + G GGF H   GGG G S  SG G +
Sbjct: 181 YGSPPPPPQQQQQQHHHMAMGGRGGFGHHPGGGGGGSSSSSGHGRQ 215

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BLAST of Clc02G09270 vs. ExPASy Swiss-Prot
Match: Q0J7P4 (Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=39947 GN=HD5 PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.1e-35
Identity = 113/196 (57.65%), Postives = 129/196 (65.82%), Query Frame = 0


Query: 11  HNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEA 70
           +      +  AKEQDRFLPIANVSRIMK++LPANAKISK++KETVQECVSEFISF+TGEA
Sbjct: 46  YGGGGGGDSPAKEQDRFLPIANVSRIMKRSLPANAKISKESKETVQECVSEFISFVTGEA 105

Query: 71  SDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTMGRQGEKDGAG 130
           SDKCQREKRKTINGDDLLWAMTTLGFE YV PLK+YL +YRE EGEK+        D  G
Sbjct: 106 SDKCQREKRKTINGDDLLWAMTTLGFEAYVGPLKSYLNRYREAEGEKA--------DVLG 165

Query: 131 GGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIY--GGMMMMGHHQGGVYGAGGFHHM 190
           G  G +    G G    G  GGGGGG     + G Y   G +   HH       GG   +
Sbjct: 166 GAGGAAAARHGEG----GCCGGGGGGADGVVIDGHYPLAGGLSHSHHGHQQQDGGGDVGL 225

Query: 191 GIGGGKGGSG-GSGTG 204
            +GGG  G G  +G G
Sbjct: 226 MMGGGDAGVGYNAGAG 229

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BLAST of Clc02G09270 vs. ExPASy TrEMBL
Match: A0A1S3CMC5 (nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC103502105 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.3e-86
Identity = 186/205 (90.73%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVY 180
           GRQGEKDG GGG GGS     GGGVNS     GG GGG+NGVGG+YGG+MMMGHHQGGVY
Sbjct: 121 GRQGEKDGGGGGPGGS-----GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVY 180

Query: 181 GAGGFHHMGIGGGKGGSGGSGTGHR 206
           G  GFHHMGIGGGKGGSG SGTGHR
Sbjct: 181 GGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of Clc02G09270 vs. ExPASy TrEMBL
Match: A0A5A7V4W8 (Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00280 PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 4.3e-86
Identity = 186/205 (90.73%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVY 180
           GRQGEKDG GGG GGS     GGGVNS     GG GGG+NGVGG+YGG+MMMGHHQGGVY
Sbjct: 121 GRQGEKDGGGGGPGGS-----GGGVNSSGTAAGGAGGGYNGVGGMYGGVMMMGHHQGGVY 180

Query: 181 GAGGFHHMGIGGGKGGSGGSGTGHR 206
           G  GFHHMGIGGGKGGSG SGTGHR
Sbjct: 181 GGAGFHHMGIGGGKGGSGASGTGHR 200

[Close]

BLAST of Clc02G09270 vs. ExPASy TrEMBL
Match: A0A0A0KFU2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G112490 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.6e-85
Identity = 187/206 (90.78%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120

Query: 121 GRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHHQGGVY 180
           GRQGEKDG GGG GGS     GGGVNS  A  GG GGG+NGVGG+YGG+MMMGHHQGGVY
Sbjct: 121 GRQGEKDGGGGGPGGS-----GGGVNSSGAAAGGAGGGYNGVGGMYGGVMMMGHHQGGVY 180

Query: 181 GAGGFHHMGIGGGKGGSGG-SGTGHR 206
           G  GFHHMGIG GKGGSGG SGTGHR
Sbjct: 181 GGAGFHHMGIGSGKGGSGGASGTGHR 201

[Close]

BLAST of Clc02G09270 vs. ExPASy TrEMBL
Match: A0A6J1G731 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN=LOC111451370 PE=3 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 1.2e-83
Identity = 190/211 (90.05%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GAGGGTGGSGTN---SGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGH 180
            G +GEKD  G GGG GGSG N    GGGGVN GT GGG  GGGFNGVGG+YGGMMMMGH
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGT-GGGVSGGGFNGVGGMYGGMMMMGH 180

Query: 181 HQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
           HQGGVYG+GGFH MGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHQMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of Clc02G09270 vs. ExPASy TrEMBL
Match: A0A6J1I2E0 (nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=LOC111469875 PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 190/211 (90.05%), Postives = 195/211 (92.42%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLK+YLQKYREMEGEKSTM
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKSYLQKYREMEGEKSTM 120

Query: 121 -GRQGEKD--GAGGGTGGSGTN---SGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGH 180
            G +GEKD  G GGG GGSG N    GGGGVN GT GGG  GGGFNGVGG+YGGMMMM H
Sbjct: 121 GGGKGEKDGGGGGGGPGGSGANVGGGGGGGVNPGT-GGGVSGGGFNGVGGMYGGMMMMVH 180

Query: 181 HQGGVYGAGGFHHMGIGGGKGGSGGSGTGHR 206
           HQGGVYG+GGFHHMGIGGGKGG+GGSGTGHR
Sbjct: 181 HQGGVYGSGGFHHMGIGGGKGGNGGSGTGHR 210

[Close]

BLAST of Clc02G09270 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 213.8 bits (543), Expect = 1.3e-55
Identity = 121/149 (81.21%), Postives = 132/149 (88.59%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MADSDN+SGGH    N+  S +EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS
Sbjct: 1   MADSDNDSGGHKDGGNA--STREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEK-ST 120
           EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLK YLQKYRE+EGEK +T
Sbjct: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTT 120

Query: 121 MGRQGEKDGAGGGTGGSGTNSGGGGVNSG 149
            GRQG+K+G GGG GG+G+ SGG  +  G
Sbjct: 121 AGRQGDKEGGGGG-GGAGSGSGGAPMYGG 146

[Close]

BLAST of Clc02G09270 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-45
Identity = 125/212 (58.96%), Postives = 141/212 (66.51%), Query Frame = 0


Query: 1   MADSDNESG----GHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQ 60
           M DSD +SG    G+N N  S LS +EQDRFLPIANVSRIMKKALPANAKISKDAKET+Q
Sbjct: 1   MGDSDRDSGGGQNGNNQNGQSSLSPREQDRFLPIANVSRIMKKALPANAKISKDAKETMQ 60

Query: 61  ECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGE 120
           ECVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLK YLQ++RE+EGE
Sbjct: 61  ECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGE 120

Query: 121 KSTMGRQGEKDGAGGGTGGSGTNSGGGGVNSGTAGGGGGGGGFNGVGGIYGGMMMMGHH- 180
           ++ +GR                   GG V        G GGGF G G   GGM    HH 
Sbjct: 121 RTGLGRP----------------QTGGEVGEHQRDAVGDGGGFYGGG---GGMQYHQHHQ 180

Query: 181 ----QGGVYGAGGFHHMGIGGGKGGSGGSGTG 204
               Q  +YGA        GGG    GG+ +G
Sbjct: 181 FLHQQNHMYGA-------TGGGSDSGGGAASG 186

[Close]

BLAST of Clc02G09270 vs. TAIR 10
Match: AT3G53340.1 (nuclear factor Y, subunit B10 )

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-42
Identity = 88/138 (63.77%), Postives = 104/138 (75.36%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANS------ELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKET 60
           MA+S    GG  S+ +        L+ +EQDRFLPIAN+SRIMK+ LP N KI+KDAKET
Sbjct: 1   MAESQTGGGGGGSHESGGDQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKET 60

Query: 61  VQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREME 120
           +QECVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLK YL +YREME
Sbjct: 61  MQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREME 120

Query: 121 GEKSTMGRQGEKDGAGGG 133
           G+    G+ GE      G
Sbjct: 121 GDTKGSGKGGESSAKRDG 138

[Close]

BLAST of Clc02G09270 vs. TAIR 10
Match: AT2G13570.1 (nuclear factor Y, subunit B7 )

HSP 1 Score: 168.3 bits (425), Expect = 6.4e-42
Identity = 87/126 (69.05%), Postives = 103/126 (81.75%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           +A+++  S    +N N+  + KEQDRFLPIANV RIMKK LP N KISKDAKETVQECVS
Sbjct: 15  VAETNPGSPSSKTNNNNN-NNKEQDRFLPIANVGRIMKKVLPGNGKISKDAKETVQECVS 74

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLK YL KYR+ EGEK   
Sbjct: 75  EFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVNS 134

Query: 121 GRQGEK 127
            +Q ++
Sbjct: 135 PKQQQQ 139

[Close]

BLAST of Clc02G09270 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-41
Identity = 89/137 (64.96%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 1   MADSDNESGGHNSNANSELSAKEQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVS 60
           MAD+ +   G    +    S +EQDR+LPIAN+SRIMKKALP N KI KDAK+TVQECVS
Sbjct: 1   MADTPSSPAGDGGESGG--SVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVS 60

Query: 61  EFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKTYLQKYREMEGEKSTM 120
           EFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK YL +YRE+EG+    
Sbjct: 61  EFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGS 120

Query: 121 GRQGEKDG--AGGGTGG 136
           G+ G+     AGGG  G
Sbjct: 121 GKSGDGSNRDAGGGVSG 135

The following BLAST results are available for this feature:

BLAST of Clc02G09270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464158.1	8.8e-86	90.73	PREDICTED: nuclear transcription factor Y subunit B-3 [Cucumis melo] >XP_0084641...	[more]
XP_023532503.1	1.1e-85	91.83	nuclear transcription factor Y subunit B-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_004139999.1	7.5e-85	90.78	nuclear transcription factor Y subunit B-3 [Cucumis sativus] >KGN46611.1 hypothe...	[more]
XP_038901772.1	2.8e-84	89.95	nuclear transcription factor Y subunit B-3 [Benincasa hispida] >XP_038901773.1 n...	[more]
XP_022947534.1	2.4e-83	90.05	nuclear transcription factor Y subunit B-3-like [Cucurbita moschata] >KAG6604918...	[more]

BLAST of Clc02G09270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23310	1.9e-54	81.21	Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	2.3e-44	58.96	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q69J40	5.1e-44	60.53	Nuclear transcription factor Y subunit B-10 OS=Oryza sativa subsp. japonica OX=3...	[more]
Q75IZ7	5.6e-43	58.41	Nuclear transcription factor Y subunit B-8 OS=Oryza sativa subsp. japonica OX=39...	[more]
Q0J7P4	1.1e-35	57.65	Nuclear transcription factor Y subunit B-11 OS=Oryza sativa subsp. japonica OX=3...	[more]

BLAST of Clc02G09270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CMC5	4.3e-86	90.73	nuclear transcription factor Y subunit B-3 OS=Cucumis melo OX=3656 GN=LOC1035021...	[more]
A0A5A7V4W8	4.3e-86	90.73	Nuclear transcription factor Y subunit B-3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0KFU2	3.6e-85	90.78	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G1124...	[more]
A0A6J1G731	1.2e-83	90.05	nuclear transcription factor Y subunit B-3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1I2E0	1.5e-83	90.05	nuclear transcription factor Y subunit B-3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Clc02G09270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14540.1	1.3e-55	81.21	nuclear factor Y, subunit B3	[more]
AT5G47640.1	1.6e-45	58.96	nuclear factor Y, subunit B2	[more]
AT3G53340.1	2.9e-42	63.77	nuclear factor Y, subunit B10	[more]
AT2G13570.1	6.4e-42	69.05	nuclear factor Y, subunit B7	[more]
AT2G38880.2	1.1e-41	64.96	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 74..92 score: 38.52 coord: 93..111 score: 44.86 coord: 55..73 score: 50.24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..154
None	No IPR available	PANTHER	PTHR11064:SF128	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3	coord: 1..181
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 15..134 e-value: 8.3E-48 score: 163.8
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..129
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 27..91 e-value: 1.9E-27 score: 95.3
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 1..181
IPR003956	Transcription factor, NFYB/HAP3, conserved site	PROSITE	PS00685	NFYB_HAP3	coord: 58..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09270.1	Clc02G09270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function	GO:0043565	sequence-specific DNA binding