Clc02G04103 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G04103
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionO-methyltransferase
LocationClcChr02: 3486689 .. 3486885 (-)
RNA-Seq ExpressionClc02G04103
SyntenyClc02G04103
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGAACGACGAAAAATGTATTAAAATTTTGAAGAAGTGCAAGGAAGCCATTAAAAAAAGGGAAGGGAAAGTGATAATTATAGAAGCAATAATTGAAGAAGAAGGTGAAAAAAACAAGCTGTCAGATGTGGGATTGATGTTTGACCTAGTGATGATGGCTCATACCAATAAAGGCAAAGAAAGAACACTTTAA

mRNA sequence

ATGATTGGAACGACGAAAAATAAGTGCAAGGAAGCCATTAAAAAAAGGGAAGGGAAAGTGATAATTATAGAAGCAATAATTGAAGAAGAAGGTGAAAAAAACAAGCTGTCAGATGTGGGATTGATGTTTGACCTAGTGATGATGGCTCATACCAATAAAGGCAAAGAAAGAACACTTTAA

Coding sequence (CDS)

ATGATTGGAACGACGAAAAATAAGTGCAAGGAAGCCATTAAAAAAAGGGAAGGGAAAGTGATAATTATAGAAGCAATAATTGAAGAAGAAGGTGAAAAAAACAAGCTGTCAGATGTGGGATTGATGTTTGACCTAGTGATGATGGCTCATACCAATAAAGGCAAAGAAAGAACACTTTAA

Protein sequence

MIGTTKNKCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL
Homology
[Close]
BLAST of Clc02G04103 vs. NCBI nr
Match: XP_038888809.1 (acetylserotonin O-methyltransferase-like [Benincasa hispida])

HSP 1 Score: 85.9 bits (211), Expect = 1.3e-13
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           KCKE I K  GKVII+EAI+EE+GEKNK SDVGLMFD+ MMAHTNKGKERT+
Sbjct: 272 KCKEVIPKSGGKVIIVEAIVEEKGEKNKKSDVGLMFDVAMMAHTNKGKERTI 323

[Close]
BLAST of Clc02G04103 vs. NCBI nr
Match: XP_038887354.1 (acetylserotonin O-methyltransferase-like isoform X1 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 4.9e-13
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           +CKEAI K  GKVII+EAIIEE+ E  K+SDVGLMFDLVMMAHTNKGKERT+
Sbjct: 272 RCKEAIPKSGGKVIIVEAIIEEKSENKKVSDVGLMFDLVMMAHTNKGKERTI 323

[Close]
BLAST of Clc02G04103 vs. NCBI nr
Match: XP_038887539.1 (acetylserotonin O-methyltransferase-like isoform X2 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 4.9e-13
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           +CKEAI K  GKVII+EAIIEE+ E  K+SDVGLMFDLVMMAHTNKGKERT+
Sbjct: 256 RCKEAIPKSGGKVIIVEAIIEEKSENKKVSDVGLMFDLVMMAHTNKGKERTI 307

[Close]
BLAST of Clc02G04103 vs. NCBI nr
Match: XP_038887355.1 (acetylserotonin O-methyltransferase-like isoform X2 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 4.9e-13
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           +CKEAI K  GKVII+EAIIEE+ E  K+SDVGLMFDLVMMAHTNKGKERT+
Sbjct: 256 RCKEAIPKSGGKVIIVEAIIEEKSENKKVSDVGLMFDLVMMAHTNKGKERTI 307

[Close]
BLAST of Clc02G04103 vs. NCBI nr
Match: XP_038887538.1 (acetylserotonin O-methyltransferase-like isoform X1 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 4.9e-13
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           +CKEAI K  GKVII+EAIIEE+ E  K+SDVGLMFDLVMMAHTNKGKERT+
Sbjct: 272 RCKEAIPKSGGKVIIVEAIIEEKSENKKVSDVGLMFDLVMMAHTNKGKERTI 323

[Close]
BLAST of Clc02G04103 vs. ExPASy Swiss-Prot
Match: Q9T003 (Acetylserotonin O-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=ASMT PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-07
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 9   CKEAIKKREGKVIIIEAIIEE-------EGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           CKEA+    GKV+I+E++I E       +    KL  V LM D+VMMAHT+ GKERTL
Sbjct: 293 CKEAVPPNIGKVLIVESVIGENKKTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTL 350

[Close]
BLAST of Clc02G04103 vs. ExPASy Swiss-Prot
Match: Q6WUC2 ((R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum OX=3469 GN=7OMT PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-05
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0 

Query: 6   KNKCKEAIKKREGKVIIIEAIIEEEGEKNKLSD-VGLMFDLVMMAHTNKGKERT 59
           KN  +   KK+ GKVII++ ++  +G  N L D +GL+FD++MMAHT  GKERT
Sbjct: 271 KNCYRAIRKKKNGKVIIVDCVLRPDG--NDLFDKMGLIFDVLMMAHTTAGKERT 322

[Close]
BLAST of Clc02G04103 vs. ExPASy Swiss-Prot
Match: Q7XB11 (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase 1 OS=Papaver somniferum OX=3469 GN=4'OMT1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.9e-04
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERT 59
           KCKEAI K  GKVII++  +EEE E ++L+   L+ D+ M+ +T  G+ERT
Sbjct: 274 KCKEAIPKETGKVIIVDVALEEESE-HELTKARLILDIDMLVNTG-GRERT 322

[Close]
BLAST of Clc02G04103 vs. ExPASy Swiss-Prot
Match: Q7XB10 (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase 2 OS=Papaver somniferum OX=3469 GN=4'OMT2 PE=1 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 9.6e-04
Identity = 24/51 (47.06%), Postives = 35/51 (68.63%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERT 59
           KCKEAI K  GKVII++  +EEE   ++L+   L+ D+ M+ +T  G+ERT
Sbjct: 277 KCKEAIPKETGKVIIVDVALEEE-SNHELTKTRLILDIDMLVNTG-GRERT 325

[Close]
BLAST of Clc02G04103 vs. ExPASy TrEMBL
Match: A0A371HNY6 ((RS)-norcoclaurine 6-O-methyltransferase (Fragment) OS=Mucuna pruriens OX=157652 GN=6OMT PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.0e-13
Identity = 39/53 (73.58%), Postives = 45/53 (84.91%), Query Frame = 0 

Query: 7   NKCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           NKC+EAI K  G+VII+EA+IEEEG+ N L DVGLM D+VMMAHTN GKERTL
Sbjct: 273 NKCREAIPKENGRVIIVEAVIEEEGKHNGLKDVGLMLDMVMMAHTNLGKERTL 325

[Close]
BLAST of Clc02G04103 vs. ExPASy TrEMBL
Match: A0A0A0K629 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018730 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIE-EEGEK--NKLSDVGLMFDLVMMAHTNKGKERT 59
           KCKE+I K  GKVIIIEAIIE E+GEK   KLSDVGLMFDLVMMAHTN+GKERT
Sbjct: 272 KCKESIPKSGGKVIIIEAIIEAEKGEKKNKKLSDVGLMFDLVMMAHTNRGKERT 325

[Close]
BLAST of Clc02G04103 vs. ExPASy TrEMBL
Match: A0A5A7TGF8 ((RS)-norcoclaurine 6-O-methyltransferase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G004180 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAII--EEEGE--KNKLSDVGLMFDLVMMAHTNKGKERT 59
           KCKEAI K  GKVIIIEAII   E+GE  K KLSDVGLMFDLVMMAHTNKG+ERT
Sbjct: 272 KCKEAIPKSGGKVIIIEAIIIEAEKGEKMKKKLSDVGLMFDLVMMAHTNKGRERT 326

[Close]
BLAST of Clc02G04103 vs. ExPASy TrEMBL
Match: A0A1S3BJE6 ((RS)-norcoclaurine 6-O-methyltransferase-like OS=Cucumis melo OX=3656 GN=LOC103490250 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.8e-11
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAII--EEEGE--KNKLSDVGLMFDLVMMAHTNKGKERT 59
           KCKEAI K  GKVIIIEAII   E+GE  K KLSDVGLMFDLVMMAHTNKG+ERT
Sbjct: 272 KCKEAIPKSGGKVIIIEAIIIEAEKGEKMKKKLSDVGLMFDLVMMAHTNKGRERT 326

[Close]
BLAST of Clc02G04103 vs. ExPASy TrEMBL
Match: A0A4P1QS34 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_04812 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 8.4e-11
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 8   KCKEAIKKREGKVIIIEAIIEEEGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           KC+E+I K  G+VII+E +IEEEG  +KL D+ LMFD+VMMAHTN GKERTL
Sbjct: 255 KCRESIPKENGRVIIVELVIEEEGNHDKLKDIRLMFDMVMMAHTNFGKERTL 306

[Close]
BLAST of Clc02G04103 vs. TAIR 10
Match: AT4G35160.1 (O-methyltransferase family protein )

HSP 1 Score: 53.5 bits (127), Expect = 6.6e-08
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 9   CKEAIKKREGKVIIIEAIIEE-------EGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           CKEA+    GKV+I+E++I E       +    KL  V LM D+VMMAHT+ GKERTL
Sbjct: 293 CKEAVPPNIGKVLIVESVIGENKKTMIVDERDEKLEHVRLMLDMVMMAHTSTGKERTL 350

[Close]
BLAST of Clc02G04103 vs. TAIR 10
Match: AT4G35150.1 (O-methyltransferase family protein )

HSP 1 Score: 50.8 bits (120), Expect = 4.3e-07
Identity = 28/58 (48.28%), Postives = 35/58 (60.34%), Query Frame = 0 

Query: 9   CKEAIKKREGKVIIIEAIIEE-------EGEKNKLSDVGLMFDLVMMAHTNKGKERTL 60
           CKEA+    GKV+I+E +I E       E   +KL  V L  D+VMM HT+ GKERTL
Sbjct: 236 CKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDMVMMVHTSTGKERTL 293

The following BLAST results are available for this feature:
BLAST of Clc02G04103 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038888809.11.3e-1378.85acetylserotonin O-methyltransferase-like [Benincasa hispida][more]
XP_038887354.14.9e-1378.85acetylserotonin O-methyltransferase-like isoform X1 [Benincasa hispida][more]
XP_038887539.14.9e-1378.85acetylserotonin O-methyltransferase-like isoform X2 [Benincasa hispida][more]
XP_038887355.14.9e-1378.85acetylserotonin O-methyltransferase-like isoform X2 [Benincasa hispida][more]
XP_038887538.14.9e-1378.85acetylserotonin O-methyltransferase-like isoform X1 [Benincasa hispida][more]
BLAST of Clc02G04103 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9T0039.3e-0750.00Acetylserotonin O-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=ASMT PE=1... [more]
Q6WUC21.0e-0550.00(R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum OX=3469 GN=7OMT PE=... [more]
Q7XB111.9e-0449.023'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase 1 OS=Papaver somniferu... [more]
Q7XB109.6e-0447.063'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase 2 OS=Papaver somniferu... [more]
BLAST of Clc02G04103 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A371HNY69.0e-1373.58(RS)-norcoclaurine 6-O-methyltransferase (Fragment) OS=Mucuna pruriens OX=157652... [more]
A0A0A0K6291.3e-1181.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G018730 PE=3 SV=1[more]
A0A5A7TGF83.8e-1180.00(RS)-norcoclaurine 6-O-methyltransferase-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BJE63.8e-1180.00(RS)-norcoclaurine 6-O-methyltransferase-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A4P1QS348.4e-1167.31Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_04812 PE=3 S... [more]
BLAST of Clc02G04103 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35160.16.6e-0850.00O-methyltransferase family protein [more]
AT4G35150.14.3e-0748.28O-methyltransferase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 5..59
e-value: 2.4E-10
score: 42.0
IPR001077O-methyltransferase domainPFAMPF00891Methyltransf_2coord: 7..58
e-value: 3.9E-7
score: 29.6
IPR016461O-methyltransferase COMT-typePROSITEPS51683SAM_OMT_IIcoord: 1..59
score: 12.870519

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G04103.1Clc02G04103.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019438 aromatic compound biosynthetic process
biological_process GO:0032259 methylation
molecular_function GO:0008171 O-methyltransferase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
molecular_function GO:0008168 methyltransferase activity