Clc02G08710 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G08710
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
LocationClcChr02: 10509945 .. 10515008 (+)
RNA-Seq ExpressionClc02G08710
SyntenyClc02G08710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAGAGGACATAATTCTGGTAGAGTGTATGGTACGATATGTGCAGTTTGGACATTGGCGAGCTAACAACGACACATTTCGACCTAGTTTTTTGGTGAATGTGTTGAGGATGATGCAACAAAATATTCCAGAGTGTTCCATACAGGTAAGCCACAATCTAGGGTTTTGGATGAGGATGTTGAAGAGACAATATAGCACGATTGTTGAAATGTTGGGCCCATGATGTAGTGGGTTCGGTTGGAATACAGAGTGGAAATGTATTGACTGTGAGCCCGAGATATTTGACGTGTGAGTCAGGTTAATGAAGAAATTTAGTATTTGTTTTATATTATTTTAAATATATTTTAGGAGAAACATAACACATTTCACTTGATGTAGTGTCATCCAAGTGCCAAAGAACTTAGGCATAAGTCATTTCCATTCTATGATGACCCGACGATTGTCTTTAGCAAAGACAGAGCAATAGGGAGTCGTGCCACTACCATTGCTGAGGTCAGATCAGAACCTATAATGGACGAGGAAAACGACGACATTTTAAATAACTAATCCCCAAACTTTGATAATTTCTACATCCCTGATCCACCGTTCATCAAATCTCCCACACCAGAAGACTTTCAATCTACCCTGGACGGTAGAGGGGCTGGGAGCAGCATGCCAACAAGAAATATGAGGTCTTGTTTGTCAATTGGAGAATACAATGAAGTCGTACAAGAGGGCTTTCAACTTTTAACTAAGTCTATTAACGGGATTGCACAATGGCCTATCGTGAATGATGACCTGACAAGGCATCATCATAGAGAATTGTACGCTGAGCTAGAGCTATAGTTAATCCCTGGACTGTCAATGCAAGATGGCTTAACTGTTGCACAGTTGATGCACACTTTCCGTGTTAACGCAAGTGTATGGGTTAAGTTATAATATAAGACGGTTAAGTCCGAATATCGTTTCATTAAGGATCCAATTGTAAAGGTTTAAGTTATTTAGCTATTCTAGAGTTGAATAAATTTTATTTGAGGATTGAAATTTAAGTTGTGATTTTAGAAAAACTGAAAAGGAAAGCAGCAAGTAAAGAAGAAACACAAGAGTCAAAGAGAGTTCTAGGGTAATGAATCCTTGTTTACTTCATCATGCAATATTCTAAGGTTCATGGATTTCATTGCAGTTCTTATGCTTAAGTTTAGTAACATAAATCCAAGTTATTTTCTCTAAAAAACAACCTTTTCTCATGCAACTCAATTGATTACTAATTTCTTGAAATCAATGCAAATTACATGGCATTAAGAGTAGTCTTTAGCAACTTTTATTGTCAACCTAACTATTTTCATAATAGATTAACAACAATTCTTTGTTATAGATCTAGTTAGACATACAATTATCTCAACCATACATCTAACCTAACATTCAAACATGGCCATTCAACAAGAATTTAAGCACAATAACAAGGAAAAGCATAATCATTGCAACAAAACCATGAAGAGTCTACAATATCAACAAAACTTCATAAACAATTCATCAAAACCCTAAAACTAAAGAGTCTAGCCACTCATAGCCTCAAGCAACATGTTCATAATATAAACAAAGAAAGAGTGTAAAGAAAGGGAAACTCTACTAAAAAGAGGCTCTTGATTGAGGAAGCACTGTCAAGATGTCCTTGGTCTTCACGTCGGAACTCGAACAGCACCATTGTTTTTATTTTATGTTTGTATGAATTGTTTTGAAAAACTACTGTTTTTGTTTTATGTTTGTACTTAAGTGTTCTAAAAAAGTGTCCAAGTCACACTTTGCCTAAGCCTCACTTTGACCCTCAAAACCACCTAAAATGTTCCTAAAAGGTAGCTAAGTCCCTCTTTGTCAATGAAAACCATGTAAAAGGTCCTAAAAAGTGCCTAAGTAACACTCTTTCTCTAAAAATGAACGTGCATTTGTTGTAGTGCTTGAACTATCGACTAAAGCTAACGTTTATGTATTTTGAATTTCATATGCTAGACTTTTTGTTTTTCTAAAGTTGTTTCAATTCCCGTTCTAAATTTCATGAAAGTAGAATTTTATATAGTATCACGAGCTTAGATAATATGGTGTAGAAAACAGATATAGAAAAAAAAAACAGTCAAGATAATAATGATAAAAAAATAGTCAAACTCTACCTAAACCCAACTTTGCAATCCAAACACTGTAATCAGAAACATAGTCAACCCAACCCTGCACTCCAAACACTGTAATCAGATTCCCAGTAATCCTGATTACAATCTAGCTCCCCAAACACCCCTTAATTAGCTATCCATTGCAATTACCCATTTATTAATGTTTTTCAAGGTTGGCCTGTGGGGGTCGCTAGAGGTGGTAGTTAAAGGTTGGACAGCGGGGGAAGGGGGAGGAGTCGCTGGAGGTTGGCTGGCGACAATCATCGGAGGTGGCTACCTGAGTTGGCCAGCGACGGTTGGAGTTTGTTGCCGACTGTTACTGGAGGTGACTGTTAGAGTTGATTGACGGCAGTCACTTGAGGTGGTTTTGAAAGTTGGCTAGCAAACTTCCTAAATTAAATTATAGGAAAAAAAAAAAAAAAGAAGGGTAACCCGTGAGTTTGAATAGTGTTTACTATTCAAACCTATGGGAAAAGATGTAGGAAGCCGAGCCCATCCAATCCCAAACCAGGGTTGGGCTTAGGATGCCTAACCCATCCAATCCCAATCCTTAAAACAAATAGTTTAGGGTTTTCGTTCTCTCGCCTCTTCGAAAACATTTTCATTCACGCAGGTCATCAAACCTCTCTCCATTTTCGTTCTGAAACTCCAAGGTATTCATTCTTCCCTTTTCGTTCTTCCCCTTAGGTCTTCGTCCATCTCTTCGTGTTTGATTTCTTGTCGCACTGTTGCAGGTTCCTTGAATCGGCCTTTTTCATTCACTCACCACCGTTGTATCCTCATCGCTGCCAATTCCTTGTGTTGCCGTTTTCGTTCACGTTGCCGCCTCTGTTTCCTCGCTAGTGCAAGTTAGCTCACATTTTTATTTTGGGATCTAATTTAGCTTAAGTTTGACAAAGAATAGGTTGAAATACTTTTTGGTTTTGGGGTTCTATCGCTAGTCCGTTGATAGTTCTAGAAGAAATTGCTAATTAGTGCCAACTTTTTATTTTGGGGGTATTCTCTATTAATATAATTAGTACTTGGTTATTGGTGATTTAAGTGACTTTTCTTTGGGTATGTTTAAGTTCCAACCACTGCTAATGCCACTTGATGCAAATTTTAATGCTAAAAATTTAAGTTATGCAATTGAAGATCTTGTATCTATATGTGGCACCAAGCTTCCCATCATACTCCAATCACCAAATTTCACCTAAAGCCATTGAAGATCATGTATCTATCTATTTAGTAAATGTAAATGCATACATTTACGTGAAATGCATGCATTGGAATTTTACATATATAAGAACTTAATTCTAAACTTTATGTTTAATCCTCTAAACTTGTGTGGAGGGGTGGGTTAAAAAAATGGTAGAAATTTTACTACACCTTTTTATTTTCTCATTGTAGTTCTTATTATGGATCATCATTATTCATAATCTTTTCTTACTTGATTTACACTCAGGGATAAATTATAGATGCCCAAGAGTAGATTATCCAAAGATTAGAGTTGGGTGATAGAGGCTTCTTTTCTTCGGTGTCGTTTTAATTCCCAAAGAGAATTCTATCAAAAGAAATATATAGTACCGAATCCAATTCCTATTACTACGATGGCGTAGTAACAGTGGCAAGTCTAGGTCGAACCACATGGACAATATAGGTTGAACCACAGGGACAATAGTCTTTGTTTCGCTAAGCTAATTTCCTAATTAAAGCAATAAATGGGGGGGGGGGGGGGGGGGAGGTTGTGTGAATTAGAAATAGGCATGAAAAAGAAATTAAAAGCAACGAGTAAGTGTAAACAGGGATAAGATAATCAAGTTCTCAAGATCAATTGGATTCCTATACAATCTCTATCACCAACTTATTTTTTATTAAAAACATATTAGATTGCTTACACACCAACTTATTTAACTTAATTAAATTAACCAACGCTACAGGCAGCCAACCAATCGAATTAAGATAAACAGGCGCCCTAATTATCAATTAAAGTCTAAACCTCAATAGAACTACAAGCCTTGGGTCCTAATTGAGTTCGATAGCGATCAATTAAGGCCAAGAACAAGTGCATTAAGCTTAAGAATTCCAGTGTGCGATTAATTAATGGAAAAATCCTAAATTAATTAATCAATTTTTCATTGAACCTAGGTTAAGCATACATTCTAAGCTATGGACAATCAATACACCTAGCATGCATACTAATGCCCTTGCCACTTAACGATTTTAGCATAGACGAACACAAAGGAAACGCGCGAGCAAAATCGATTAGCCAAGACATATATTCAAGGGGAGGGGCGTCAATCCATCCAAAAATATACATCTAAATTTACACAAGATTCAAAGAACACAACCATAATATGAAATTTATACAAAAATGAAATCAAAAATAATTACGTAGGATTGCTCTCAAGAACAAGAAATCTACTTACCTCAACATCTCCACAGACAAAGAAATTGAAGGAGAGAGCATCCAATCCATGCTACAACCCAAAATAAAATGAAAATCCTAAACTAAGAGGGTAGAATTATGAAGGAGAAGAAGAAATTTGGAAGAAATCCTTGGCCTCCATGAAATCCCACTTTATTTTTTCCTTCCCTAAACCCTAAAAATGAAGAGATTATTTATAGAATTGGGTAGAGCGTCGCTGCGCTCTTGGAAAGCATCGCGACACTCTAGGTAGAAGTCAAGCGCCTACCTAGAGGGTAGTGACGTTGTGCTCTCGCGCGCGCTCATCTTTGCGTGTCCGTCAATATTTGAAGCGCAGCTGCGCTCCAAGGGAATGTTGCTGGGTTCTCACCAATTTTCCTCTCGAGTCTCCAGCATAAAGCTAAGCGTAATGCTTAGTGAAGTTGCACTTTCCAGGGGCATTTTCGTCCTTTTCCACGTCCTTGAGCTCCTAGTGTCCAATTTCACTTCCGATAGCTCCAATCAACCCTGA

mRNA sequence

ATGGACAAAGAGGACATAATTCTGGTAGAGTGTATGGTACGATATGTGCAGTTTGGACATTGGCGAGCTAACAACGACACATTTCGACCTAGTTTTTTGGTGAATGTGTTGAGGATGATGCAACAAAATATTCCAGAGTGTTCCATACAGTGTCATCCAAGTGCCAAAGAACTTAGGCATAAGTCATTTCCATTCTATGATGACCCGACGATTGTCTTTAGCAAAGACAGAGCAATAGGGAGTCGTGCCACTACCATTGCTGAGGTTGGCCTGTGGGGGTCGCTAGAGGTGGTAGTTAAAGGTTGGACAGCGGGGGAAGGGGGAGGAGTCGCTGGAGGTTGGCTGGCGACAATCATCGGAGGTGGCTACCTGAGTTGGCCAGCGACGGTTGGAGTTTGTTGCCGACTGTTACTGGAGGTCATCAAACCTCTCTCCATTTTCGTTCTGAAACTCCAAGGTTCCTTGAATCGGCCTTTTTCATTCACTCACCACCGTTGTATCCTCATCGCTGCCAATTCCTTGTGTTGCCGTTTTCGTTCACGTTGCCGCCTCTGTTTCCTCGCTAGTGCAACGCAGCTGCGCTCCAAGGGAATGTTGCTGGGTTCTCACCAATTTTCCTCTCGAGTCTCCAGCATAAAGCTAAGCGTAATGCTTAGTGAAGTTGCACTTTCCAGGGGCATTTTCGTCCTTTTCCACGTCCTTGAGCTCCTAGTGTCCAATTTCACTTCCGATAGCTCCAATCAACCCTGA

Coding sequence (CDS)

ATGGACAAAGAGGACATAATTCTGGTAGAGTGTATGGTACGATATGTGCAGTTTGGACATTGGCGAGCTAACAACGACACATTTCGACCTAGTTTTTTGGTGAATGTGTTGAGGATGATGCAACAAAATATTCCAGAGTGTTCCATACAGTGTCATCCAAGTGCCAAAGAACTTAGGCATAAGTCATTTCCATTCTATGATGACCCGACGATTGTCTTTAGCAAAGACAGAGCAATAGGGAGTCGTGCCACTACCATTGCTGAGGTTGGCCTGTGGGGGTCGCTAGAGGTGGTAGTTAAAGGTTGGACAGCGGGGGAAGGGGGAGGAGTCGCTGGAGGTTGGCTGGCGACAATCATCGGAGGTGGCTACCTGAGTTGGCCAGCGACGGTTGGAGTTTGTTGCCGACTGTTACTGGAGGTCATCAAACCTCTCTCCATTTTCGTTCTGAAACTCCAAGGTTCCTTGAATCGGCCTTTTTCATTCACTCACCACCGTTGTATCCTCATCGCTGCCAATTCCTTGTGTTGCCGTTTTCGTTCACGTTGCCGCCTCTGTTTCCTCGCTAGTGCAACGCAGCTGCGCTCCAAGGGAATGTTGCTGGGTTCTCACCAATTTTCCTCTCGAGTCTCCAGCATAAAGCTAAGCGTAATGCTTAGTGAAGTTGCACTTTCCAGGGGCATTTTCGTCCTTTTCCACGTCCTTGAGCTCCTAGTGTCCAATTTCACTTCCGATAGCTCCAATCAACCCTGA

Protein sequence

MDKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVGLWGSLEVVVKGWTAGEGGGVAGGWLATIIGGGYLSWPATVGVCCRLLLEVIKPLSIFVLKLQGSLNRPFSFTHHRCILIAANSLCCRFRSRCRLCFLASATQLRSKGMLLGSHQFSSRVSSIKLSVMLSEVALSRGIFVLFHVLELLVSNFTSDSSNQP
Homology
[Close]
BLAST of Clc02G08710 vs. NCBI nr
Match: KAA0062548.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28770.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-15
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           KE+  LVEC++  V  G W+++N TFRP ++  ++RMM + +P C  Q HP+AK L +K 
Sbjct: 15  KEEGTLVECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGC--QSHPAAKGLLNKP 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +DRA G  A T A+VG
Sbjct: 75  FPYYDELTYVFGRDRATGRFAETFADVG 100

[Close]
BLAST of Clc02G08710 vs. NCBI nr
Match: KAA0064269.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           +E+  LVEC++  V  G W+++N TFRP +L  ++RMM + +PEC  Q HP+AK L +K 
Sbjct: 15  EEEGTLVECLMELVSMGGWKSDNCTFRPGYLTQLVRMMAEKLPEC--QSHPAAKGLLNKP 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +DRA G    T A+VG
Sbjct: 75  FPYYDELTYVFGRDRATGRFPETFADVG 100

[Close]
BLAST of Clc02G08710 vs. NCBI nr
Match: KAA0045644.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 1.5e-15
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           +E+  LVEC++  V  G W+++N TFRP +L  ++RMM +N+P C  Q HP+AK L +KS
Sbjct: 15  EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAENLPGC--QSHPAAKGLLNKS 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +DR     A T A+VG
Sbjct: 75  FPYYDELTYVFGRDRTTDRFAETFADVG 100

[Close]
BLAST of Clc02G08710 vs. NCBI nr
Match: TYK19767.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.4e-15
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 2   DKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ-CHPSAKELRH 61
           +KE+  LVEC+V+ V    WR++N TFR  +L  V RMM + +  C+IQ  HP+AK L +
Sbjct: 52  NKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGSHPAAKGLLN 111

Query: 62  KSFPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           K+FP+YDD T VF KDR +  R+ T A VG
Sbjct: 112 KTFPYYDDMTYVFGKDRTMEGRSETFAGVG 141

[Close]
BLAST of Clc02G08710 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-13
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ--------CHPS 62
           +E+  LVEC+V  V  G WR++N TFR  +L  + RMM + +P+ +IQ         HP+
Sbjct: 15  EEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEKLPDTNIQGSPTIDCRSHPA 74

Query: 63  AKELRHKSFPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           AK L HKSFP+YDD + VF  D A G+ + T A+ G
Sbjct: 75  AKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGG 110

[Close]
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match: A0A5A7V4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001290 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-16
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           KE+  LVEC++  V  G W+++N TFRP ++  ++RMM + +P C  Q HP+AK L +K 
Sbjct: 15  KEEGTLVECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGC--QSHPAAKGLLNKP 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +DRA G  A T A+VG
Sbjct: 75  FPYYDELTYVFGRDRATGRFAETFADVG 100

[Close]
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match: A0A5A7TRH0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G001560 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-16
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           +E+  LVEC++  V  G W+++N TFRP +L  ++RMM +N+P C  Q HP+AK L +KS
Sbjct: 15  EEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAENLPGC--QSHPAAKGLLNKS 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +DR     A T A+VG
Sbjct: 75  FPYYDELTYVFGRDRTTDRFAETFADVG 100

[Close]
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match: A0A5A7VFF9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G002340 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.4e-16
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           +E+  LVEC++  V  G W+++N TFRP +L  ++RMM + +PEC  Q HP+AK L +K 
Sbjct: 15  EEEGTLVECLMELVSMGGWKSDNCTFRPGYLTQLVRMMAEKLPEC--QSHPAAKGLLNKP 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +DRA G    T A+VG
Sbjct: 75  FPYYDELTYVFGRDRATGRFPETFADVG 100

[Close]
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match: A0A5D3D879 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1676G00020 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 0 

Query: 2   DKEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQ-CHPSAKELRH 61
           +KE+  LVEC+V+ V    WR++N TFR  +L  V RMM + +  C+IQ  HP+AK L +
Sbjct: 52  NKEEAKLVECLVKLVSSNGWRSDNGTFRLGYLAQVQRMMAEKLSGCNIQGSHPAAKGLLN 111

Query: 62  KSFPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           K+FP+YDD T VF KDR +  R+ T A VG
Sbjct: 112 KTFPYYDDMTYVFGKDRTMEGRSETFAGVG 141

[Close]
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match: A0A5A7UPF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00110 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 5.3e-14
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0 

Query: 3   KEDIILVECMVRYVQFGHWRANNDTFRPSFLVNVLRMMQQNIPECSIQCHPSAKELRHKS 62
           +E+  LVEC++  V    W++NN TFRPS+L  ++RMM + +P C  Q HP+AK L  KS
Sbjct: 15  EEEGTLVECLMELVSMRGWKSNNGTFRPSYLAQLVRMMVEKLPGC--QSHPAAKGLLKKS 74

Query: 63  FPFYDDPTIVFSKDRAIGSRATTIAEVG 91
           FP+YD+ T VF +++A+   A T  ++G
Sbjct: 75  FPYYDELTYVFDRNKAMDQFAETFTDMG 100

The following BLAST results are available for this feature:
BLAST of Clc02G08710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062548.11.2e-1547.73retrotransposon protein [Cucumis melo var. makuwa] >TYK28770.1 retrotransposon p... [more]
KAA0064269.11.5e-1547.73retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0045644.11.5e-1547.73retrotransposon protein [Cucumis melo var. makuwa][more]
TYK19767.13.4e-1548.89retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0031678.11.1e-1343.75retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
BLAST of Clc02G08710 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V4P85.6e-1647.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRH07.4e-1647.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VFF97.4e-1647.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8791.6e-1548.89Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UPF75.3e-1444.32Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of Clc02G08710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 49..89
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 3..49
coord: 49..89
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 3..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G08710.1Clc02G08710.1mRNA