Clc02G08420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G08420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr02: 9857923 .. 9859198 (-)
RNA-Seq Expression	Clc02G08420
Synteny	Clc02G08420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTCTTATGTGCAACTTGCGGTAGTTGTAACGTAAGCTAGTAGGCGAGACCTCTAAATTATTGTCGAATGAACATCAAGGCCTTGGGTACAAATTGTCAAGGGTCGATGTGACGAGTTTAGAGTGAGCATCGAGGCCTTGGGTACAAATGGCCAAAGGTCGATATGGAGTTCGGGATCTTGGGTACAAATGGCCAAGGATCGTGCACTAGAAAGTTGGGAAGAATTTGTTAGTTTTGTGTATGCAGTTATACCCTTGAATTCTATTATGTTGAACCTTACCCCAAGTTTGTTGTGTGCCTAGTTGCTTTATGTATATGTTGCATGATGTCCCTTCTAGTGGGCTACTTACCAGTGTAAGTGTATACTGACCTCCCCCTCCCCCCCCCCCCCCTCCTTTTTTTTAAATTAGAATTTGTAGGAAAGGACGGGTTGGTTGACTTTGGTGATGTCAAGGAAGAAACCTAAGAAAGAGGAGTATGTAGGTTGCTAATATATTTCTATTCTCTTGCTAGGAGTTTTTGTATTAGAACTTTTATCAATTGTTCTTTGCTTAATTTATGTACCTTGGGATGATGTGTTTATCTTGAGTTAGAACTTAGCTTAAATTGTTAAAGAGTTGTTTTTTTTTTCACCGTTGAGTTGTTATTCCATTAGTTTAAAAGATTGTGGTATTTCGAATGATCCTGTGTCGGGCTCTGATTCATTGTAGTGAGTGGAATGATTCTGTTGAGAAATAGTCGAGTTAAATGTTATTGAGAGTGTCTCTTAGAAACAGGTTATAGGAAAAATTTGGGAATTGTTGTGGTAGCGCCGTTATGATACTGAAATTTTTTTGAGCATAAAGGGTTAGTAACGTAAATGGTGATTTGAGTGCGGTGATGACCTAGGCTAGTTTAGAAATTTGGGATTGTTACAGTTGGTATCAGAGAGTGATCCAGTGTGAAAGGAAGTTTACCGAGTTGTCTCGTTTTGCACCCGACCTGGTGAGTATGTTAGAGAGGAAGATTCAAAGGTTCATCAGGGGCCTACATGAGGAAATCAGAGGTGCGGTCGCCTTAAAGGAGCCAACGACCTTTGCGGCAGCGATTGGGGCCGCCCTGATCATGGACAAAAACACGACCAAGAAACCTCAAGCGACACACTCACGTTGGGAGGCCAGCACCTCATTTGGATTTAAAAGGAAGTCTCCCCCAGCCCCGTCAGATCAAACTTCCAAGGCCCACCGTCCAACCTCGGGACAAGCTACCACCCTCCCATTGTGCGGCTCATGA

mRNA sequence

ATGTGGTCTTATGTGCAACTTGCGGTAGTTGTAACTTGGTATCAGAGAGTGATCCAGTGTGAAAGGAAGTTTACCGAGTTGTCTCGTTTTGCACCCGACCTGGTGAGTATGTTAGAGAGGAAGATTCAAAGGTTCATCAGGGGCCTACATGAGGAAATCAGAGGTGCGGTCGCCTTAAAGGAGCCAACGACCTTTGCGGCAGCGATTGGGGCCGCCCTGATCATGGACAAAAACACGACCAAGAAACCTCAAGCGACACACTCACGTTGGGAGGCCAGCACCTCATTTGGATTTAAAAGGAAGTCTCCCCCAGCCCCGTCAGATCAAACTTCCAAGGCCCACCGTCCAACCTCGGGACAAGCTACCACCCTCCCATTGTGCGGCTCATGA

Coding sequence (CDS)

ATGTGGTCTTATGTGCAACTTGCGGTAGTTGTAACTTGGTATCAGAGAGTGATCCAGTGTGAAAGGAAGTTTACCGAGTTGTCTCGTTTTGCACCCGACCTGGTGAGTATGTTAGAGAGGAAGATTCAAAGGTTCATCAGGGGCCTACATGAGGAAATCAGAGGTGCGGTCGCCTTAAAGGAGCCAACGACCTTTGCGGCAGCGATTGGGGCCGCCCTGATCATGGACAAAAACACGACCAAGAAACCTCAAGCGACACACTCACGTTGGGAGGCCAGCACCTCATTTGGATTTAAAAGGAAGTCTCCCCCAGCCCCGTCAGATCAAACTTCCAAGGCCCACCGTCCAACCTCGGGACAAGCTACCACCCTCCCATTGTGCGGCTCATGA

Protein sequence

MWSYVQLAVVVTWYQRVIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMDKNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS

Homology

[Close]

BLAST of Clc02G08420 vs. NCBI nr
Match: XP_022156992.1 (uncharacterized protein LOC111023821 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 8.2e-13
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q ERKFTELSRF    + + + KI +FI GLH EI+G + LKEPTT+AAA+  AL+MD
Sbjct: 191 VAQYERKFTELSRFRMQYIPIEQLKIDKFIDGLHREIKGLLVLKEPTTYAAAVRCALVMD 250

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS 130
           K   ++PQ   S+    +S G KRK     S Q S+ H+    + T  P+C S
Sbjct: 251 K-CLEEPQ---SQQVMGSSSGVKRKFASFSSSQPSRGHQHHVQRQTAPPVCPS 299

[Close]

BLAST of Clc02G08420 vs. NCBI nr
Match: XP_022156794.1 (uncharacterized protein LOC111023627 [Momordica charantia])

HSP 1 Score: 84.3 bits (207), Expect = 8.2e-13
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q E+KFTELS FA DL+   E+KI+RF++GL + IRG V L+ PTT+A AI   L+MD
Sbjct: 3   VTQYEKKFTELSHFALDLIPTEEKKIKRFVKGLRKGIRGQVNLQRPTTYAEAIWGVLVMD 62

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKA 114
           K+ T K Q  H   E  +S G KRK+P    +Q  +A
Sbjct: 63  KDVTIKVQTPH---EIGSSLGVKRKTPTYFPNQPPRA 96

[Close]

BLAST of Clc02G08420 vs. NCBI nr
Match: XP_022151688.1 (uncharacterized protein LOC111019603 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q E+KFTE SRFA DL+    RKI+RF+RGL + I+G + L+ PTT+A AI  AL+MD
Sbjct: 175 VAQYEKKFTEFSRFALDLIPTEARKIKRFVRGLWKGIKGPIDLQRPTTYAEAIKGALVMD 234

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSK 113
           K+  +K Q    + +   S G KRK PP  S Q SK
Sbjct: 235 KDVIEKAQ---PQQKVGLSSGVKRKVPPISSSQPSK 267

[Close]

BLAST of Clc02G08420 vs. NCBI nr
Match: XP_022155872.1 (uncharacterized protein LOC111022885 [Momordica charantia])

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-12
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q ERKFTELSRFA +L+     KI+RF++GL + IRG V L+ P T+A A+  ALIMD
Sbjct: 60  VAQYERKFTELSRFARELIPTEAMKIKRFVKGLRKRIRGPVDLQRPATYAEAVRGALIMD 119

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS 130
           K+ + + Q      E  +S G KRK  PA +DQ  +A +  + Q    P+C S
Sbjct: 120 KDVSNRVQPL---VEVGSSSGVKRKVSPAYADQPFRAPQRPAQQQGLPPVCPS 169

[Close]

BLAST of Clc02G08420 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q ERKFTELSRF    +   + KI +FI GL  EI+G + LKEPTT+AAA+  AL+MD
Sbjct: 181 VAQYERKFTELSRFGMQYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMD 240

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS 130
           K   ++PQ   S+    +S G KRK     S Q S+ H+    + TT P C S
Sbjct: 241 K-CLEEPQ---SQQVIGSSSGVKRKFASFSSSQPSRGHQHNGQRQTTPPACPS 289

[Close]

BLAST of Clc02G08420 vs. ExPASy TrEMBL
Match: A0A6J1DUN2 (uncharacterized protein LOC111023627 OS=Momordica charantia OX=3673 GN=LOC111023627 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q E+KFTELS FA DL+   E+KI+RF++GL + IRG V L+ PTT+A AI   L+MD
Sbjct: 3   VTQYEKKFTELSHFALDLIPTEEKKIKRFVKGLRKGIRGQVNLQRPTTYAEAIWGVLVMD 62

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKA 114
           K+ T K Q  H   E  +S G KRK+P    +Q  +A
Sbjct: 63  KDVTIKVQTPH---EIGSSLGVKRKTPTYFPNQPPRA 96

[Close]

BLAST of Clc02G08420 vs. ExPASy TrEMBL
Match: A0A6J1DTE5 (uncharacterized protein LOC111023821 OS=Momordica charantia OX=3673 GN=LOC111023821 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.0e-13
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q ERKFTELSRF    + + + KI +FI GLH EI+G + LKEPTT+AAA+  AL+MD
Sbjct: 191 VAQYERKFTELSRFRMQYIPIEQLKIDKFIDGLHREIKGLLVLKEPTTYAAAVRCALVMD 250

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS 130
           K   ++PQ   S+    +S G KRK     S Q S+ H+    + T  P+C S
Sbjct: 251 K-CLEEPQ---SQQVMGSSSGVKRKFASFSSSQPSRGHQHHVQRQTAPPVCPS 299

[Close]

BLAST of Clc02G08420 vs. ExPASy TrEMBL
Match: A0A6J1DCW8 (uncharacterized protein LOC111019603 OS=Momordica charantia OX=3673 GN=LOC111019603 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-13
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q E+KFTE SRFA DL+    RKI+RF+RGL + I+G + L+ PTT+A AI  AL+MD
Sbjct: 175 VAQYEKKFTEFSRFALDLIPTEARKIKRFVRGLWKGIKGPIDLQRPTTYAEAIKGALVMD 234

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSK 113
           K+  +K Q    + +   S G KRK PP  S Q SK
Sbjct: 235 KDVIEKAQ---PQQKVGLSSGVKRKVPPISSSQPSK 267

[Close]

BLAST of Clc02G08420 vs. ExPASy TrEMBL
Match: A0A6J1DQJ4 (uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022885 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-13
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q ERKFTELSRFA +L+     KI+RF++GL + IRG V L+ P T+A A+  ALIMD
Sbjct: 60  VAQYERKFTELSRFARELIPTEAMKIKRFVKGLRKRIRGPVDLQRPATYAEAVRGALIMD 119

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS 130
           K+ + + Q      E  +S G KRK  PA +DQ  +A +  + Q    P+C S
Sbjct: 120 KDVSNRVQPL---VEVGSSSGVKRKVSPAYADQPFRAPQRPAQQQGLPPVCPS 169

[Close]

BLAST of Clc02G08420 vs. ExPASy TrEMBL
Match: A0A6J1DNV8 (uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022925 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.7e-13
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 17  VIQCERKFTELSRFAPDLVSMLERKIQRFIRGLHEEIRGAVALKEPTTFAAAIGAALIMD 76
           V Q ERKFTELSRF    +   + KI +FI GL  EI+G + LKEPTT+AAA+  AL+MD
Sbjct: 181 VAQYERKFTELSRFGMQYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMD 240

Query: 77  KNTTKKPQATHSRWEASTSFGFKRKSPPAPSDQTSKAHRPTSGQATTLPLCGS 130
           K   ++PQ   S+    +S G KRK     S Q S+ H+    + TT P C S
Sbjct: 241 K-CLEEPQ---SQQVIGSSSGVKRKFASFSSSQPSRGHQHNGQRQTTPPACPS 289

The following BLAST results are available for this feature:

BLAST of Clc02G08420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156992.1	8.2e-13	46.02	uncharacterized protein LOC111023821 [Momordica charantia]	[more]
XP_022156794.1	8.2e-13	49.48	uncharacterized protein LOC111023627 [Momordica charantia]	[more]
XP_022151688.1	1.1e-12	50.00	uncharacterized protein LOC111019603 [Momordica charantia]	[more]
XP_022155872.1	1.1e-12	45.13	uncharacterized protein LOC111022885 [Momordica charantia]	[more]
XP_022155925.1	1.4e-12	46.02	uncharacterized protein LOC111022925 [Momordica charantia]	[more]

BLAST of Clc02G08420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G08420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUN2	4.0e-13	49.48	uncharacterized protein LOC111023627 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DTE5	4.0e-13	46.02	uncharacterized protein LOC111023821 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DCW8	5.2e-13	50.00	uncharacterized protein LOC111019603 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DQJ4	5.2e-13	45.13	uncharacterized protein LOC111022885 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DNV8	6.7e-13	46.02	uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]

BLAST of Clc02G08420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G08420.1	Clc02G08420.1	mRNA