Clc02G08865 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G08865
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ThiF domain-containing protein
Location	ClcChr02: 11096043 .. 11096435 (+)
RNA-Seq Expression	Clc02G08865
Synteny	Clc02G08865

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACGCAGGGTTCAATCCTCGCCCAAATCATATACAAATCGCACGGAACAATTCCACAAGTACTTGAAGCCCGGTGCGTTAGCGCTGATGCGAGACTCTCAAATCAGCGCCAAATGGTACCGATTCAACTCCATCTCTCAGATCTACCTTCGCCGTACTTCTCTTCTTGAGTCATCTCCACTTCCCACTACCGGTCAATCGGAGATTGACATGGTCGATGATTTCCCTTCTTTGGTTGGTAGGGTTTATGGTCCCTTGTGCCTGAAGAGGAAGAAGCTTGCGGCGATTAAGTCTACCTGGTTTCCGAGCCCTAACTTGCAGACTCCAACTACCGATTTAACTCGAGACCCGATTATTGATGTGTTTAATAGCGATGTTGCTGCGCATTAA

mRNA sequence

ATGAAACGCAGGGTTCAATCCTCGCCCAAATCATATACAAATCGCACGGAACAATTCCACAAGTACTTGAAGCCCGGTGCGTTAGCGCTGATGCGAGACTCTCAAATCAGCGCCAAATGGTACCGATTCAACTCCATCTCTCAGATCTACCTTCGCCGTACTTCTCTTCTTGAGTCATCTCCACTTCCCACTACCGGTCAATCGGAGATTGACATGGTCGATGATTTCCCTTCTTTGGTTGGTAGGGTTTATGGTCCCTTGTGCCTGAAGAGGAAGAAGCTTGCGGCGATTAAGTCTACCTGGTTTCCGAGCCCTAACTTGCAGACTCCAACTACCGATTTAACTCGAGACCCGATTATTGATGTGTTTAATAGCGATGTTGCTGCGCATTAA

Coding sequence (CDS)

ATGAAACGCAGGGTTCAATCCTCGCCCAAATCATATACAAATCGCACGGAACAATTCCACAAGTACTTGAAGCCCGGTGCGTTAGCGCTGATGCGAGACTCTCAAATCAGCGCCAAATGGTACCGATTCAACTCCATCTCTCAGATCTACCTTCGCCGTACTTCTCTTCTTGAGTCATCTCCACTTCCCACTACCGGTCAATCGGAGATTGACATGGTCGATGATTTCCCTTCTTTGGTTGGTAGGGTTTATGGTCCCTTGTGCCTGAAGAGGAAGAAGCTTGCGGCGATTAAGTCTACCTGGTTTCCGAGCCCTAACTTGCAGACTCCAACTACCGATTTAACTCGAGACCCGATTATTGATGTGTTTAATAGCGATGTTGCTGCGCATTAA

Protein sequence

MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESSPLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPIIDVFNSDVAAH

Homology

[Close]

BLAST of Clc02G08865 vs. NCBI nr
Match: XP_038902395.1 (uncharacterized protein LOC120089036 [Benincasa hispida])

HSP 1 Score: 229.6 bits (584), Expect = 1.6e-56
Identity = 109/130 (83.85%), Postives = 119/130 (91.54%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           MKR+++ SPK Y +RTEQFHKYLKPGALA MRDSQISAKWYRFNS+SQIYLRRTS L SS
Sbjct: 1   MKRKLKFSPKPYADRTEQFHKYLKPGALAQMRDSQISAKWYRFNSLSQIYLRRTSPLPSS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           PL T GQSEID+VDDFPSL GR YGP CLKRKKLAAIK+TWFPSPNLQTPTTD+TRDP++
Sbjct: 61  PLSTIGQSEIDVVDDFPSLAGRGYGPFCLKRKKLAAIKATWFPSPNLQTPTTDITRDPVV 120

Query: 121 DVFNSDVAAH 131
           DVFNSDVAAH
Sbjct: 121 DVFNSDVAAH 130

[Close]

BLAST of Clc02G08865 vs. NCBI nr
Match: XP_023513131.1 (uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 210.3 bits (534), Expect = 9.9e-51
Identity = 106/130 (81.54%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RRVQ S K   NRTEQFHKYLKPGALA MRDS+ISA+ YR+NS+SQIYLRRT+ LESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKMRDSRISARSYRYNSLSQIYLRRTASLESS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           PL   GQSEID VDDFPSL GRVYGPLCLKRKK A IKSTWFPSPNLQTPTTDLT +PII
Sbjct: 61  PLSAIGQSEID-VDDFPSLAGRVYGPLCLKRKKFAGIKSTWFPSPNLQTPTTDLTGEPII 120

Query: 121 DVFNSDVAAH 131
           D FNSDVAAH
Sbjct: 121 DAFNSDVAAH 129

[Close]

BLAST of Clc02G08865 vs. NCBI nr
Match: XP_022986202.1 (uncharacterized protein LOC111484017 [Cucurbita maxima])

HSP 1 Score: 204.1 bits (518), Expect = 7.1e-49
Identity = 103/130 (79.23%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RRVQ S K   NRTEQFHK+LKPGALA MRDS+ISA+ YR+NS+SQI+LRRT+ LESS
Sbjct: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           PL   GQSEID VDDFPSL GRVYGPLCLKRKKLA IK+TWFPSPNLQTPTTDLT D I+
Sbjct: 61  PLSAIGQSEID-VDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIV 120

Query: 121 DVFNSDVAAH 131
           D FNSDVAAH
Sbjct: 121 DAFNSDVAAH 129

[Close]

BLAST of Clc02G08865 vs. NCBI nr
Match: XP_022944248.1 (uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothetical protein SDJN03_29799, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010732.1 hypothetical protein SDJN02_27528, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.9 bits (507), Expect = 1.3e-47
Identity = 101/130 (77.69%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RRVQ S K   NRTEQFHKYLKPGALA +RDS+ISA+ YR+NS+SQIYLRRT+  ESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKIRDSRISARLYRYNSLSQIYLRRTASPESS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           PL + GQSEID VDDFPSL GRVYGPLCLKRKK + IKSTWFPSPNLQTPT DL+ D II
Sbjct: 61  PLSSIGQSEID-VDDFPSLSGRVYGPLCLKRKKFSGIKSTWFPSPNLQTPTADLSGDSII 120

Query: 121 DVFNSDVAAH 131
           D FNSDVAAH
Sbjct: 121 DAFNSDVAAH 129

[Close]

BLAST of Clc02G08865 vs. NCBI nr
Match: PON83836.1 (hypothetical protein TorRG33x02_203870 [Trema orientale])

HSP 1 Score: 117.5 bits (293), Expect = 8.8e-23
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RR ++  +S  +RTE F KYLKPGALA +RDS+ISA+ +R  S++QI   R+S   S 
Sbjct: 1   MNRRTRAIHRSSPSRTEPFLKYLKPGALAQIRDSRISARSHRVVSLAQI---RSSQPSSP 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           P  T GQ  +  +D FP   GRV+GP C +RKKL A K+  FPS N  +P  D   DPI+
Sbjct: 61  PPSTPGQLSVAAMDGFPCFSGRVFGPRCPQRKKLVASKAVLFPSQNPSSPVLD-AADPIM 120

Query: 121 DVFNSDVAAH 131
           DVF++D+AAH
Sbjct: 121 DVFSTDIAAH 126

[Close]

BLAST of Clc02G08865 vs. ExPASy TrEMBL
Match: A0A6J1J6X7 (uncharacterized protein LOC111484017 OS=Cucurbita maxima OX=3661 GN=LOC111484017 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.5e-49
Identity = 103/130 (79.23%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RRVQ S K   NRTEQFHK+LKPGALA MRDS+ISA+ YR+NS+SQI+LRRT+ LESS
Sbjct: 1   MNRRVQLSHKQRANRTEQFHKFLKPGALAKMRDSRISARSYRYNSLSQIHLRRTASLESS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           PL   GQSEID VDDFPSL GRVYGPLCLKRKKLA IK+TWFPSPNLQTPTTDLT D I+
Sbjct: 61  PLSAIGQSEID-VDDFPSLSGRVYGPLCLKRKKLAGIKTTWFPSPNLQTPTTDLTGDHIV 120

Query: 121 DVFNSDVAAH 131
           D FNSDVAAH
Sbjct: 121 DAFNSDVAAH 129

[Close]

BLAST of Clc02G08865 vs. ExPASy TrEMBL
Match: A0A6J1FXV4 (uncharacterized protein LOC111448755 OS=Cucurbita moschata OX=3662 GN=LOC111448755 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 6.5e-48
Identity = 101/130 (77.69%), Postives = 110/130 (84.62%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RRVQ S K   NRTEQFHKYLKPGALA +RDS+ISA+ YR+NS+SQIYLRRT+  ESS
Sbjct: 1   MNRRVQFSHKQRANRTEQFHKYLKPGALAKIRDSRISARLYRYNSLSQIYLRRTASPESS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           PL + GQSEID VDDFPSL GRVYGPLCLKRKK + IKSTWFPSPNLQTPT DL+ D II
Sbjct: 61  PLSSIGQSEID-VDDFPSLSGRVYGPLCLKRKKFSGIKSTWFPSPNLQTPTADLSGDSII 120

Query: 121 DVFNSDVAAH 131
           D FNSDVAAH
Sbjct: 121 DAFNSDVAAH 129

[Close]

BLAST of Clc02G08865 vs. ExPASy TrEMBL
Match: A0A2P5EE91 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_203870 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 4.2e-23
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RR ++  +S  +RTE F KYLKPGALA +RDS+ISA+ +R  S++QI   R+S   S 
Sbjct: 1   MNRRTRAIHRSSPSRTEPFLKYLKPGALAQIRDSRISARSHRVVSLAQI---RSSQPSSP 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           P  T GQ  +  +D FP   GRV+GP C +RKKL A K+  FPS N  +P  D   DPI+
Sbjct: 61  PPSTPGQLSVAAMDGFPCFSGRVFGPRCPQRKKLVASKAVLFPSQNPSSPVLD-AADPIM 120

Query: 121 DVFNSDVAAH 131
           DVF++D+AAH
Sbjct: 121 DVFSTDIAAH 126

[Close]

BLAST of Clc02G08865 vs. ExPASy TrEMBL
Match: A0A7J6GIE5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015480 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.2e-23
Identity = 70/131 (53.44%), Postives = 85/131 (64.89%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RR +S  +S  NR E F KYLKPGALA +RDS+ISA+ +RF SI+QI     S   SS
Sbjct: 1   MNRRTRSLHRSSPNRAEPFLKYLKPGALAQIRDSRISARSHRFLSIAQI----RSSPPSS 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           P  T GQS +  +D FP   GR++ P C +RKKL A KS  FPS N  +P  D   DPII
Sbjct: 61  PSSTPGQSTVIAMDGFPCFSGRMFVPRCPQRKKLVASKSVLFPSQNPSSPVLD-AADPII 120

Query: 121 DVF-NSDVAAH 131
           DVF +SD+AAH
Sbjct: 121 DVFSSSDIAAH 126

[Close]

BLAST of Clc02G08865 vs. ExPASy TrEMBL
Match: W9RNW7 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002813 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 67/130 (51.54%), Postives = 83/130 (63.85%), Query Frame = 0


Query: 1   MKRRVQSSPKSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESS 60
           M RR ++  +S  +RTE F KYLKPGALA +RDS+ISA+ +R  ++SQI   R S   S 
Sbjct: 1   MNRRTRAVHRSSPSRTEPFLKYLKPGALARIRDSRISARSHRAIALSQI---RLSPPSSP 60

Query: 61  PLPTTGQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWFPSPNLQTPTTDLTRDPII 120
           P PT GQ  + ++D FP    R YGP C +RKKL A KS  FPS    +P  D   DPII
Sbjct: 61  PPPTPGQLPVSVMDVFPCFSPRFYGPRCPQRKKLVASKSVLFPSQTPSSPVLD-APDPII 120

Query: 121 DVFNSDVAAH 131
           DVF SD+AAH
Sbjct: 121 DVFGSDIAAH 126

[Close]

BLAST of Clc02G08865 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-10
Identity = 45/126 (35.71%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 10  KSYTNRTEQFHKYLKPGALALMRDSQISAK----WYRFNSISQIYLRRTSLLESSPLPTT 69
           KS   R++ FH+YLKPGALA +R+S+I+A+        +S+SQ+ +   S  E+S     
Sbjct: 6   KSPARRSDGFHRYLKPGALAQIRNSRINARSTTSLVSRSSLSQL-VDPISPSENSVDEAA 65

Query: 70  GQSEIDMVDDFPSLVGRVYGPLCLKRKKLAAIKS-TWFPSPNLQTPTTDLTRDPIIDVFN 129
             S    +D  P L+ ++YGP   +RKKLAA +S +     N+  P   +  +P     +
Sbjct: 66  AASRNLTIDQVPHLLRKIYGPYSYQRKKLAAARSVSSMMMMNINPPINSVLVEP-----S 125

Query: 130 SDVAAH 131
           SDV AH
Sbjct: 126 SDVIAH 125

[Close]

BLAST of Clc02G08865 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 5.0e-08
Identity = 32/100 (32.00%), Postives = 49/100 (49.00%), Query Frame = 0


Query: 10  KSYTNRTEQFHKYLKPGALALMRDSQISAKWYRFNSISQIYLRRTSLLESSPLPTTGQSE 69
           +S   R + FH+Y+KPGALA +R+++I+     F     +         SS  P     +
Sbjct: 35  RSPVRRNDGFHRYMKPGALAQIRNARINNARSNFPLTRSLSDPVDPPSSSSESPIAATPQ 94

Query: 70  IDMVDDFPSLVGRVYGPLCLKRKKLAAIKSTWF---PSPN 107
              +D  P L+ ++YGP  + RKKL   +S      PSPN
Sbjct: 95  TITMDQMPHLLSKIYGPYRIGRKKLGPARSAMVKLNPSPN 134

The following BLAST results are available for this feature:

BLAST of Clc02G08865 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902395.1	1.6e-56	83.85	uncharacterized protein LOC120089036 [Benincasa hispida]	[more]
XP_023513131.1	9.9e-51	81.54	uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo]	[more]
XP_022986202.1	7.1e-49	79.23	uncharacterized protein LOC111484017 [Cucurbita maxima]	[more]
XP_022944248.1	1.3e-47	77.69	uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothet...	[more]
PON83836.1	8.8e-23	50.00	hypothetical protein TorRG33x02_203870 [Trema orientale]	[more]

BLAST of Clc02G08865 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G08865 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6X7	3.5e-49	79.23	uncharacterized protein LOC111484017 OS=Cucurbita maxima OX=3661 GN=LOC111484017...	[more]
A0A6J1FXV4	6.5e-48	77.69	uncharacterized protein LOC111448755 OS=Cucurbita moschata OX=3662 GN=LOC1114487...	[more]
A0A2P5EE91	4.2e-23	50.00	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_203870 PE=4 SV...	[more]
A0A7J6GIE5	7.2e-23	53.44	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015480 PE=4 SV=1	[more]
W9RNW7	9.5e-23	51.54	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002813 PE=4 SV=1	[more]

BLAST of Clc02G08865 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54970.1	1.8e-10	35.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G26960.1	5.0e-08	32.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35495:SF10	SUBFAMILY NOT NAMED	coord: 1..130
None	No IPR available	PANTHER	PTHR35495	OS06G0679600 PROTEIN	coord: 1..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G08865.1	Clc02G08865.1	mRNA