Clc02G07630 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G07630
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag-pol polyprotein
Location	ClcChr02: 8040520 .. 8041634 (-)
RNA-Seq Expression	Clc02G07630
Synteny	Clc02G07630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGCAATGTGGTTTTGACCTCTCTCAAATCCTCTACTAGAGAAGATTGGTACTTTGACAGTGAAAGTTTACATCATATGATTGGTGGACGAAATTTTTTTTGTTTAATCTCACATCTGTGAGTGCAGGAAAAGTCACTTTTCGAGACTTAATTTCATCGGAAAAGGGAAGCTTAATTTCCAATGCCTACCTTCTCTAGATGATGTCATGCTGATTGAAGGACTTACTGCCAATCTTATCAGCATAAGTCAACTTTGTGACCAGGGCATGAATGTAAGTTTTACCAAAGAACAGTGTGTTGTTTCTAATGATGCTGAGGCTATTGTGATGACAGGCACTCGATCCTCGAAAAATTGTTACTTGTGGAATCCTGAAAATGGGTCTTTGGTCTGTCGTCTCTTTAGACAAGACGAAGCTAGTCTTTCGCATAAGAGGCTTGGACACATAAGTATGAAGATTATTCAAAAGGCCCTTGCAAAGAATGTTATATCTGGTCTCCCATCTCTGTCCTCTACTACAGGTATCATTTCTGGTGATTGTTAGTTAGGTAAGCAAACTCATGCTCCTCGTAAACAGGTTTCTCAACCTCGTTCAACAGGTATTTTGGAACTTCTTCACTTGAACCTTATGGTACCAATGCAGTCAAAAAGCCTGGGAGGAAAGTGTTATGTCTTAGTAAGCGCTACGACTTCTACCCAGAGCGTAACTGTAAGCCTTACTTTTATCTTTGGAAGATGGCAAGCAAAGTAGGCGGGTGGCTGAGAAAAGATGGCCAAGAGCCTTTGGCTTAAGTGGCTATGCGTTGGCTGGGTTGAGGTATGCGTCCATGAGAGTGAGCATGGGTGAGGTTGGAAAATAGGTGAAGACCTTGGGTAGCCGACCCCAAGCATGAAGGTTGATGCGTTGGCTTGTTAAGGCATGCATCCGATAGGTTGAGCACAGGTGATGGTTGCTATTATGCGTTTTGTTGAAGCCGTTGGGTAAGTGGCCATGCGTTGGTTGATGATAATAGGGGGTTGCGTTGGAGAAGCATGAGTTCAAGAGAGCCTATGGGACCGACGCATGGTGCTATGCGTTCAAGCCAGTGATCAAGGTTGCCAAGGGGAAATAA

mRNA sequence

ATGAAATGCAATGTGGTTTTGACCTCTCTCAAATCCTCTACTAGAGAAGATTGGAAAAGTCACTTTTCGAGACTTAATTTCATCGGAAAAGGGAAGCTTAATTTCCAATGCCTACCTTCTCTAGATGATGTCATGCTGATTGAAGGACTTACTGCCAATCTTATCAGCATAAGTCAACTTTGTGACCAGGGCATGAATGTAAGTTTTACCAAAGAACAGTGTGTTGTTTCTAATGATGCTGAGGCTATTGTGATGACAGGCACTCGATCCTCGAAAAATTGTTACTTGTGGAATCCTGAAAATGGGTCTTTGGTCTGTCGTCTCTTTAGACAAGACGAAGCTAGTCTTTCGCATAAGAGGCTTGGACACATAAGTATGAAGATTATTCAAAAGGCCCTTGCAAAGAATGTTATATCTGGTCTCCCATCTCTGTCCTCTACTACAGTCAAAAAGCCTGGGAGGAAAGTGTTATGTCTTAGTAAGCGCTACGACTTCTACCCAGAGCGTAACTATGGCAAGCAAAGTAGGCGGGTGGCTGAGAAAAGATGGCCAAGAGCCTTTGGCTTAAGTGGCTATGCGTTGGCTGGGTTGAGGTATGCGTCCATGAGAGTGAGCATGGGTGAGGGGGTTGCGTTGGAGAAGCATGAGTTCAAGAGAGCCTATGGGACCGACGCATGGTGCTATGCGTTCAAGCCAGTGATCAAGGTTGCCAAGGGGAAATAA

Coding sequence (CDS)

ATGAAATGCAATGTGGTTTTGACCTCTCTCAAATCCTCTACTAGAGAAGATTGGAAAAGTCACTTTTCGAGACTTAATTTCATCGGAAAAGGGAAGCTTAATTTCCAATGCCTACCTTCTCTAGATGATGTCATGCTGATTGAAGGACTTACTGCCAATCTTATCAGCATAAGTCAACTTTGTGACCAGGGCATGAATGTAAGTTTTACCAAAGAACAGTGTGTTGTTTCTAATGATGCTGAGGCTATTGTGATGACAGGCACTCGATCCTCGAAAAATTGTTACTTGTGGAATCCTGAAAATGGGTCTTTGGTCTGTCGTCTCTTTAGACAAGACGAAGCTAGTCTTTCGCATAAGAGGCTTGGACACATAAGTATGAAGATTATTCAAAAGGCCCTTGCAAAGAATGTTATATCTGGTCTCCCATCTCTGTCCTCTACTACAGTCAAAAAGCCTGGGAGGAAAGTGTTATGTCTTAGTAAGCGCTACGACTTCTACCCAGAGCGTAACTATGGCAAGCAAAGTAGGCGGGTGGCTGAGAAAAGATGGCCAAGAGCCTTTGGCTTAAGTGGCTATGCGTTGGCTGGGTTGAGGTATGCGTCCATGAGAGTGAGCATGGGTGAGGGGGTTGCGTTGGAGAAGCATGAGTTCAAGAGAGCCTATGGGACCGACGCATGGTGCTATGCGTTCAAGCCAGTGATCAAGGTTGCCAAGGGGAAATAA

Protein sequence

MKCNVVLTSLKSSTREDWKSHFSRLNFIGKGKLNFQCLPSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWNPENGSLVCRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSLSSTTVKKPGRKVLCLSKRYDFYPERNYGKQSRRVAEKRWPRAFGLSGYALAGLRYASMRVSMGEGVALEKHEFKRAYGTDAWCYAFKPVIKVAKGK

Homology

[Close]

BLAST of Clc02G07630 vs. NCBI nr
Match: MCH81412.1 (gag-pol polyprotein [Trifolium medium])

HSP 1 Score: 139.0 bits (349), Expect = 5.2e-29
Identity = 71/142 (50.00%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 8   TSLKSSTREDW--KSHFSRLNFIGKGKLNFQCLPSLDDVMLIEGLTANLISISQLCDQGM 67
           TSL++S+REDW   S  SR    G GKL    LP+LD+V+L++GLTANLISISQLCDQG+
Sbjct: 32  TSLRASSREDWYFDSGCSRHMTGGIGKLTNNGLPNLDNVLLVKGLTANLISISQLCDQGL 91

Query: 68  NVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWNP--ENGSLVCRLFRQDEASLSHKRLGH 127
            V+FTK +C+V+++   ++M G RS  NCYLW P  EN    C + ++DE  L H++LGH
Sbjct: 92  KVNFTKSECLVTSEKGELLMKGVRSKDNCYLWVPKEENHLSTCLISKEDEVKLWHQKLGH 151

Query: 128 ISMKIIQKALAKNVISGLPSLS 146
           + ++ ++KA+A+  I GLP L+
Sbjct: 152 LHLRGMKKAIAEEAIRGLPKLN 173

[Close]

BLAST of Clc02G07630 vs. NCBI nr
Match: PNY10358.1 (retrotransposon-related protein, partial [Trifolium pratense])

HSP 1 Score: 132.9 bits (333), Expect = 3.7e-27
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 8   TSLKSSTREDW--------------------KSHFSRL---------NFIGKGKLNFQCL 67
           TSLK+S+R+DW                    KS+ S              G G+L    L
Sbjct: 218 TSLKASSRDDWYFDSGCSRHMTGVEKYLVDIKSYASSFVTFGDGAKGKIQGIGRLINNGL 277

Query: 68  PSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWN 127
           P L++V+L++GLTANLISISQLCDQGM V+FTKE+C+VSND   ++M G RS  NCYLW 
Sbjct: 278 PKLENVLLVKGLTANLISISQLCDQGMKVNFTKEECIVSNDQGDVLMKGARSKDNCYLWV 337

Query: 128 P--ENGSLVCRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSL 145
           P  E     C   ++DE  + H+RLGH++++ ++KA++K  I GLP+L
Sbjct: 338 PIEETDVSTCLRIKEDEVKIWHQRLGHLNLRSMKKAMSKEAIRGLPNL 385

[Close]

BLAST of Clc02G07630 vs. NCBI nr
Match: PNX99503.1 (gag-protease polyprotein, partial [Trifolium pratense])

HSP 1 Score: 131.7 bits (330), Expect = 8.3e-27
Identity = 70/168 (41.67%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 8   TSLKSSTREDW--------------------KSHF---------SRLNFIGKGKLNFQCL 67
           TSL++S+REDW                    KS+          ++   +G G+L    L
Sbjct: 601 TSLRASSREDWYFDSGCSRHMTGVSKFLVDIKSYATSYVTFGDGAKGEIVGIGELKSNSL 660

Query: 68  PSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWN 127
           P L++V+L+ GLTANLISISQLCDQGM V+FTK +C+V+++   I+M G RS  NCYLW 
Sbjct: 661 PKLNNVLLVRGLTANLISISQLCDQGMKVNFTKSECLVTSNEGEILMKGVRSKDNCYLWV 720

Query: 128 PENGSLV--CRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSL 145
           P+ G+ V  C + ++DE  L H+RLGH++++ ++KA+++  I GLP+L
Sbjct: 721 PQEGANVSTCLITKEDEVKLWHQRLGHLNLRSMKKAISEEAIRGLPNL 768

[Close]

BLAST of Clc02G07630 vs. NCBI nr
Match: PNX93845.1 (gag-protease polyprotein, partial [Trifolium pratense])

HSP 1 Score: 129.8 bits (325), Expect = 3.2e-26
Identity = 69/168 (41.07%), Postives = 102/168 (60.71%), Query Frame = 0


Query: 8   TSLKSSTREDW--------------------KSHFSRL---------NFIGKGKLNFQCL 67
           TSL++S+REDW                    KS+ +             +G GKLN   L
Sbjct: 457 TSLRTSSREDWYFDSGCSRHMTGIGKFLVDLKSYSTSFVTFGDGAKGEIVGIGKLNSSSL 516

Query: 68  PSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWN 127
           P L++V+L++GLTANLISI+QLCDQGMNV+FTK +C+V+ND   ++M G R+  NCYLW 
Sbjct: 517 PKLNNVLLVKGLTANLISINQLCDQGMNVNFTKSECLVTNDEGELLMRGVRTKDNCYLWV 576

Query: 128 P--ENGSLVCRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSL 145
           P  E     C + ++DE    H++LGH++ + ++KA+++  I GLP+L
Sbjct: 577 PQGEEDVSTCLMTKEDEVRPWHQKLGHLNPRSMKKAISEEAIRGLPNL 624

[Close]

BLAST of Clc02G07630 vs. NCBI nr
Match: PNX66734.1 (serine/threonine protein kinase SRPK1, partial [Trifolium pratense])

HSP 1 Score: 129.0 bits (323), Expect = 5.4e-26
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 8   TSLKSSTREDWKSHF---SRLNFIGKGKLNFQCLPSLDDVMLIEGLTANLISISQLCDQG 67
           TSL++S+RE     F   ++    G GKL    LP LD+V+L+EGL ANLIS SQLCDQG
Sbjct: 30  TSLRASSRETCFVTFGDGAKSEIKGIGKLANNGLPKLDNVLLVEGLKANLISXSQLCDQG 89

Query: 68  MNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWNP--ENGSLVCRLFRQDEASLSHKRLG 127
           M V+FTK +C+V+ND   ++M G RS  NCYLW P  E+    C + ++DE  L  ++LG
Sbjct: 90  MKVNFTKSECLVTNDQGELLMKGVRSKDNCYLWIPKEEDNLSTCLISKEDEVKLWQQKLG 149

Query: 128 HISMKIIQKALAKNVISGLPSL 145
           H+ +K ++KA+AK  I GLP L
Sbjct: 150 HLHLKGMKKAIAKEEIRGLPKL 171

[Close]

BLAST of Clc02G07630 vs. ExPASy TrEMBL
Match: A0A392M256 (Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0002199 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.5e-29
Identity = 71/142 (50.00%), Postives = 101/142 (71.13%), Query Frame = 0


Query: 8   TSLKSSTREDW--KSHFSRLNFIGKGKLNFQCLPSLDDVMLIEGLTANLISISQLCDQGM 67
           TSL++S+REDW   S  SR    G GKL    LP+LD+V+L++GLTANLISISQLCDQG+
Sbjct: 32  TSLRASSREDWYFDSGCSRHMTGGIGKLTNNGLPNLDNVLLVKGLTANLISISQLCDQGL 91

Query: 68  NVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWNP--ENGSLVCRLFRQDEASLSHKRLGH 127
            V+FTK +C+V+++   ++M G RS  NCYLW P  EN    C + ++DE  L H++LGH
Sbjct: 92  KVNFTKSECLVTSEKGELLMKGVRSKDNCYLWVPKEENHLSTCLISKEDEVKLWHQKLGH 151

Query: 128 ISMKIIQKALAKNVISGLPSLS 146
           + ++ ++KA+A+  I GLP L+
Sbjct: 152 LHLRGMKKAIAEEAIRGLPKLN 173

[Close]

BLAST of Clc02G07630 vs. ExPASy TrEMBL
Match: A0A2K3P4Z0 (Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g006933 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.8e-27
Identity = 73/168 (43.45%), Postives = 101/168 (60.12%), Query Frame = 0


Query: 8   TSLKSSTREDW--------------------KSHFSRL---------NFIGKGKLNFQCL 67
           TSLK+S+R+DW                    KS+ S              G G+L    L
Sbjct: 218 TSLKASSRDDWYFDSGCSRHMTGVEKYLVDIKSYASSFVTFGDGAKGKIQGIGRLINNGL 277

Query: 68  PSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWN 127
           P L++V+L++GLTANLISISQLCDQGM V+FTKE+C+VSND   ++M G RS  NCYLW 
Sbjct: 278 PKLENVLLVKGLTANLISISQLCDQGMKVNFTKEECIVSNDQGDVLMKGARSKDNCYLWV 337

Query: 128 P--ENGSLVCRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSL 145
           P  E     C   ++DE  + H+RLGH++++ ++KA++K  I GLP+L
Sbjct: 338 PIEETDVSTCLRIKEDEVKIWHQRLGHLNLRSMKKAMSKEAIRGLPNL 385

[Close]

BLAST of Clc02G07630 vs. ExPASy TrEMBL
Match: A0A2K3N8X7 (Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g022769 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.0e-27
Identity = 70/168 (41.67%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 8   TSLKSSTREDW--------------------KSHF---------SRLNFIGKGKLNFQCL 67
           TSL++S+REDW                    KS+          ++   +G G+L    L
Sbjct: 601 TSLRASSREDWYFDSGCSRHMTGVSKFLVDIKSYATSYVTFGDGAKGEIVGIGELKSNSL 660

Query: 68  PSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWN 127
           P L++V+L+ GLTANLISISQLCDQGM V+FTK +C+V+++   I+M G RS  NCYLW 
Sbjct: 661 PKLNNVLLVRGLTANLISISQLCDQGMKVNFTKSECLVTSNEGEILMKGVRSKDNCYLWV 720

Query: 128 PENGSLV--CRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSL 145
           P+ G+ V  C + ++DE  L H+RLGH++++ ++KA+++  I GLP+L
Sbjct: 721 PQEGANVSTCLITKEDEVKLWHQRLGHLNLRSMKKAISEEAIRGLPNL 768

[Close]

BLAST of Clc02G07630 vs. ExPASy TrEMBL
Match: A0A2K3MSR1 (Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g017007 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-26
Identity = 69/168 (41.07%), Postives = 102/168 (60.71%), Query Frame = 0


Query: 8   TSLKSSTREDW--------------------KSHFSRL---------NFIGKGKLNFQCL 67
           TSL++S+REDW                    KS+ +             +G GKLN   L
Sbjct: 457 TSLRTSSREDWYFDSGCSRHMTGIGKFLVDLKSYSTSFVTFGDGAKGEIVGIGKLNSSSL 516

Query: 68  PSLDDVMLIEGLTANLISISQLCDQGMNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWN 127
           P L++V+L++GLTANLISI+QLCDQGMNV+FTK +C+V+ND   ++M G R+  NCYLW 
Sbjct: 517 PKLNNVLLVKGLTANLISINQLCDQGMNVNFTKSECLVTNDEGELLMRGVRTKDNCYLWV 576

Query: 128 P--ENGSLVCRLFRQDEASLSHKRLGHISMKIIQKALAKNVISGLPSL 145
           P  E     C + ++DE    H++LGH++ + ++KA+++  I GLP+L
Sbjct: 577 PQGEEDVSTCLMTKEDEVRPWHQKLGHLNPRSMKKAISEEAIRGLPNL 624

[Close]

BLAST of Clc02G07630 vs. ExPASy TrEMBL
Match: A0A2K3KKC5 (Serine/threonine protein kinase SRPK1 (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g055251 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 69/142 (48.59%), Postives = 94/142 (66.20%), Query Frame = 0


Query: 8   TSLKSSTREDWKSHF---SRLNFIGKGKLNFQCLPSLDDVMLIEGLTANLISISQLCDQG 67
           TSL++S+RE     F   ++    G GKL    LP LD+V+L+EGL ANLIS SQLCDQG
Sbjct: 30  TSLRASSRETCFVTFGDGAKSEIKGIGKLANNGLPKLDNVLLVEGLKANLISXSQLCDQG 89

Query: 68  MNVSFTKEQCVVSNDAEAIVMTGTRSSKNCYLWNP--ENGSLVCRLFRQDEASLSHKRLG 127
           M V+FTK +C+V+ND   ++M G RS  NCYLW P  E+    C + ++DE  L  ++LG
Sbjct: 90  MKVNFTKSECLVTNDQGELLMKGVRSKDNCYLWIPKEEDNLSTCLISKEDEVKLWQQKLG 149

Query: 128 HISMKIIQKALAKNVISGLPSL 145
           H+ +K ++KA+AK  I GLP L
Sbjct: 150 HLHLKGMKKAIAKEEIRGLPKL 171

The following BLAST results are available for this feature:

BLAST of Clc02G07630 vs. NCBI nr


Match Name	E-value	Identity	Description
MCH81412.1	5.2e-29	50.00	gag-pol polyprotein [Trifolium medium]	[more]
PNY10358.1	3.7e-27	43.45	retrotransposon-related protein, partial [Trifolium pratense]	[more]
PNX99503.1	8.3e-27	41.67	gag-protease polyprotein, partial [Trifolium pratense]	[more]
PNX93845.1	3.2e-26	41.07	gag-protease polyprotein, partial [Trifolium pratense]	[more]
PNX66734.1	5.4e-26	48.59	serine/threonine protein kinase SRPK1, partial [Trifolium pratense]	[more]

BLAST of Clc02G07630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G07630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A392M256	2.5e-29	50.00	Gag-pol polyprotein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0002199 PE=...	[more]
A0A2K3P4Z0	1.8e-27	43.45	Retrotransposon-related protein (Fragment) OS=Trifolium pratense OX=57577 GN=L19...	[more]
A0A2K3N8X7	4.0e-27	41.67	Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g0227...	[more]
A0A2K3MSR1	1.5e-26	41.07	Gag-protease polyprotein (Fragment) OS=Trifolium pratense OX=57577 GN=L195_g0170...	[more]
A0A2K3KKC5	2.6e-26	48.59	Serine/threonine protein kinase SRPK1 (Fragment) OS=Trifolium pratense OX=57577 ...	[more]

BLAST of Clc02G07630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G07630.1	Clc02G07630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0019538	protein metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0140096	catalytic activity, acting on a protein