Clc02G08100 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G08100
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTransmembrane protein 18
LocationClcChr02: 9137855 .. 9139840 (-)
RNA-Seq ExpressionClc02G08100
SyntenyClc02G08100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTTCGTCGGTTTCTTCCACGCTATTGACTGGAAGGTAAAATTCACTCAAACCCCATCAAAAGACTTTTATCTTATTTTGCTTCTTTTTCGATCTTGTTTCCTGCTCTGTGGTTCTGTGAAGTTCTTTCTCAATTTGAGTATTGTTTTTATGTATTCTGTGACATTTTGCAGGAACCTTGGTTGATGGGATTATTGGGTTTTCATGGATTGTTGCTGATAATAACTATCTTTACCAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACGTATGATCTTTTCTCCTATTTGCTCTTTTTGCTGAAATGTAATGGCATTGTTCAAGGTTTTGCTATTTTGAGTTGTTTGATTGCTGTTCATATTGCATCCTGGCAAAGTAGTGAGTTATGGTCTAAGCAATCTTTATTAACTCTTGAGCTTAGAGATGGATTCTGAGCTTAGAATATCTTTTTGGAAATTATTTGCTGCATCAAGGTTGCAATTATATAGTTATGTGTGCATAATGTACATATTGCATCCTATGGTAGTGAGTTTTGCTCTAGCCATTTAAGGTATGGAAATATACTACCTCTTGAGCTTAAAGATGAACTCTGAGGTTTGAATGTATTTTTGGAGTCATGCTGCAAGGTTGCAATAATACAATCATATGATTACATGCAGGCTTCAGTTGTTGATTGATGTTTCTTATGTGTGTATGATTTCCAACCATAATGCTATTTGGTTTAACCTGGTTGCTTTTTATTTGACTATTTTAAATAAATAGTTCTCTCTCTTTTTCAATCTCTTTTGGCTTGTAGTAGGAAGTGTAAGGTGTATGATCAAATGTTGTCAATGTCATATATTTCAATTGTGTACTAGAAAGGAATCCCCTTGCATACCACTAAAATTCTCTCATGCTTGTGGTACATTTCAGATTTACATTTTACATGTTGATATGTACATCTTTCATGTATTTCAAGGAGAAGACCCCCTTTTTTGCATTCCACAGAAGTCCTTTCTTGTTCACATTCATATTTTGCAAGGAATACACATTTTCATGTACTTCTCAACTCTAATTGTTCTTCATTTCAAGGGATAAGAAATCCATATTTGGAGTACTTGTACACTTTAGAACTTAAAGGGCACAATTGTACAACTCATAGAACAGATCCTGTTCAAATAAGGTCACAAGTAGTTACATTTTTATTTGTCATGCAGTGGCTGGTGTATATTTTGCTGAAAGAATCAATAGAATCTTGGGCAAAAACTGGAAGAACTTCGCCACCCAGAACTATTTTGATCCAAATGGAGTTTTCTTATCAGCACTCTGGTCTGGGCCACTGCTTGTAATTTCAATGATAATCCTGGCAAGTGCTTGCTATTTCTTGTTTTCATCATGTCCATGGTAACCCCCCACCTCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAATAAAAAGAAAAAATGAAAAAGCTGGGATGAGTTATTTTTCTCTCATTTGTTTGTTATCTAGTTTTCTTTTCTGGGTTAGGAACACTTAACTGAACCCTCATTTCTGTATGACAGATAAACACGCTCTTTACGTTATGCTATCTAGTAGTCAGGTGGAAAAGAGCTGAGCTTCGACATCGCGCAAGACTTTCACAGAGTAAAGAAGATTGACCCTAAAAGAGAAGTTTTGAGCTTTGATGTCTTTTGCTGGTAGCTTGTAGCTGTGTATCTTATCCTTCAACAGAGATCGATGAACTGATACGAATACAATGCGAGGAGCGGGTTTGGTTATTCTTTTTTTTCTCTTATTTATTGACTAGAATCTCCATAGATATTATTGTGATCAACTTTATACGACATTCACTCACTTTATGTAGCTTGAATTTCATCAGCGAGTAA

mRNA sequence

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTTCGTCGGTTTCTTCCACGCTATTGACTGGAAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACGTATGATCTTTTCTCCTATTTGCTCTTTTTGCTGAAATGTAATGGCATTGTTCAAGTAGGAAGTGTAAGATTTACATTTTACATGTTGATATGTACATCTTTCATGTATTTCAAGGAGAAGACCCCCTTTTTTGCATTCCACAGAAGTCCTTTCTTGTTCACATTCATATTTTGCAAGGAATACACATTTTCATCTTGTAGCTGTGTATCTTATCCTTCAACAGAGATCGATGAACTGATACGAATACAATGCGAGGAGCGGGTTTGGTTATTCTTTTTTTTCTCTTATTTATTGACTAGAATCTCCATAGATATTATTGTGATCAACTTTATACGACATTCACTCACTTTATGTAGCTTGAATTTCATCAGCGAGTAA

Coding sequence (CDS)

ATGGAGGAGTTGAGATCTGCAATGGAAGAACATATGGACCAAATGGCGGATCTGATTCACAAACTTTCCTCCGAACTCCGATCCGGTCTCCGTCCCGCCGTTGATAATTTCGTCGGTTTCTTCCACGCTATTGACTGGAAGGAAGCGTACCAACTTTCAGATGTTCTTGTTCCTTCTTGCACGTATGATCTTTTCTCCTATTTGCTCTTTTTGCTGAAATGTAATGGCATTGTTCAAGTAGGAAGTGTAAGATTTACATTTTACATGTTGATATGTACATCTTTCATGTATTTCAAGGAGAAGACCCCCTTTTTTGCATTCCACAGAAGTCCTTTCTTGTTCACATTCATATTTTGCAAGGAATACACATTTTCATCTTGTAGCTGTGTATCTTATCCTTCAACAGAGATCGATGAACTGATACGAATACAATGCGAGGAGCGGGTTTGGTTATTCTTTTTTTTCTCTTATTTATTGACTAGAATCTCCATAGATATTATTGTGATCAACTTTATACGACATTCACTCACTTTATGTAGCTTGAATTTCATCAGCGAGTAA

Protein sequence

MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQLSDVLVPSCTYDLFSYLLFLLKCNGIVQVGSVRFTFYMLICTSFMYFKEKTPFFAFHRSPFLFTFIFCKEYTFSSCSCVSYPSTEIDELIRIQCEERVWLFFFFSYLLTRISIDIIVINFIRHSLTLCSLNFISE
Homology
[Close]
BLAST of Clc02G08100 vs. NCBI nr
Match: XP_023543279.1 (transmembrane protein 18 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------Q 60
          MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          
Sbjct: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLIGLLGFHGL 60

Query: 61 LSDVLVPSCTYDLFSYLLFLLKCNGI 78
          L  + + +  +  F   LFLL   G+
Sbjct: 61 LLIITIFTRKHTNFQMFLFLLALAGV 86

[Close]
BLAST of Clc02G08100 vs. NCBI nr
Match: KAG7033663.1 (Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------Q 60
          MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          
Sbjct: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61 LSDVLVPSCTYDLFSYLLFLLKCNGI 78
          L  + + +  +  F   LFLL   G+
Sbjct: 61 LLIITIFTRKHTNFQMFLFLLALAGV 86

[Close]
BLAST of Clc02G08100 vs. NCBI nr
Match: XP_022949841.1 (transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane protein 18 [Cucurbita maxima] >KAG6603481.1 Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------Q 60
          MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          
Sbjct: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61 LSDVLVPSCTYDLFSYLLFLLKCNGI 78
          L  + + +  +  F   LFLL   G+
Sbjct: 61 LLIITIFTRKHTNFQMFLFLLALAGV 86

[Close]
BLAST of Clc02G08100 vs. NCBI nr
Match: POO00221.1 (Transmembrane protein [Trema orientale])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL 53
          MEELRSAMEEHMDQMADL+HKLS+ELRSGLRPA +NF+GFFHAIDWKE + L
Sbjct: 1  MEELRSAMEEHMDQMADLVHKLSAELRSGLRPAYENFIGFFHAIDWKEPWLL 52

[Close]
BLAST of Clc02G08100 vs. NCBI nr
Match: XP_038900756.1 (transmembrane protein 18 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 2.3e-16
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY 51
          MEELRSAMEEHMDQMADLI K+SSELRSG+RPAVDNFVGFFHAIDWKE +
Sbjct: 1  MEELRSAMEEHMDQMADLIQKISSELRSGIRPAVDNFVGFFHAIDWKEPW 50

[Close]
BLAST of Clc02G08100 vs. ExPASy TrEMBL
Match: A0A6J1ISM9 (Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.5e-17
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------Q 60
          MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          
Sbjct: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61 LSDVLVPSCTYDLFSYLLFLLKCNGI 78
          L  + + +  +  F   LFLL   G+
Sbjct: 61 LLIITIFTRKHTNFQMFLFLLALAGV 86

[Close]
BLAST of Clc02G08100 vs. ExPASy TrEMBL
Match: A0A6J1GD63 (Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.5e-17
Identity = 52/86 (60.47%), Postives = 60/86 (69.77%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------Q 60
          MEELRSAMEEHMDQMADL+ KLSSELRSGLRPAVDNF+GFFHAIDWKE +          
Sbjct: 1  MEELRSAMEEHMDQMADLVQKLSSELRSGLRPAVDNFIGFFHAIDWKEPWLMGLLGFHGL 60

Query: 61 LSDVLVPSCTYDLFSYLLFLLKCNGI 78
          L  + + +  +  F   LFLL   G+
Sbjct: 61 LLIITIFTRKHTNFQMFLFLLALAGV 86

[Close]
BLAST of Clc02G08100 vs. ExPASy TrEMBL
Match: A0A2P5E5D7 (Transmembrane protein 18 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_003220 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL 53
          MEELRSAMEEHMDQMADL+HKLS+ELRSGLRPA +NF+GFFHAIDWKE + L
Sbjct: 1  MEELRSAMEEHMDQMADLVHKLSAELRSGLRPAYENFIGFFHAIDWKEPWLL 52

[Close]
BLAST of Clc02G08100 vs. ExPASy TrEMBL
Match: A0A2P5FR32 (Transmembrane protein 18 OS=Trema orientale OX=63057 GN=TorRG33x02_039990 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.1e-16
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQL 53
          MEELRSAMEEHMDQMADL+HKLS+ELRSGLRPA +NF+GFFHAIDWKE + L
Sbjct: 1  MEELRSAMEEHMDQMADLVHKLSAELRSGLRPAYENFIGFFHAIDWKEPWLL 52

[Close]
BLAST of Clc02G08100 vs. ExPASy TrEMBL
Match: A0A6J1DPY2 (Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.5e-16
Identity = 54/101 (53.47%), Postives = 65/101 (64.36%), Query Frame = 0 

Query: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAYQLSDVLVPSC 60
           MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNF+GFFHAI WKE + +        
Sbjct: 1   MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFIGFFHAIGWKEPWLMG------- 60

Query: 61  TYDLFSYLLFLLKCNGIVQVGSVRFTFYMLICTSFMYFKEK 102
              L  +   LL    + +  +    F  L+  + +YF E+
Sbjct: 61  ---LLGFHALLLIITIVTRKRTNFQMFLFLLALAGVYFAER 91

[Close]
BLAST of Clc02G08100 vs. TAIR 10
Match: AT1G34350.1 (unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY 51
          MEE+RSAME+ +D +ADL+ KLS ELR+G +PA DNF+GFFHAIDWKE +
Sbjct: 1  MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPW 50

[Close]
BLAST of Clc02G08100 vs. TAIR 10
Match: AT1G34350.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0 

Query: 1  MEELRSAMEEHMDQMADLIHKLSSELRSGLRPAVDNFVGFFHAIDWKEAY---------Q 60
          MEE+RSAME+ +D +ADL+ KLS ELR+G +PA DNF+GFFHAIDWKE +          
Sbjct: 1  MEEIRSAMEKQVDLVADLVEKLSGELRTGFQPAYDNFLGFFHAIDWKEPWIMGLMAFHAL 60

Query: 61 LSDVLVPSCTYDLFSYLLFLLKC 75
          L  V + S  +  F   LFLL C
Sbjct: 61 LLLVTLLSRRHLNFHMFLFLLAC 83

The following BLAST results are available for this feature:
BLAST of Clc02G08100 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023543279.11.8e-1660.47transmembrane protein 18 [Cucurbita pepo subsp. pepo][more]
KAG7033663.11.8e-1660.47Transmembrane protein 18, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022949841.11.8e-1660.47transmembrane protein 18 [Cucurbita moschata] >XP_022978303.1 transmembrane prot... [more]
POO00221.12.3e-1684.62Transmembrane protein [Trema orientale][more]
XP_038900756.12.3e-1690.00transmembrane protein 18 [Benincasa hispida][more]
BLAST of Clc02G08100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc02G08100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1ISM98.5e-1760.47Transmembrane protein 18 OS=Cucurbita maxima OX=3661 GN=LOC111478331 PE=3 SV=1[more]
A0A6J1GD638.5e-1760.47Transmembrane protein 18 OS=Cucurbita moschata OX=3662 GN=LOC111453119 PE=3 SV=1[more]
A0A2P5E5D71.1e-1684.62Transmembrane protein 18 OS=Parasponia andersonii OX=3476 GN=PanWU01x14_003220 P... [more]
A0A2P5FR321.1e-1684.62Transmembrane protein 18 OS=Trema orientale OX=63057 GN=TorRG33x02_039990 PE=3 S... [more]
A0A6J1DPY22.5e-1653.47Transmembrane protein 18 OS=Momordica charantia OX=3673 GN=LOC111023137 PE=3 SV=... [more]
BLAST of Clc02G08100 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G34350.11.0e-1468.00unknown protein; Has 192 Blast hits to 192 proteins in 79 species: Archae - 0; B... [more]
AT1G34350.21.3e-1451.81unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G08100.2Clc02G08100.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0052543 callose deposition in cell wall
biological_process GO:0009846 pollen germination
biological_process GO:0009860 pollen tube growth
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005640 nuclear outer membrane