Clc02G08025 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G08025
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 8986293 .. 8987317 (+)
RNA-Seq Expression	Clc02G08025
Synteny	Clc02G08025

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTTAGACAACAATGGAGGCATAAATAAGCTATTGATTCCTGCAGGTGAAGATAGAAAAGGTTGGCGCGACTTTTTATCTATTCTTATCGGCACTCCTCCTAACACACACAAACCCTTCTCCCCCTAATTAGTCTCACAAAACTCGGCTCCCCACCATAGAGAAGCTCCATCCTACAAAGAAGTTTTGGGAAGGGACATGACGACCCACCTATCAAAAAGGTTACAACCACACACGCGCAAACAAAGCTAGAAACCACTGTCATTCTCTATAGGAAATCATTCCATGATGACTGGTACAAAATTACAAGGGCTCTACAACAACACATTAGTTACTTTTGTGCTATTAATCCTTTTTTAGTTGATCAAGCTATTTTGCGCTGTGAAAATGAAGAACAGGTGGCTACCTTTGCAAGATTAAAAACTGGTACAAGGTTGGTCCCTATTTATTGAAATTCGATCAATGGAACCCTACATTTGCAATCTTACAGATGGGACGAAGACACCTTAAAGTTTATCAGAGACCATTGTGGAGGCTTCATTGAAACTGCGAGGAAGACATTATCTAGATTGGGTTTGATGTAGGCTTCTAAAAGGGTAAAGCCTATTCGCACAGGCTTCACACTAGCAGAGGTTTGGATTGCATCATCCTCTTCTTCTTCTATTTTCGTACAAATTGATCCTTTCTTTGTGGTAGAAAACCACATTGGTTTTTTGGACGGAATCCATGGAAACTTGCTGTCGATAAATGCAATCGTTGATCAACATGTGCCAGATCAGAGAGGCATCCTTGACCCTTTCCCTGGTGATGTGACCCATGGACCAAAGGACACTGATTTTGCAGGAAAGGATGACCTTCCTAAGATAGAGTTCATCTGTATCACTGCTCCCACTACTCTATTGAAGGTGACTTTACACAACCCTATCCTTTCATCCGACACACCTACACCTCATCCTCAATCCTCCACACCCCCTTTTCCCCTTCAAAAGAATCGGGCCCAACCATTCCCCGACCCAACCTAA

mRNA sequence

ATGAAGTTAGACAACAATGGAGGCATAAATAAGCTATTGATTCCTGCAGGTGAAGATAGAAAAGAAAACCACATTGGTTTTTTGGACGGAATCCATGGAAACTTGCTGTCGATAAATGCAATCGTTGATCAACATGTGCCAGATCAGAGAGGCATCCTTGACCCTTTCCCTGGTGATGTGACCCATGGACCAAAGGACACTGATTTTGCAGGAAAGGATGACCTTCCTAAGATAGAGTTCATCTGTATCACTGCTCCCACTACTCTATTGAAGGTGACTTTACACAACCCTATCCTTTCATCCGACACACCTACACCTCATCCTCAATCCTCCACACCCCCTTTTCCCCTTCAAAAGAATCGGGCCCAACCATTCCCCGACCCAACCTAA

Coding sequence (CDS)

ATGAAGTTAGACAACAATGGAGGCATAAATAAGCTATTGATTCCTGCAGGTGAAGATAGAAAAGAAAACCACATTGGTTTTTTGGACGGAATCCATGGAAACTTGCTGTCGATAAATGCAATCGTTGATCAACATGTGCCAGATCAGAGAGGCATCCTTGACCCTTTCCCTGGTGATGTGACCCATGGACCAAAGGACACTGATTTTGCAGGAAAGGATGACCTTCCTAAGATAGAGTTCATCTGTATCACTGCTCCCACTACTCTATTGAAGGTGACTTTACACAACCCTATCCTTTCATCCGACACACCTACACCTCATCCTCAATCCTCCACACCCCCTTTTCCCCTTCAAAAGAATCGGGCCCAACCATTCCCCGACCCAACCTAA

Protein sequence

MKLDNNGGINKLLIPAGEDRKENHIGFLDGIHGNLLSINAIVDQHVPDQRGILDPFPGDVTHGPKDTDFAGKDDLPKIEFICITAPTTLLKVTLHNPILSSDTPTPHPQSSTPPFPLQKNRAQPFPDPT

Homology

The following BLAST results are available for this feature:

BLAST of Clc02G08025 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G08025 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G08025 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G08025 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G08025.1	Clc02G08025.1	mRNA