Clc02G08310 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G08310
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUlp1-like peptidase
LocationClcChr02: 9558399 .. 9558986 (-)
RNA-Seq ExpressionClc02G08310
SyntenyClc02G08310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGTTTAGGAAGACCTCATTTGGTCCACTGCTGGACGTGGACCTGGTGTTCAATGGACAGCTATTCCATCACTTCTTGCTAAGGGAGATGAGGGAGGACAGCGCCGATTCAATCAGCTTCAACATTCTGGGGAAGAAGGTTACCTTCACCTAAGATGACTTCAATCTTATAACCGGGCTGTGGCTGACGAAAGAAACGGTCGAACGAGATACATGTAGTGAGAGACTATGGCGTCTCATCCTTGAACCTAGGGACCCGAATGATAAGAAGGAAAAAGTGGTCAAGGATGTCGAGGTTGCCTTCGAGAAGATAAAATCTACGAATGATCAAGACGCTGTGAAGGTAGCCCTCGCCCTATATATCGAGACAGTTATGATGGACAAACACAAGAAGACACAATTTGACATGAAGACTCTTGGGATTGTCGATGACTTTGAAGTCTTTGACAACTACGACTGGTTGTCTGTCTTCTTCAACCGATTGTTGACTAACATGAAGATTATCATGCGCGGAAAGAAAGAGGCGCACAATATCAAGAAGGCAGACAACCCCAAACACACCACATACTATTACATCAAATGA

mRNA sequence

ATGAAGATGTTTAGGAAGACCTCATTTGGTCCACTGCTGGACGTGGACCTGGTGTTCAATGGACAGCTATTCCATCACTTCTTGCTAAGGGAGATGAGGGAGGACAGCGCCGATTCAATCAGCTTCAACATTCTGGGGAAGAAGGAAAAAGTGGTCAAGGATGTCGAGGTTGCCTTCGAGAAGATAAAATCTACGAATGATCAAGACGCTGTGAAGGTAGCCCTCGCCCTATATATCGAGACAGTTATGATGGACAAACACAAGAAGACACAATTTGACATGAAGACTCTTGGGATTGTCGATGACTTTGAAGTCTTTGACAACTACGACTGGTTGTCTGTCTTCTTCAACCGATTGTTGACTAACATGAAGATTATCATGCGCGGAAAGAAAGAGGCGCACAATATCAAGAAGGCAGACAACCCCAAACACACCACATACTATTACATCAAATGA

Coding sequence (CDS)

ATGAAGATGTTTAGGAAGACCTCATTTGGTCCACTGCTGGACGTGGACCTGGTGTTCAATGGACAGCTATTCCATCACTTCTTGCTAAGGGAGATGAGGGAGGACAGCGCCGATTCAATCAGCTTCAACATTCTGGGGAAGAAGGAAAAAGTGGTCAAGGATGTCGAGGTTGCCTTCGAGAAGATAAAATCTACGAATGATCAAGACGCTGTGAAGGTAGCCCTCGCCCTATATATCGAGACAGTTATGATGGACAAACACAAGAAGACACAATTTGACATGAAGACTCTTGGGATTGTCGATGACTTTGAAGTCTTTGACAACTACGACTGGTTGTCTGTCTTCTTCAACCGATTGTTGACTAACATGAAGATTATCATGCGCGGAAAGAAAGAGGCGCACAATATCAAGAAGGCAGACAACCCCAAACACACCACATACTATTACATCAAATGA

Protein sequence

MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILGKKEKVVKDVEVAFEKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK
Homology
BLAST of Clc02G08310 vs. NCBI nr
Match: WP_217833200.1 (DUF1985 domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 184.9 bits (468), Expect = 5.2e-43
Identity = 105/171 (61.40%), Postives = 114/171 (66.67%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILG-------------- 60
           M+MFRKTSFGPLLDVDLVFNGQLFHHFLLRE+REDS ++ISFNILG              
Sbjct: 1   MEMFRKTSFGPLLDVDLVFNGQLFHHFLLREVREDSTNAISFNILGKKVTFTQYDFNLVT 60

Query: 61  ------------------------------KKEKVVKDVEVAFEKIKSTNDQDAVKVALA 120
                                         KKEK+VKDVEVAFEK   TNDQDAVKV LA
Sbjct: 61  RLWSMEETVDRDTCGERLRRLILGPRDPNDKKEKLVKDVEVAFEKTIFTNDQDAVKVGLA 120

Query: 121 LYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIM 128
           LYIE VMM K KKTQF+MK LGIVD+FEVF NYDW SVFFN LL++MK IM
Sbjct: 121 LYIEIVMMGKDKKTQFNMKILGIVDNFEVFANYDWSSVFFNCLLSSMKTIM 171

BLAST of Clc02G08310 vs. NCBI nr
Match: XP_038904329.1 (uncharacterized protein LOC120090683 [Benincasa hispida])

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-42
Identity = 94/156 (60.26%), Postives = 115/156 (73.72%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILGK-----KEKVVKDV 60
           M+MF+ T FGPLLDVDLVFNGQ FHHFLLRE+ + + D ISFNILGK     K+   KDV
Sbjct: 33  MRMFKTTPFGPLLDVDLVFNGQHFHHFLLREVTDANLDVISFNILGKKDLNDKDSSCKDV 92

Query: 61  EVAFEKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVF 120
           E AFEK    ND+DAVKVAL L+I+ VM+ K KK QFD+KT G+V+D EVF +YDW ++F
Sbjct: 93  ENAFEKSTFINDEDAVKVALTLFIKMVMIGKDKKIQFDVKTFGVVNDPEVFRHYDWSAIF 152

Query: 121 FNRLLTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
           F R L +MK IM GKKEAH  KK +N  + +YY I+
Sbjct: 153 FKRTLNSMKTIMHGKKEAHETKKVENAHYASYYRIE 188

BLAST of Clc02G08310 vs. NCBI nr
Match: XP_038875100.1 (uncharacterized protein LOC120067628 [Benincasa hispida])

HSP 1 Score: 174.9 bits (442), Expect = 5.4e-40
Identity = 101/194 (52.06%), Postives = 119/194 (61.34%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMREDSADSISFNILGKK------------ 60
           M+MFR T FGPLLDVDLVFNG+LF+HFLLRE+ + + D I+FNIL KK            
Sbjct: 1   MRMFRTTIFGPLLDVDLVFNGKLFYHFLLREVTDANPDVIAFNILKKKVKFFQDDFNLIT 60

Query: 61  -----EKVV--------------------------KDVEVAFEKIKSTNDQDAVKVALAL 120
                +K+V                          KDVE AF+K+  TND+D VKVALAL
Sbjct: 61  GLWSTKKIVERETSDERLRQLILRPKDPNDKDSSCKDVENAFKKLTFTNDEDVVKVALAL 120

Query: 121 YIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIMRGKKEAHNIK 152
           +IE VM++K KKT FD+KT GIVDD EVF +YDWLSVFF R L  MK  M GKKEAH   
Sbjct: 121 FIEIVMIEKDKKTLFDVKTFGIVDDPEVFRHYDWLSVFFKRTLNIMKTNMHGKKEAHETN 180

BLAST of Clc02G08310 vs. NCBI nr
Match: KAA0067199.1 (Ulp1-like peptidase [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 4.7e-36
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
           ++MF KT FGPLL+  +VFNGQL H+FLLR+M ED +AD I F++LGK E         F
Sbjct: 33  LQMFDKTIFGPLLNASMVFNGQLIHYFLLRQMPEDGNADGICFSVLGKNE--------IF 92

Query: 61  EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
           +  +STND DA+KVALA++IETVM+ K KKTQFDM  LG VDD E F+++DW + F+ RL
Sbjct: 93  KNFESTNDDDALKVALAVFIETVMVRKDKKTQFDMDILGRVDDEEAFNSFDWSTFFYTRL 152

Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
           L N+K  ++GKKEA+ +KK  + K   YY IK
Sbjct: 153 LNNLKTSLQGKKEAYELKKTTSSKAVAYYNIK 176

BLAST of Clc02G08310 vs. NCBI nr
Match: KAA0056670.1 (MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 2.0e-34
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 0

Query: 1    MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
            ++MF KT FG LL+V++VFNGQL HHFLLR++ ED +A+ I F++LGK E         F
Sbjct: 893  LQMFDKTIFGSLLNVNMVFNGQLIHHFLLRQIPEDGNANGICFSVLGKNE--------IF 952

Query: 61   EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
            +  + TND DAVKVALA++IETVM+ K KKTQFDM  LG VDD E F ++DW + F+ RL
Sbjct: 953  KNFEFTNDDDAVKVALAVFIETVMVGKDKKTQFDMDILGRVDDKEAFKSFDWSTFFYTRL 1012

Query: 121  LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
            L ++K  ++GKKEA+ +KK  + K  +YY IK
Sbjct: 1013 LNSLKTSLQGKKEAYELKKTTSSKAVSYYNIK 1036

BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match: A0A5A7VPQ0 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G00010 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.3e-36
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
           ++MF KT FGPLL+  +VFNGQL H+FLLR+M ED +AD I F++LGK E         F
Sbjct: 33  LQMFDKTIFGPLLNASMVFNGQLIHYFLLRQMPEDGNADGICFSVLGKNE--------IF 92

Query: 61  EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
           +  +STND DA+KVALA++IETVM+ K KKTQFDM  LG VDD E F+++DW + F+ RL
Sbjct: 93  KNFESTNDDDALKVALAVFIETVMVRKDKKTQFDMDILGRVDDEEAFNSFDWSTFFYTRL 152

Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
           L N+K  ++GKKEA+ +KK  + K   YY IK
Sbjct: 153 LNNLKTSLQGKKEAYELKKTTSSKAVAYYNIK 176

BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match: A0A5A7UNM0 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G002030 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 9.6e-35
Identity = 81/152 (53.29%), Postives = 109/152 (71.71%), Query Frame = 0

Query: 1    MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
            ++MF KT FG LL+V++VFNGQL HHFLLR++ ED +A+ I F++LGK E         F
Sbjct: 893  LQMFDKTIFGSLLNVNMVFNGQLIHHFLLRQIPEDGNANGICFSVLGKNE--------IF 952

Query: 61   EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
            +  + TND DAVKVALA++IETVM+ K KKTQFDM  LG VDD E F ++DW + F+ RL
Sbjct: 953  KNFEFTNDDDAVKVALAVFIETVMVGKDKKTQFDMDILGRVDDKEAFKSFDWSTFFYTRL 1012

Query: 121  LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
            L ++K  ++GKKEA+ +KK  + K  +YY IK
Sbjct: 1013 LNSLKTSLQGKKEAYELKKTTSSKAVSYYNIK 1036

BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match: A0A5A7V5G9 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00730 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 80/152 (52.63%), Postives = 107/152 (70.39%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
           ++MF KT FGPLL+V++VFNGQL HHFLLR++ ED +AD I F++LGK            
Sbjct: 630 LQMFDKTIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGK------------ 689

Query: 61  EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
              + TND DAVK+ALA++IETVM+ K KKTQFDM  LG VDD E F ++DW + F+ RL
Sbjct: 690 NNFEFTNDDDAVKIALAVFIETVMVGKDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRL 749

Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
           L ++K  ++GKKEA+ +KK  + K  +YY IK
Sbjct: 750 LNSLKTSLQGKKEAYELKKTTSSKAVSYYNIK 769

BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match: A0A5A7UGN1 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G001710 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.8e-34
Identity = 80/152 (52.63%), Postives = 106/152 (69.74%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVKDVEVAF 60
           ++MF K  FGPLL+V++VFNGQL HHFLLR++ ED +AD I F++LGK            
Sbjct: 569 LQMFEKIIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGK------------ 628

Query: 61  EKIKSTNDQDAVKVALALYIETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRL 120
              + TND DAVKVALA++IETVM+ K KKTQFDM  LG VDD E F ++DW + F+ RL
Sbjct: 629 NNFEFTNDDDAVKVALAVFIETVMLGKDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRL 688

Query: 121 LTNMKIIMRGKKEAHNIKKADNPKHTTYYYIK 152
           L ++K  ++GKKEA+ +KK  + K  +YY IK
Sbjct: 689 LNSLKTSLQGKKEANELKKTRSSKAVSYYNIK 708

BLAST of Clc02G08310 vs. ExPASy TrEMBL
Match: A0A5A7V5S4 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00710 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.9e-33
Identity = 83/193 (43.01%), Postives = 115/193 (59.59%), Query Frame = 0

Query: 1   MKMFRKTSFGPLLDVDLVFNGQLFHHFLLREMRED-SADSISFNILGKKEKVVK------ 60
           ++MF KT FGPLL+V++VFNGQL HHFLLR++ ED +AD I F++LGK  +  +      
Sbjct: 506 LQMFEKTIFGPLLNVNMVFNGQLIHHFLLRQIPEDGNADGICFSVLGKNVRFTQKEFNII 565

Query: 61  -----------------------------------DVEVAFEKIKSTNDQDAVKVALALY 120
                                              ++E  F+  + TND DAVKVALA++
Sbjct: 566 TGLWPTNNPLEKDCDSKRLQSLLFGSENKKLITCLEIEEIFKNFEFTNDDDAVKVALAVF 625

Query: 121 IETVMMDKHKKTQFDMKTLGIVDDFEVFDNYDWLSVFFNRLLTNMKIIMRGKKEAHNIKK 152
           IETVM++K KKTQFDM  LG VDD E F ++DW + F+ RLL ++K  ++GKKEA+ +KK
Sbjct: 626 IETVMVEKDKKTQFDMDILGRVDDEEAFKSFDWSTFFYTRLLNSLKTSLQGKKEAYELKK 685

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833200.15.2e-4361.40DUF1985 domain-containing protein, partial [Synechococcus sp. PCC 7002][more]
XP_038904329.11.5e-4260.26uncharacterized protein LOC120090683 [Benincasa hispida][more]
XP_038875100.15.4e-4052.06uncharacterized protein LOC120067628 [Benincasa hispida][more]
KAA0067199.14.7e-3654.61Ulp1-like peptidase [Cucumis melo var. makuwa][more]
KAA0056670.12.0e-3453.29MuDRA-like transposase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VPQ02.3e-3654.61Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G... [more]
A0A5A7UNM09.6e-3553.29MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5A7V5G91.6e-3452.63MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1... [more]
A0A5A7UGN14.8e-3452.63MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2... [more]
A0A5A7V5S46.9e-3343.01MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold7... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G08310.1Clc02G08310.1mRNA