Clc02G05395 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G05395
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr02: 4845235 .. 4847104 (+)
RNA-Seq ExpressionClc02G05395
SyntenyClc02G05395
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAAGAAAAAAAAAAAGAGGGGTAATTGAAATATACATTTGGTTAAGTAGTTAGGGTTTAAGTTATATATATAGAGAGAGAGAGGTATTCTTGTGTTGTGTGAAAAAAAAGAGAAGAAGAAATCTCTTCCTTCTTCATCTCCTTCGTTCGGTAGCAGGCTCACCCATCTCATCTTCTTCATCTTCTTCATCTCACAATCATCCTCTTGCCGTTCGTCTCCACCGGTTGCTGCACAACCCGTCTTCACCGCTATCCATGCAAACCATCGTCTAGACTGGTCACCGACGCCCCGTTGTATGCACGAAGCATTACATCAATAGGTTTTGCCGTTGTTTTTTCAGCTGCCGACTGCCACATCGTTGCTCGCTGCCATTGTCTCGAGTCATCTGTTGCGTGCCATCACCGGATCTTGCCGTAAGTCACCGGAATCTTGGATTTTGGGTGAGTTTGGGTGTTTTGTGGGTTTCTTGGAGGTTGTTGATTACGCAATAGTTGTTTGGTCTAAAATCAATTTACCCATCACATCTTAATGCTAGATTGAAGTTTTGGGAAGTTTAAAGTTGCTCACCAGGTTTGCCTTTTAAGTATATGTTTCTAGTAATATATGCATGAAATCTTGCTGGATTTACTACTTAGCTATTATGAGGAATTTAATACCAATTATTTGTATATGGATATTAGAAAATGACTCGAGGAGGTAGAGGAGGCAGAAGAGGTAGAGGGGGCAGGGAAGAGAAAAAAGGAAAGGAGTGTTACAAAGCCCTCAACTTCGAGACCCTGTAGTCAAGGACCCTCAGGCCCAAGGCCCTTCTTCACCACAAGTTCCCCCCCAGTCGCAAGACCCTTCCAATTCGGGAGAACCAGTGACTAGGACGAGAAGACAAAACCGCAATGCACCAGTTCCTCCTCTGGCGCCCGTTCCACTAGTCGTTCTGCCCGAGTATACTACGATGACAGCAACAATAGGAAAGGCTATTACAACGGTTATAATGGGATGAAGGACATGATGGCGGAGCAGATAGCCCAACATATTCAATCTTAGCAAGTACCACCTCAGCTGAATTAAGTGCCTCAGGTTCAAGTCCAGAGTCAGAACTTGCAAGACCTATCTCCAGAAGTGAAACATTTATAGGACTTCAGGAAGTACAACCTTCACACTTTCGATGGGTCACTGAAGGACCCTACTAAAGCAGAACTATGGTTGTCCTTCATAAAGATGATTTTCAAATATATGAAGTGCCTAGAAGATCAGAAGGTGCAGTGTGTCGTCTTTGTGTTGACAGACGAAGCTCATATTTGGCGGCAGACAGCAGAAAGGATGATTGGTGTCGGTGTTGAACCAATGATGTGGGAATAGTTGAAGGAGCACTTCTACGAGAAATACTTCTTTGCAAACTTAAGACATCTCAAGGAGAAGAAATTTCTAGGCTTAGAGCGGGGCAACATGTTTGTAGAGGAGAACGATCAAGAGTTTGAATAGATTTCTCATTTTGCTCCTACCATGATTGCCACGGAGGTAGAGAGAACAAAAAGATTTGTCCAGGGGCTGAGGGATGGGTTGCAAGGTTTGTTGCAAGCTTTTAAACCAACCACCTGAGTTGAAGCCCTCTGCTTAGCAAGTTAAATAGATTCTCAGTCAGGGGTCGAGCAGTTAAAGTCTTTAGGAATGGGATCCTCTTCAGACTTGAAAAGGAAGGCAAATCAGAGATAGACCTCAGTGTCATTGGAGGCAACAAGGCTCTCAGTCCTTAACTATTAGGGAAGACAAGCCAATTTGTAAGTCATGTGGGAGACATCAGTGAGGGCGCTGCTTGGTTGGTAGTAGGGTATGTTATCATTGCAGATAGAAAGGGCATACGACTGA

mRNA sequence

ATGAAAGAAAGAAAAAAAAAAAGAGGGGCTCACCCATCTCATCTTCTTCATCTTCTTCATCTCACAATCATCCTCTTGCCGTTCGTCTCCACCGGTTGCTGCACAACCCGTCTTCACCGCTATCCATGCAAACCATCGTCTAGACTGGTCACCGACGCCCCGTTGTATGCACGAAGCATTACATCAATAGGTTTTGCCGTTCTGCCGACTGCCACATCGTTGCTCGCTGCCATTGTCTCGAGTCATCTGTTGCGTGCCATCACCGGATCTTGCCGTAAGTCACCGGAATCTTGGATTTTGGGTGAGTTTGGGTGTTTTGTGGGTTTCTTGGAGGGAAGAGAAAAAAGGAAAGGAGTGTTACAAAGCCCTCAACTTCGAGACCCTGTAGTCAAGGACCCTCAGGCCCAAGGCCCTTCTTCACCACAAGTTCCCCCCCAGTCGCAAGACCCTTCCAATTCGGGAGAACCAGTGACTAGGACGAGAAGACAAAACCGCAATGCACCAGTTCCTCCTCTGGCGCCCGTTCCACTAGTCGTTCTGCCCGAGTATACTACGATGACAGCAACAATAGGAAAGGCTATTACAACGATAGAAAGGGCATACGACTGA

Coding sequence (CDS)

ATGAAAGAAAGAAAAAAAAAAAGAGGGGCTCACCCATCTCATCTTCTTCATCTTCTTCATCTCACAATCATCCTCTTGCCGTTCGTCTCCACCGGTTGCTGCACAACCCGTCTTCACCGCTATCCATGCAAACCATCGTCTAGACTGGTCACCGACGCCCCGTTGTATGCACGAAGCATTACATCAATAGGTTTTGCCGTTCTGCCGACTGCCACATCGTTGCTCGCTGCCATTGTCTCGAGTCATCTGTTGCGTGCCATCACCGGATCTTGCCGTAAGTCACCGGAATCTTGGATTTTGGGTGAGTTTGGGTGTTTTGTGGGTTTCTTGGAGGGAAGAGAAAAAAGGAAAGGAGTGTTACAAAGCCCTCAACTTCGAGACCCTGTAGTCAAGGACCCTCAGGCCCAAGGCCCTTCTTCACCACAAGTTCCCCCCCAGTCGCAAGACCCTTCCAATTCGGGAGAACCAGTGACTAGGACGAGAAGACAAAACCGCAATGCACCAGTTCCTCCTCTGGCGCCCGTTCCACTAGTCGTTCTGCCCGAGTATACTACGATGACAGCAACAATAGGAAAGGCTATTACAACGATAGAAAGGGCATACGACTGA

Protein sequence

MKERKKKRGAHPSHLLHLLHLTIILLPFVSTGCCTTRLHRYPCKPSSRLVTDAPLYARSITSIGFAVLPTATSLLAAIVSSHLLRAITGSCRKSPESWILGEFGCFVGFLEGREKRKGVLQSPQLRDPVVKDPQAQGPSSPQVPPQSQDPSNSGEPVTRTRRQNRNAPVPPLAPVPLVVLPEYTTMTATIGKAITTIERAYD
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..165
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..174
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..33
score: 9.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G05395.1Clc02G05395.1mRNA