Clc02G09210 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G09210
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribosomal_L30 domain-containing protein
Location	ClcChr02: 11969818 .. 11972793 (-)
RNA-Seq Expression	Clc02G09210
Synteny	Clc02G09210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGTCTCTCTTCCTCCTTTTCTTGGAGAAGCTTGTGGAATATTTATAGGCGTCAAAAAGTTGATATCATGATGACCTGACACCTTTACATTAAATTTCAGCCACACTGCATAGACTTTTCAGATTGTCAGCCTATTTGTTCTGCCATGATCTGATTGGGTGTTGTCCTTTTTCATAATGACATGACAGCTGTTTGAGCATGCGTCTATTTCTACTTTTCAGATTGTCAACGCATAGGCTCGACGCATGGTCTCAACCCACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTAACCCTGCGTTAGGAACATAAAAGCTCATCGTTTTTCAGGTATTTTCTTTTGTAAATAGTGCCAACGCATGGTGATACATTTTTCATCATTTAACTACCAAAATCATGCGTTTAACTCCAAAGTTACTCTAATTAAATCAAATAGTGACTATAATAACTTGTATTTCTACAAGTTATCAAAGAGATAAAATGTAATTAGCATATTTTTTCCATTTTCAATTGGAGAGAGAAAATGCATTTGACGTTTGATTTTTGATATTGTGGATATATTCCATTGTTTATTTGAGTACTATTTATTTTCATGTAATATATTTTATTGTTTATTTGACATATATCCAAGGTATTTTGATATGTATGACCTTATAATTAAGTATCGCTTGTGTATCGGTAATATATATGTGTATTCTAATGCAATTTTTATATGATGGTTTGACTTATTTGAGTTTGTCTATTATAATTCATTGTTTATTTTGAGTTTGTTTATATTTTGCATTATTATCTCATATATACTATAGTTTAGATTCGTGGTTATTTTTAAATATACGTTAGAACATTTGTCTTAAATGTTTGCAAATATTCTAACTAATATATAAAATATATTAGTAAAATTGACTAAATTTCACTTAAGTAAATTTAACAGAAACTCCTTAATAGAAATATCTAATTCTCATTATTGTTTCAAATTCAATTTAAAATCTCATGATTTTCAAATAAACAAAGCTATCTACCACTGTCTATAAATCACAAATGAACTTAATGTTCAATACATATTAGTGTATATATCATAAAACAAAAAGTTTCAATAAAATTTGAAGATATATATCATAGTATATATCGGAAAAGATATATATGTCACAGTATATATCGAAAAAGAACAAAATAGTTTCGATATAACTGTATCCATATCACTTCAATATAAACCATCCCGCACCGTCTAACTGTCATCATCCAGAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAGATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCGTTAGTGAAAAAACAAAAGCCATAATTTTTTTATTTTTAAATGAAAGGTCCAAGAGCCCTTATTTGAAGGCCTTTTATGTCAGAAAGCCCAAATTATTTTAATGTCGAGCAGGAGCAGCCCAAATGGACAATAAGTTATAACTAAATACAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACACAGCCTCCAATCTTCTCTTCGTCAGTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGCCACCACCGCCGGTCAATTTCAAAGCTCTCTGTTTTCTCCCTCTTTTTTCACTCTGTTTTGAAACCTTCTTTAATTTTAACCTAAATTATTAGGTAGGTAGTTACGTAATATGCATCTTCATCCTCAATCCAAGGTCAATTTATATGGTAAAGAAAATATATAAAAATGTATATAAATCTTTTTTTTAAGAAATTAACGAATCGCCTTATCCTACATTACTTTTAGAGGACTTTATTGAAAGCTTCAAGTGGATATGAAGTTGAAGTAAGTGCCTATTTGAGATGACGAAATCGTGGCATAGATGTGGTTTCTACTTAAAACTATCATCTATGTCTTTTTATGTCTTTTTATGTTTTAGTTGTGCAACTAGAGCATTTGGTAGAGCTTCCAATCTATTGAAGATGTTCATTTGTTTACTCGAAATTTGGGAACTGCAAAAAAGTCTTCCTTCCCAACAAATTGAAAGATTTCGTTGAGGTGCTTGGATGAGATTGTTGATGTGTTTGCGGAGAAAACTGTTTCTTAACCTTTGTTTTTGTTTGTAGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTTGCTTTATATACTTGTTCTCTACTGCGCACATGCACACACTACGCAAAAGCCTCATGGGGACTGAATGTTGAATGTTGTTGTTTTTTGTTTTTATTTTTATTTTTTTTGTTATTTGATTATAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGA

mRNA sequence

ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGCTCGACGCATGGTCTCAACCCACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTAACCCTGCAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAGATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGCCACCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGA

Coding sequence (CDS)

ATGCTCAGAATCCTTCTCTCAGAAGAGTTCGAAATGGAGGCTGGTTATGGTGAGGGAGAAATAGTGCAGAGCTTTCGCCTCTTGAACTGGCTCGACGCATGGTCTCAACCCACTAGGCTCGACGCATGGTCTCAACGCATAGGCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCGTCTCTTCGTACTTCGATTGTTTGCGCTTCTTTTCTTAACCCTGCAAGCCCATGCCGTGGATTAGTCCTATGGCCGATCAGCTTGCCTCGCGCCATATTTGCTCTCCCCGCCAAAGATGCTCGGGATCTGCTTGCCCCGTGCCAGAAGATGCACTACATCTACTTGCCACGCTGTCCGTCACCCAGCGGGGAGGAGAAAAGACACTGGCTTCGTCTTCAACGCAAGCCCCTCCTCATCATCTTACTATTTATTCGTCTGAGCAACTCTATTTTCCGGGCCTACGCCGTTTCGCCGCCGACCGTCAGCCTCGTTGCCGACCACGCCTCAATCTCGCCATCGACCATCTCGCCGCGCTTTGCCTTGTCGCCACCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCCTGGAGTCCTAATCTTTATATCACACTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGTACATTAGAGGCGTTGCGGCTCCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATAGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCCCTCCGACCTCCATTAGTTGTAAATCACCTTCCGGCTCCAAAGTCTGCTCCTGCCTCTTGA

Protein sequence

MLRILLSEEFEMEAGYGEGEIVQSFRLLNWLDAWSQPTRLDAWSQRIGSTHGFPLVLATASSLRTSIVCASFLNPASPCRGLVLWPISLPRAIFALPAKDARDLLAPCQKMHYIYLPRCPSPSGEEKRHWLRLQRKPLLIILLFIRLSNSIFRAYAVSPPTVSLVADHASISPSTISPRFALSPPPPILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS

Homology

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BLAST of Clc02G09210 vs. NCBI nr
Match: KAG6604875.1 (hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-50
Identity = 103/110 (93.64%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 188 ILEILDMNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWN 247
           ILE+LDMNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWN
Sbjct: 32  ILEVLDMNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWN 91

Query: 248 TPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKS 298
           TPTVRGM+QQVKRL+VVETEEM+KARKQKVEQHK+LRPPLVVNHLPAP S
Sbjct: 92  TPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPSS 141

[Close]

BLAST of Clc02G09210 vs. NCBI nr
Match: XP_023512952.1 (uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 206.1 bits (523), Expect = 4.3e-49
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLPAP SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPAPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. NCBI nr
Match: XP_022944386.1 (uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothetical protein SDJN03_29819, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-48
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. NCBI nr
Match: KAG7010749.1 (rpmD [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-48
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHVALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. NCBI nr
Match: XP_038901296.1 (50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal protein L30 [Benincasa hispida] >XP_038901298.1 50S ribosomal protein L30 [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 4.8e-48
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRLIVVETEEMYKARKQKVEQHKALRPP+VV+HLPAP S  AS
Sbjct: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPIVVDHLPAPISPLAS 108

[Close]

BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: Q8FS51 (50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) OX=196164 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-04
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ LIVVE
Sbjct: 3   LKITQVKGTIGTKPKHRDNLRSLGLKRIRHSVVRPDTPEVRGMVQAVRHLIVVE 56

[Close]

BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: Q8NSX3 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / BCRC 11384 / JCM 1318 / LMG 3730 / NCIMB 10025) OX=196627 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.6e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3   LKITQIKGTVGTKPKHRENLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: A4QBL5 (50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=rpmD PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 4.4e-04
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGM+  V+ LIVVE
Sbjct: 3   LKITQIKGTVGTKPKHRDNLRSLGLKRIRHTVIRPDTPEVRGMILAVRHLIVVE 56

[Close]

BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: A8ZV75 (50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 39069 / Hxd3) OX=96561 GN=rpmD PE=3 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 4.4e-04
Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 209 SPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GM+++V  L+ VE
Sbjct: 2   SGSIKVTLAKSMIGRPEKHRKVLRAMGLTKVNRTVCLQDTPTVQGMIRKVSHLLRVE 58

[Close]

BLAST of Clc02G09210 vs. ExPASy Swiss-Prot
Match: C3PL27 (50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CIP 107346 / CN-1) OX=548476 GN=rpmD PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.8e-04
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 212 LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVE 266
           L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ L+ VE
Sbjct: 3   LKITQVKGLVGTKPNHRANMESLGLKRIGHSVVKQDTPIIRGMVHKVRHLVTVE 56

[Close]

BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A6J1FUA4 (uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC111448848 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.0e-48
Identity = 102/108 (94.44%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPI WSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPITWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           MLQQVKRL+VVETEEMYKARKQKVEQH ALRPPLVVNHLP+P SA AS
Sbjct: 61  MLQQVKRLVVVETEEMYKARKQKVEQHAALRPPLVVNHLPSPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A1S3C214 (50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-48
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPAP SA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A5A7VAZ6 (50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold757G00090 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-48
Identity = 99/108 (91.67%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPAP SA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A6J1CI25 (uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011134 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 8.8e-48
Identity = 100/107 (93.46%), Postives = 102/107 (95.33%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPA 301
           M+QQVKRL+VVETEEMYKARKQKVEQHKALRPPLVVNHLP P S  A
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKVEQHKALRPPLVVNHLPVPSSTSA 107

[Close]

BLAST of Clc02G09210 vs. ExPASy TrEMBL
Match: A0A0A0LN29 (Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.2e-47
Identity = 99/108 (91.67%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+QQVKRL+VVETEEMYKARKQK+EQH+ALRPPLV+NHLPAP SA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

[Close]

BLAST of Clc02G09210 vs. TAIR 10
Match: AT5G55140.1 (ribosomal protein L30 family protein )

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-33
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 194 MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 253
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 254 MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPAPKSAPAS 302
           M+ QVKR++VVETEEMY ARK+    HKALRPPLVV+H     S+PA+
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSH-----SSPAT 103

The following BLAST results are available for this feature:

BLAST of Clc02G09210 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604875.1	1.8e-50	93.64	hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023512952.1	4.3e-49	96.30	uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]	[more]
XP_022944386.1	2.2e-48	94.44	uncharacterized protein LOC111448848 [Cucurbita moschata] >KAG6570904.1 hypothet...	[more]
KAG7010749.1	2.8e-48	94.44	rpmD [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_038901296.1	4.8e-48	95.37	50S ribosomal protein L30 [Benincasa hispida] >XP_038901297.1 50S ribosomal prot...	[more]

BLAST of Clc02G09210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8FS51	2.6e-04	50.00	50S ribosomal protein L30 OS=Corynebacterium efficiens (strain DSM 44549 / YS-31...	[more]
Q8NSX3	2.6e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM...	[more]
A4QBL5	4.4e-04	48.15	50S ribosomal protein L30 OS=Corynebacterium glutamicum (strain R) OX=340322 GN=...	[more]
A8ZV75	4.4e-04	43.86	50S ribosomal protein L30 OS=Desulfococcus oleovorans (strain DSM 6200 / JCM 390...	[more]
C3PL27	5.8e-04	40.74	50S ribosomal protein L30 OS=Corynebacterium aurimucosum (strain ATCC 700975 / D...	[more]

BLAST of Clc02G09210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FUA4	1.0e-48	94.44	uncharacterized protein LOC111448848 OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]
A0A1S3C214	3.0e-48	91.67	50S ribosomal protein L30 OS=Cucumis melo OX=3656 GN=LOC103495997 PE=3 SV=1	[more]
A0A5A7VAZ6	3.0e-48	91.67	50S ribosomal protein L30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1CI25	8.8e-48	93.46	uncharacterized protein LOC111011134 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A0A0LN29	1.2e-47	91.67	Ribosomal_L30 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G4160...	[more]

BLAST of Clc02G09210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55140.1	2.1e-33	64.81	ribosomal protein L30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005996	Ribosomal protein L30, bacterial-type	TIGRFAM	TIGR01308	TIGR01308	coord: 212..265 e-value: 6.0E-18 score: 62.3
IPR005996	Ribosomal protein L30, bacterial-type	PANTHER	PTHR15892	MITOCHONDRIAL RIBOSOMAL PROTEIN L30	coord: 194..299
IPR005996	Ribosomal protein L30, bacterial-type	HAMAP	MF_01371_B	Ribosomal_L30_B	coord: 209..266 score: 14.914772
IPR005996	Ribosomal protein L30, bacterial-type	CDD	cd01658	Ribosomal_L30	coord: 212..265 e-value: 1.00104E-16 score: 70.913
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	GENE3D	3.30.1390.20		coord: 210..271 e-value: 2.4E-17 score: 64.1
IPR036919	Ribosomal protein L30, ferredoxin-like fold domain superfamily	SUPERFAMILY	55129	Ribosomal protein L30p/L7e	coord: 212..265
IPR016082	Ribosomal protein L30, ferredoxin-like fold domain	PFAM	PF00327	Ribosomal_L30	coord: 213..262 e-value: 1.5E-15 score: 56.8
None	No IPR available	PANTHER	PTHR15892:SF4	RIBOSOMAL PROTEIN L30, FERREDOXIN-LIKE FOLD DOMAIN-CONTAINING PROTEIN-RELATED	coord: 194..299

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G09210.1	Clc02G09210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome