Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGTTTAGGAAGACCTCATTTGGTCCACTGCTGGACGTGGACCTGGTGTTCAATGGACAGCTATTCCATCACTTCTTGCTAAGGGAGATGAGGGAGGACAGCGCCGATTCAATCAGCTTCAACATTCTGGGGAAGAAGGTTACCTTCACCTAAGATGACTTCAATCTTATAACCGGGCTGTGGCTGACGAAAGAAACGGTCGAACGAGATACATGTAGTGAGAGACTATGGCGTCTCATCCTTGAACCTAGGGACCCGAATGATAAGAAGGAAAAAGTGGTCAAGGATGTCGAGGTTGCCTTCGAGAAGATAAAATCTACGAATGATCAAGACGCTGTGAAGGTAGCCCTCGCCCTATATATCGAGACAGTTATGATGGACAAACACAAGAAGACACAATTTGACATGAAGACTCTTGGGATTGTCGATGACTTTGAAGTCTTTGACAACTACGACTGGTTGTCTGTCTTCTTCAACCGATTGTTGACTAACATGAAGATTATCATGCGCGGAAAGAAAGAGGCGCACAATATCAAGAAGGCAGACAACCCCAAACACACCACATACTATTACATCAAATGA
mRNA sequence
ATGAAGATGTTTAGGAAGACCTCATTTGGTCCACTGCTGGACGTGGACCTGGTGTTCAATGGACAGCTATTCCATCACTTCTTGCTAAGGGAGATGAGGGAGGACAGCGCCGATTCAATCAGCTTCAACATTCTGGGGAAGAAGGAAAAAGTGGTCAAGGATGTCGAGGTTGCCTTCGAGAAGATAAAATCTACGAATGATCAAGACGCTGTGAAGGTAGCCCTCGCCCTATATATCGAGACAGTTATGATGGACAAACACAAGAAGACACAATTTGACATGAAGACTCTTGGGATTGTCGATGACTTTGAAGTCTTTGACAACTACGACTGGTTGTCTGTCTTCTTCAACCGATTGTTGACTAACATGAAGATTATCATGCGCGGAAAGAAAGAGGCGCACAATATCAAGAAGGCAGACAACCCCAAACACACCACATACTATTACATCAAATGA
Coding sequence (CDS)
ATGAAGATGTTTAGGAAGACCTCATTTGGTCCACTGCTGGACGTGGACCTGGTGTTCAATGGACAGCTATTCCATCACTTCTTGCTAAGGGAGATGAGGGAGGACAGCGCCGATTCAATCAGCTTCAACATTCTGGGGAAGAAGGAAAAAGTGGTCAAGGATGTCGAGGTTGCCTTCGAGAAGATAAAATCTACGAATGATCAAGACGCTGTGAAGGTAGCCCTCGCCCTATATATCGAGACAGTTATGATGGACAAACACAAGAAGACACAATTTGACATGAAGACTCTTGGGATTGTCGATGACTTTGAAGTCTTTGACAACTACGACTGGTTGTCTGTCTTCTTCAACCGATTGTTGACTAACATGAAGATTATCATGCGCGGAAAGAAAGAGGCGCACAATATCAAGAAGGCAGACAACCCCAAACACACCACATACTATTACATCAAATGA
Protein sequence
MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILGKKEKVVKDVEVAFEKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK
Homology
BLAST of Clc02G08310 vs. NCBI nr
Match:
WP_217833200.1 (DUF1985 domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 184.9 bits (468), Expect = 5.2e-43
Identity = 105/171 (61.40%), Postives = 114/171 (66.67%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILG-------------- 60
M+MFRKTSFGPLLDVDLVFNGQLFHHFLLRE+REDS ++ISFNILG
Sbjct: 1 MEMFRKTSFGPLLDVDLVFNGQLFHHFLLREVREDSTNAISFNILGKKVTFTQYDFNLVT 60
Query: 61 ------------------------------KKEKVVKDVEVAFEKIKSTNDQDAVKVALA 120
KKEK+VKDVEVAFEK TNDQDAVKV LA
Sbjct: 61 RLWSMEETVDRDTCGERLRRLILGPRDPNDKKEKLVKDVEVAFEKTIFTNDQDAVKVGLA 120
Query: 121 LYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIM 128
LYIE VMM K KKTQF+MK LGIVD+FEVF NYDW SVFFN LL++MK IM
Sbjct: 121 LYIEIVMMGKDKKTQFNMKILGIVDNFEVFANYDWSSVFFNCLLSSMKTIM 171
BLAST of Clc02G08310 vs. NCBI nr
Match:
XP_038904329.1 (uncharacterized protein LOC120090683 [Benincasa hispida])
HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 94/156 (60.26%), Postives = 115/156 (73.72%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILGK-----KEKVVKDV 60
M+MF+ T FGPLLDVDLVFNGQ FHHFLLRE+ + + D ISFNILGK K+ KDV
Sbjct: 33 MRMFKTTPFGPLLDVDLVFNGQHFHHFLLREVTDANLDVISFNILGKKDLNDKDSSCKDV 92
Query: 61 EVAFEKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVF 120
E AFEK ND+DAVKVAL L+I+ VM+ K KK QFD+KT G+V+D EVF +YDW ++F
Sbjct: 93 ENAFEKSTFINDEDAVKVALTLFIKMVMIGKDKKIQFDVKTFGVVNDPEVFRHYDWSAIF 152
Query: 121 FNRLLTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
F R L +MK IM GKKEAH KK +N + +YY I+
Sbjct: 153 FKRTLNSMKTIMHGKKEAHETKKVENAHYASYYRIE 188
BLAST of Clc02G08310 vs. NCBI nr
Match:
XP_038875100.1 (uncharacterized protein LOC120067628 [Benincasa hispida])
HSP 1 Score: 174.9 bits (442), Expect = 5.4e-40
Identity = 101/194 (52.06%), Postives = 119/194 (61.34%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILGKK------------ 60
M+MFR T FGPLLDVDLVFNG+LF+HFLLRE+ + + D I+FNIL KK
Sbjct: 1 MRMFRTTIFGPLLDVDLVFNGKLFYHFLLREVTDANPDVIAFNILKKKVKFFQDDFNLIT 60
Query: 61 -----EKVV--------------------------KDVEVAFEKIKSTNDQDAVKVALAL 120
+K+V KDVE AF+K+ TND+D VKVALAL
Sbjct: 61 GLWSTKKIVERETSDERLRQLILRPKDPNDKDSSCKDVENAFKKLTFTNDEDVVKVALAL 120
Query: 121 YIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIMRGKKEAHNIK 152
+IE VM++K KKT FD+KT GIVDD EVF +YDWLSVFF R L MK M GKKEAH
Sbjct: 121 FIEIVMIEKDKKTLFDVKTFGIVDDPEVFRHYDWLSVFFKRTLNIMKTNMHGKKEAHETN 180
BLAST of Clc02G08310 vs. NCBI nr
Match:
KAA0067199.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])
HSP 1 Score: 161.8 bits (408), Expect = 4.7e-36
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
++MF KT FGPLL+ +VFNGQL H+FLLR+M ED +AD I F++LGK E F
Sbjct: 33 LQMFDKTIFGPLLNASMVFNGQLIHYFLLRQMPEDGNADGICFSVLGKNE--------IF 92
Query: 61 EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
+ +STND DA+KVALA++IETVM+ K KKTQFDM LG VDD E F+++DW + F+ RL
Sbjct: 93 KNFESTNDDDALKVALAVFIETVMVRKDKKTQFDMDILGRVDDEEAFNSFDWSTFFYTRL 152
Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
L N+K ++GKKEA+ +KK + K YY IK
Sbjct: 153 LNNLKTSLQGKKEAYELKKTTSSKAVAYYNIK 176
BLAST of Clc02G08310 vs. NCBI nr
Match:
KAA0056670.1 (MuDRA-like transposase [Cucumis melo var. makuwa])
HSP 1 Score: 156.4 bits (394), Expect = 2.0e-34
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
++MF KT FG LL+V++VFNGQL HHFLLR++ ED +A+ I F++LGK E F
Sbjct: 893 LQMFDKTIFGSLLNVNMVFNGQLIHHFLLRQIPEDGNANGICFSVLGKNE--------IF 952
Query: 61 EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
+ + TND DAVKVALA++IETVM+ K KKTQFDM LG VDD E F ++DW + F+ RL
Sbjct: 953 KNFEFTNDDDAVKVALAVFIETVMVGKDKKTQFDMDILGRVDDKEAFKSFDWSTFFYTRL 1012
Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
L ++K ++GKKEA+ +KK + K +YY IK
Sbjct: 1013 LNSLKTSLQGKKEAYELKKTTSSKAVSYYNIK 1036
BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match:
A0A5A7VPQ0 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00010 PE=4 SV=1)
HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
++MF KT FGPLL+ +VFNGQL H+FLLR+M ED +AD I F++LGK E F
Sbjct: 33 LQMFDKTIFGPLLNASMVFNGQLIHYFLLRQMPEDGNADGICFSVLGKNE--------IF 92
Query: 61 EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
+ +STND DA+KVALA++IETVM+ K KKTQFDM LG VDD E F+++DW + F+ RL
Sbjct: 93 KNFESTNDDDALKVALAVFIETVMVRKDKKTQFDMDILGRVDDEEAFNSFDWSTFFYTRL 152
Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
L N+K ++GKKEA+ +KK + K YY IK
Sbjct: 153 LNNLKTSLQGKKEAYELKKTTSSKAVAYYNIK 176
BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match:
A0A5A7UNM0 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G002030 PE=4 SV=1)
HSP 1 Score: 156.4 bits (394), Expect = 9.6e-35
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
++MF KT FG LL+V++VFNGQL HHFLLR++ ED +A+ I F++LGK E F
Sbjct: 893 LQMFDKTIFGSLLNVNMVFNGQLIHHFLLRQIPEDGNANGICFSVLGKNE--------IF 952
Query: 61 EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
+ + TND DAVKVALA++IETVM+ K KKTQFDM LG VDD E F ++DW + F+ RL
Sbjct: 953 KNFEFTNDDDAVKVALAVFIETVMVGKDKKTQFDMDILGRVDDKEAFKSFDWSTFFYTRL 1012
Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
L ++K ++GKKEA+ +KK + K +YY IK
Sbjct: 1013 LNSLKTSLQGKKEAYELKKTTSSKAVSYYNIK 1036
BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match:
A0A5A7V5G9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00730 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 80/152 (52.63%), Postives = 107/152 (70.39%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
++MF KT FGPLL+V++VFNGQL HHFLLR++ ED +AD I F++LGK
Sbjct: 630 LQMFDKTIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGK------------ 689
Query: 61 EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
+ TND DAVK+ALA++IETVM+ K KKTQFDM LG VDD E F ++DW + F+ RL
Sbjct: 690 NNFEFTNDDDAVKIALAVFIETVMVGKDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRL 749
Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
L ++K ++GKKEA+ +KK + K +YY IK
Sbjct: 750 LNSLKTSLQGKKEAYELKKTTSSKAVSYYNIK 769
BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match:
A0A5A7UGN1 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001710 PE=3 SV=1)
HSP 1 Score: 154.1 bits (388), Expect = 4.8e-34
Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
++MF K FGPLL+V++VFNGQL HHFLLR++ ED +AD I F++LGK
Sbjct: 569 LQMFEKIIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGK------------ 628
Query: 61 EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
+ TND DAVKVALA++IETVM+ K KKTQFDM LG VDD E F ++DW + F+ RL
Sbjct: 629 NNFEFTNDDDAVKVALAVFIETVMLGKDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRL 688
Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
L ++K ++GKKEA+ +KK + K +YY IK
Sbjct: 689 LNSLKTSLQGKKEANELKKTRSSKAVSYYNIK 708
BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match:
A0A5A7V5S4 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00710 PE=3 SV=1)
HSP 1 Score: 150.2 bits (378), Expect = 6.9e-33
Identity = 83/193 (43.01%), Postives = 115/193 (59.59%), Query Frame = 0
Query: 1 MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVK------ 60
++MF KT FGPLL+V++VFNGQL HHFLLR++ ED +AD I F++LGK + +
Sbjct: 506 LQMFEKTIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGKNVRFTQKEFNII 565
Query: 61 -----------------------------------DVEVAFEKIKSTNDQDAVKVALALY 120
++E F+ + TND DAVKVALA++
Sbjct: 566 TGLWPTNNPLEKDCDSKRLQSLLFGSENKKLITCLEIEEIFKNFEFTNDDDAVKVALAVF 625
Query: 121 IETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIMRGKKEAHNIKK 152
IETVM++K KKTQFDM LG VDD E F ++DW + F+ RLL ++K ++GKKEA+ +KK
Sbjct: 626 IETVMVEKDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKK 685
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VPQ0 | 2.3e-36 | 54.61 | Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G... | [more] |
A0A5A7UNM0 | 9.6e-35 | 53.29 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... | [more] |
A0A5A7V5G9 | 1.6e-34 | 52.63 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... | [more] |
A0A5A7UGN1 | 4.8e-34 | 52.63 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... | [more] |
A0A5A7V5S4 | 6.9e-33 | 43.01 | MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7... | [more] |
Match Name | E-value | Identity | Description | |