Clc02G04700 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATGCATTGAACTGAACTTCCCATTTCTCTTCATCTTCTCAATTTGAAAAAAGAAAAATCCCCAAAAATCAAAATCAATGAGCCATTACAGAAGAACCACCACAGATTCAATTCTCGATTCTCTTTCCCTCAATCCTCCGCCGTATCCCGTCCTCCTCCTCCTCGCCGTCGTCTCCATCTTCCTCGGCGCTTCCTGGTGGCTCTCCTACGAGTCCGCCGTTGAGGCTGCCGAGGATCACATCAACTGGATTCTCTTCGCCACACCGGTTCTCCTCATCGTTCTCGTCCGACTCCTCTCCTCTGTCGATCCGAGCTTCTTTTCTTCCTCGCCTTGGGACCGTCGCCGCCGCACGCATCATCTCCCGGCCGAAGGAAGCTCGCCGTGGGGCGTGGCTGCGTTGATCGTGCTCTTGCTCGTTCTTGTGCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATTTGATGAAGGTTTCGAAGGTGTATAGATTTGACGAACGCGATCGCTTCTCTGTAGTTGGAGAGCGATAGAGGTATAATAATTTCTGTTGATTTTTTGTTTTTGGAAAGGAAATTAGTGTTGTTTGTATATAGTGAATGTCTCTCTGATGTATCATTTGAAGCAAATCTTATTAGTTTGTTTTGTTTCTAGGGCTTCAATCATGAACAATGAAGATGAACTCGTTTTTGTTTATCAAATAAATATAAATACTCTGTCTAA AATGCATTGAACTGAACTTCCCATTTCTCTTCATCTTCTCAATTTGAAAAAAGAAAAATCCCCAAAAATCAAAATCAATGAGCCATTACAGAAGAACCACCACAGATTCAATTCTCGATTCTCTTTCCCTCAATCCTCCGCCGTATCCCGTCCTCCTCCTCCTCGCCGTCGTCTCCATCTTCCTCGGCGCTTCCTGGTGGCTCTCCTACGAGTCCGCCGTTGAGGCTGCCGAGGATCACATCAACTGGATTCTCTTCGCCACACCGGTTCTCCTCATCGTTCTCGTCCGACTCCTCTCCTCTGTCGATCCGAGCTTCTTTTCTTCCTCGCCTTGGGACCGTCGCCGCCGCACGCATCATCTCCCGGCCGAAGGAAGCTCGCCGTGGGGCGTGGCTGCGTTGATCGTGCTCTTGCTCGTTCTTGTGCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATTTGATGAAGGTTTCGAAGGTGTATAGATTTGACGAACGCGATCGCTTCTCTGTAGTTGGAGAGCGATAGAGGTATAATAATTTCTGTTGATTTTTTGTTTTTGGAAAGGAAATTAGTGTTGTTTGTATATAGTGAATGTCTCTCTGATGTATCATTTGAAGCAAATCTTATTAGTTTGTTTTGTTTCTAGGGCTTCAATCATGAACAATGAAGATGAACTCGTTTTTGTTTATCAAATAAATATAAATACTCTGTCTAA ATGAGCCATTACAGAAGAACCACCACAGATTCAATTCTCGATTCTCTTTCCCTCAATCCTCCGCCGTATCCCGTCCTCCTCCTCCTCGCCGTCGTCTCCATCTTCCTCGGCGCTTCCTGGTGGCTCTCCTACGAGTCCGCCGTTGAGGCTGCCGAGGATCACATCAACTGGATTCTCTTCGCCACACCGGTTCTCCTCATCGTTCTCGTCCGACTCCTCTCCTCTGTCGATCCGAGCTTCTTTTCTTCCTCGCCTTGGGACCGTCGCCGCCGCACGCATCATCTCCCGGCCGAAGGAAGCTCGCCGTGGGGCGTGGCTGCGTTGATCGTGCTCTTGCTCGTTCTTGTGCAGTTCCAGTCCTCGTTCCGTGAGAGCTGGTCCATTTGA MSHYRRTTTDSILDSLSLNPPPYPVLLLLAVVSIFLGASWWLSYESAVEAAEDHINWILFATPVLLIVLVRLLSSVDPSFFSSSPWDRRRRTHHLPAEGSSPWGVAALIVLLLVLVQFQSSFRESWSI Homology
BLAST of Clc02G04700 vs. NCBI nr
Match: XP_038888316.1 (uncharacterized protein LOC120078163 [Benincasa hispida]) HSP 1 Score: 241.9 bits (616), Expect = 3.0e-60 Identity = 123/129 (95.35%), Postives = 125/129 (96.90%), Query Frame = 0
BLAST of Clc02G04700 vs. NCBI nr
Match: KAA0049726.1 (hypothetical protein E6C27_scaffold76G00740 [Cucumis melo var. makuwa] >TYK12149.1 hypothetical protein E5676_scaffold106G00860 [Cucumis melo var. makuwa]) HSP 1 Score: 238.0 bits (606), Expect = 4.4e-59 Identity = 118/129 (91.47%), Postives = 124/129 (96.12%), Query Frame = 0
BLAST of Clc02G04700 vs. NCBI nr
Match: XP_022989070.1 (uncharacterized protein LOC111486253 [Cucurbita maxima]) HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58 Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 0
BLAST of Clc02G04700 vs. NCBI nr
Match: KGN43227.1 (hypothetical protein Csa_020160 [Cucumis sativus]) HSP 1 Score: 235.7 bits (600), Expect = 2.2e-58 Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = 0
BLAST of Clc02G04700 vs. NCBI nr
Match: KAG6588994.1 (hypothetical protein SDJN03_17559, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 232.3 bits (591), Expect = 2.4e-57 Identity = 118/129 (91.47%), Postives = 122/129 (94.57%), Query Frame = 0
BLAST of Clc02G04700 vs. ExPASy TrEMBL
Match: A0A5A7U6E4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00860 PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59 Identity = 118/129 (91.47%), Postives = 124/129 (96.12%), Query Frame = 0
BLAST of Clc02G04700 vs. ExPASy TrEMBL
Match: A0A6J1JLC4 (uncharacterized protein LOC111486253 OS=Cucurbita maxima OX=3661 GN=LOC111486253 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58 Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 0
BLAST of Clc02G04700 vs. ExPASy TrEMBL
Match: A0A0A0K4L6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G009710 PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.1e-58 Identity = 116/129 (89.92%), Postives = 124/129 (96.12%), Query Frame = 0
BLAST of Clc02G04700 vs. ExPASy TrEMBL
Match: A0A6J1C2N0 (uncharacterized protein LOC111007895 OS=Momordica charantia OX=3673 GN=LOC111007895 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 7.1e-55 Identity = 110/128 (85.94%), Postives = 117/128 (91.41%), Query Frame = 0
BLAST of Clc02G04700 vs. ExPASy TrEMBL
Match: A0A5N5I8U5 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_026703 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 2.8e-43 Identity = 87/129 (67.44%), Postives = 108/129 (83.72%), Query Frame = 0
BLAST of Clc02G04700 vs. TAIR 10
Match: AT2G21180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 124 Blast hits to 124 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 124.8 bits (312), Expect = 5.0e-29 Identity = 74/126 (58.73%), Postives = 88/126 (69.84%), Query Frame = 0
BLAST of Clc02G04700 vs. TAIR 10
Match: AT5G19875.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 80.5 bits (197), Expect = 1.1e-15 Identity = 49/117 (41.88%), Postives = 68/117 (58.12%), Query Frame = 0
BLAST of Clc02G04700 vs. TAIR 10
Match: AT5G42146.1 (unknown protein; Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.9 bits (159), Expect = 2.8e-11 Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 0
BLAST of Clc02G04700 vs. TAIR 10
Match: AT2G31940.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10 Identity = 32/107 (29.91%), Postives = 52/107 (48.60%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|