Clc02G05430 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G05430
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein RADIALIS-like 1
LocationClcChr02: 4917614 .. 4919203 (-)
RNA-Seq ExpressionClc02G05430
SyntenyClc02G05430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGGTGAAATTCCTTTTCCCTATGGAAGCTCTACAAGATAGAGTCATTGATCGCTGAGGAAATGAGGTAATATATGTTAAATCACTACTAAACTTAGAAGTTTTTTTCTTTTTTTTTTCTTTGATTTTATACATCATTTTGAAACGATGCAAAAGTTTAAGTTGATGAATTAATGATAAATTTAATCTTCAATCTATCATTTAATACTCTTAATCACTCGTGGGATTGGAATATTAATATTAAGTATGTTGAGAATATTGAATCCAGTAAAGTTCCTTTCCCATATAAGCTCAACATGATTGAGAAGAGGTAATAATAAGCTTAATATTTAATTAAATTTAGGTGGGTTGGAATGACTTTACAAGAGCTTTAAAAGAATACATCATCTTAAAAAGTAATTTCAAGTACTACAATAATTTTGACTTTAAATGTTAGTTGACATTTTATGAATAATGACAGATGGACTCTATGATGGCAGTTATGAAAAAACACACTTTTTTTTGTTACAGAAAGTTTCAGATTTTAACGTAAATTTACTTGAGATCGCAGTTCTAACTGTCATAAAAAATATGAGTTGTGATGGTGATTTTGGACTACCATCAAAGTAAAAATCTTCCTAAATAGTCCTTATATCGTTAGAACTATTTATGAGAGTTTTAAATAAAGATAAGAATTATTTATGCATTATATCAAATTATATAAGGATGGAACACTCTAATTAACTTTCTTTCCACCAAAATTTTCATTTGATTGAGAGATTATTCCTGGATTCTTTTGTAAATTAATCGTTTACATGTTTTGAGGAGAAACAATAACTCATCAAATTGTAAGCTGTTTAAAATAAAGGATACTTTTTTTTTTTCTTCTTGTTCTTTTGAAATTAAAGCATGCAGCAATAAGAAGCCTCAGAATTCGGCTCTTCAAAACCAACAAAACTACGTTTTTACACAGAGGAATATCATATAAGATCAATTATAATTACCTTATTTTTCATAGATATGTCCTTAAAAATTTCTTAAGTTTGATTTTAATTAACACAATATTTCTCTTTCCTCCTTTGTTTTGTCAGGATGGAGAAACATGAAGTTGGATTGAGCCAATTCTTGCAGTGCTTGAATAATAAAAGAAAGAAAGAACCATTTTGTTTTCTTTTTTGTGCCCATTTTAAATGTAATTGTAATTTTCATTGGAGAAAAATGCTTGAAACGCATGGTGCGCCGCGGCGCTGAAGCAGAAACGCATCAGCATGGACGCAGAGCAGCAACGCGGCGCTGGGAAGGCGCTGCTTCGACGCGTACTTGGTGAACGCAAGACAGCGTCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGTCGCAACGCTAGCGCCGCGGCGCCAGCGTTAATTTAA

mRNA sequence

ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGAGTCATTGATCGCTGAGGAAATGAGGATGGAGAAACATGAAGTTGGATTGAGCCAATTCTTGCAGTGCTTGAATAATAAAAGAAAGAAAGAACCATTTTGTTTTCTTTTTTGTGCCCATTTTAAATCATGGACGCAGAGCAGCAACGCGGCGCTGGGAAGGCGCTGCTTCGACGCGTACTTGGTGAACGCAAGACAGCGTCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGTCGCAACGCTAGCGCCGCGGCGCCAGCGTTAATTTAA

Coding sequence (CDS)

ATGGCTTCCATTTCTGCTTTTGGACCAAGCACTCCATGGACTACAAAGCAAAACAAAGCCTTTGAGAAAGCTTTGGCAGTTTATGATCAAGATACACCTGAAAGATGGCTCAATGTTGCAAAGGCCATTGGCGGCAAAACTGAAGAAGAAGTGAAGAGGCATTATCAACTTCTTGTGGAAGATGTTAAGCATATTGAGTCGGAGTCATTGATCGCTGAGGAAATGAGGATGGAGAAACATGAAGTTGGATTGAGCCAATTCTTGCAGTGCTTGAATAATAAAAGAAAGAAAGAACCATTTTGTTTTCTTTTTTGTGCCCATTTTAAATCATGGACGCAGAGCAGCAACGCGGCGCTGGGAAGGCGCTGCTTCGACGCGTACTTGGTGAACGCAAGACAGCGTCGCGGCGCTAAAACCCGAGAGCAACTTAATTTTGGTCGCAACGCTAGCGCCGCGGCGCCAGCGTTAATTTAA

Protein sequence

MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIESESLIAEEMRMEKHEVGLSQFLQCLNNKRKKEPFCFLFCAHFKSWTQSSNAALGRRCFDAYLVNARQRRGAKTREQLNFGRNASAAAPALI
Homology
[Close]
BLAST of Clc02G05430 vs. NCBI nr
Match: KAA0036165.1 (protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS++A GPSTPWT KQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLLVE
Sbjct: 1  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKHIES 68
          DVKHIES
Sbjct: 61 DVKHIES 67

[Close]
BLAST of Clc02G05430 vs. NCBI nr
Match: KAE8645640.1 (hypothetical protein Csa_020521 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 5.6e-24
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS++A GPST WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIES 68
          DVKHIES
Sbjct: 61 DVKHIES 67

[Close]
BLAST of Clc02G05430 vs. NCBI nr
Match: KAG7011710.1 (Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-22
Identity = 57/76 (75.00%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S+ WT ++NKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+
Sbjct: 1  MASMSAHG-SSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVK 60

Query: 61 DVKHIESESLIAEEMR 77
          DVKHIESE+++   M+
Sbjct: 61 DVKHIESENIMMRNMK 75

[Close]
BLAST of Clc02G05430 vs. NCBI nr
Match: XP_022952074.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG6572044.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011711.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 2.4e-22
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G +  WT KQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLL++
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKHIES 68
          DVK IES
Sbjct: 61 DVKQIES 67

[Close]
BLAST of Clc02G05430 vs. NCBI nr
Match: XP_008447025.1 (PREDICTED: protein RADIALIS-like 1 [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S  WT KQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIES 68
          DVKHIES
Sbjct: 61 DVKHIES 66

[Close]
BLAST of Clc02G05430 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.4e-19
Identity = 41/63 (65.08%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 5  SAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKH 64
          S  G   PW+ K+NKAFE+ALAVYD+DTP+RW NVA+A+ G+T EEVK+HY++LVED+K+
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

Query: 65 IES 68
          IES
Sbjct: 63 IES 65

[Close]
BLAST of Clc02G05430 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 1  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLV 60
          MAS S    S+  WT KQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIES 68
          +D+  IE+
Sbjct: 61 QDINSIEN 68

[Close]
BLAST of Clc02G05430 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-18
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 3  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV 62
          S+S++G S  WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIES 68
          + IE+
Sbjct: 65 ESIEN 68

[Close]
BLAST of Clc02G05430 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.2e-18
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS S+   S+ WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESE 69
          D+ +IE +
Sbjct: 61 DLMNIEQD 67

[Close]
BLAST of Clc02G05430 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 11 TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES 68
          +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

[Close]
BLAST of Clc02G05430 vs. ExPASy TrEMBL
Match: A0A5A7T3V4 (Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold214G00070 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS++A GPSTPWT KQNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVKRHYQLLVE
Sbjct: 1  MASMTAHGPSTPWTAKQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60

Query: 61 DVKHIES 68
          DVKHIES
Sbjct: 61 DVKHIES 67

[Close]
BLAST of Clc02G05430 vs. ExPASy TrEMBL
Match: A0A0A0K3K5 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 9.3e-25
Identity = 61/71 (85.92%), Postives = 64/71 (90.14%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS++A GPST WT  QNKAFEKALAVYD+DTPERWLNVAKAIGGKTEEEVK HYQLLVE
Sbjct: 1  MASMTAHGPSTTWTINQNKAFEKALAVYDKDTPERWLNVAKAIGGKTEEEVKSHYQLLVE 60

Query: 61 DVKHIESESLI 72
          DVKHIES  LI
Sbjct: 61 DVKHIESGRLI 71

[Close]
BLAST of Clc02G05430 vs. ExPASy TrEMBL
Match: A0A6J1GKK4 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454836 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-22
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G +  WT KQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLL++
Sbjct: 1  MASMSAHGSAGSWTAKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLLK 60

Query: 61 DVKHIES 68
          DVK IES
Sbjct: 61 DVKQIES 67

[Close]
BLAST of Clc02G05430 vs. ExPASy TrEMBL
Match: A0A1S3BGF6 (protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 7.4e-22
Identity = 57/67 (85.07%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S  WT KQNKAFEKALA+YD+DTP+RWLNVAKAIGGKTEEEVKRHYQLL+E
Sbjct: 1  MASMSAHG-SGVWTAKQNKAFEKALAMYDKDTPDRWLNVAKAIGGKTEEEVKRHYQLLLE 60

Query: 61 DVKHIES 68
          DVKHIES
Sbjct: 61 DVKHIES 66

[Close]
BLAST of Clc02G05430 vs. ExPASy TrEMBL
Match: A0A6J1GKV1 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.6e-21
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS+SA G S+ WT ++NKAFEKALAV+DQDTPERW+NVAKAIGGKTE+EVKRHYQLLV+
Sbjct: 1  MASMSAHG-SSAWTARENKAFEKALAVFDQDTPERWVNVAKAIGGKTEDEVKRHYQLLVK 60

Query: 61 DVKHIES 68
          DVKHIES
Sbjct: 61 DVKHIES 66

[Close]
BLAST of Clc02G05430 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 93.2 bits (230), Expect = 2.0e-19
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 0 

Query: 1  MASISAFGPST-PWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLV 60
          MAS S    S+  WT KQNKAFE+ALA YDQDTP RW NVAK +GGKT EEVKRHY+LLV
Sbjct: 1  MASSSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLV 60

Query: 61 EDVKHIES 68
          +D+  IE+
Sbjct: 61 QDINSIEN 68

[Close]
BLAST of Clc02G05430 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-19
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0 

Query: 3  SISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDV 62
          S+S++G S  WT KQNKAFE+ALAVYDQDTP+RW NVA+A+GGKT EE KR Y LLV D+
Sbjct: 5  SMSSYG-SGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDI 64

Query: 63 KHIES 68
          + IE+
Sbjct: 65 ESIEN 68

[Close]
BLAST of Clc02G05430 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-19
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 0 

Query: 1  MASISAFGPSTPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVE 60
          MAS S+   S+ WT+KQNK FE+ALAVYD+DTP+RW NVAKA+G K+ EEVKRHY +LVE
Sbjct: 1  MAS-SSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVE 60

Query: 61 DVKHIESE 69
          D+ +IE +
Sbjct: 61 DLMNIEQD 67

[Close]
BLAST of Clc02G05430 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-19
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 11 TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES 68
          +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

[Close]
BLAST of Clc02G05430 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 90.9 bits (224), Expect = 9.9e-19
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 11 TPWTTKQNKAFEKALAVYDQDTPERWLNVAKAIGGKTEEEVKRHYQLLVEDVKHIES 68
          +PWT  QNK FE+ALAVYD+DTP+RW NVAKA+GGKT EEVKRHY +LVED+ +IE+
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIET 66

The following BLAST results are available for this feature:
BLAST of Clc02G05430 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036165.12.7e-2692.54protein RADIALIS-like 1 [Cucumis melo var. makuwa] >TYK19711.1 protein RADIALIS-... [more]
KAE8645640.15.6e-2488.06hypothetical protein Csa_020521 [Cucumis sativus][more]
KAG7011710.11.1e-2275.00Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosper... [more]
XP_022952074.12.4e-2285.07protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511408.1 protein RADIALIS-li... [more]
XP_008447025.11.5e-2185.07PREDICTED: protein RADIALIS-like 1 [Cucumis melo][more]
BLAST of Clc02G05430 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q58FS37.4e-1965.08Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
F4JVB82.8e-1867.65Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q9SIJ56.2e-1867.69Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
Q8GW758.2e-1864.71Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1[more]
Q1A1731.4e-1771.93Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
BLAST of Clc02G05430 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T3V41.3e-2692.54Protein RADIALIS-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3K59.3e-2585.92SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G169590 PE=4 S... [more]
A0A6J1GKK41.1e-2285.07protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111454836 PE=4 SV=1[more]
A0A1S3BGF67.4e-2285.07protein RADIALIS-like 1 OS=Cucumis melo OX=3656 GN=LOC103489576 PE=4 SV=1[more]
A0A6J1GKV11.6e-2182.09protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455288 PE=4 SV=1[more]
BLAST of Clc02G05430 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39250.12.0e-1967.65RAD-like 1 [more]
AT2G21650.14.4e-1967.69Homeodomain-like superfamily protein [more]
AT1G19510.15.8e-1964.71RAD-like 5 [more]
AT1G75250.19.9e-1971.93RAD-like 6 [more]
AT1G75250.29.9e-1971.93RAD-like 6 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 9..61
e-value: 6.4E-7
score: 39.0
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 12..59
score: 6.132755
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 12..59
e-value: 1.47926E-5
score: 38.3254
NoneNo IPR availableGENE3D1.10.10.60coord: 6..70
e-value: 2.2E-20
score: 74.2
NoneNo IPR availablePANTHERPTHR43952:SF68MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..80
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..80
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 11..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G05430.1Clc02G05430.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 DNA-binding transcription factor activity