Clc02G03950 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G03950
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	expansin-like A2
Location	ClcChr02: 3366475 .. 3366923 (-)
RNA-Seq Expression	Clc02G03950
Synteny	Clc02G03950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTTCTTCCTCCCTCTTCTCATCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATGTACAATTTCAATCCTTACCCTTTTAAATTCTTTGATTTCTCCACTCTTAAACACCCATCCAAACCCAACCCACATAACATTTTCACAATTAACCAATTGGGTATGTTTCATTTCTTGCAGATAGAGGCGCCTGTGGCTATGGCGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTACGGCGCTGGGTGTGGCGCTTGTTTTTCAAGTAATTAATTAAACATTCTTAAAAAGTTAAAACAATCCCCTGTTTTTTAATCTTCTTTTTTTTTTTATGATTGGATTAATGCTCTGTTTTCGCAGGTAA

mRNA sequence

ATGCCTTTCTTCCTCCCTCTTCTCATCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTAA

Coding sequence (CDS)

ATGCCTTTCTTCCTCCCTCTTCTCATCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTAA

Protein sequence

MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPPLYK

Homology

[Close]

BLAST of Clc02G03950 vs. NCBI nr
Match: XP_038888279.1 (expansin-like A2 [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 6.0e-28
Identity = 62/66 (93.94%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFLPLL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLPLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. NCBI nr
Match: XP_016900448.1 (PREDICTED: expansin-like A2 [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. NCBI nr
Match: QDL52562.1 (expansin A9-like protein [Cucumis melo])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. NCBI nr
Match: XP_004153444.1 (expansin-like A2 [Cucumis sativus] >KGN43339.2 hypothetical protein Csa_020293 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. NCBI nr
Match: KAA0046629.1 (expansin-like A2 [Cucumis melo var. makuwa] >TYK23323.1 expansin-like A2 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 8.7e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. ExPASy Swiss-Prot
Match: Q9SVE5 (Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.2e-08
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 4  FLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPP 63
          FL  ++L   SSA+ACDRC+H +KAA++   SA L  GAC YG +      G+ +A +P 
Sbjct: 7  FLLSVVLLFSSSAAACDRCLHSSKAAYFSSASA-LSSGACAYGSMATGFFAGHIAAALPS 66

Query: 64 LYK 67
          +YK
Sbjct: 67 IYK 68

[Close]

BLAST of Clc02G03950 vs. ExPASy Swiss-Prot
Match: Q9LZT4 (Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.2e-08
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 4  FLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPP 63
          FL ++I    SS +ACDRC+H++KAA++   SA L  GAC YG +      G+ +A +P 
Sbjct: 6  FLIVVIFLFSSSVNACDRCLHRSKAAYFSSASA-LSSGACAYGSMATSFFAGHIAAAIPS 65

Query: 64 LYK 67
          +YK
Sbjct: 66 IYK 67

[Close]

BLAST of Clc02G03950 vs. ExPASy Swiss-Prot
Match: Q9LZT5 (Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-07
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  FFLPLLILSLFSSA-SACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIM 62
          F   ++++ LFSS+ +ACDRC+H++KA+++   SA L  GAC YG +      G+ +A +
Sbjct: 4  FLYLIVVIFLFSSSVNACDRCLHRSKASYFSSASA-LSSGACAYGPMATSFFAGHIAAAI 63

Query: 63 PPLYK 67
          P +YK
Sbjct: 64 PSIYK 67

[Close]

BLAST of Clc02G03950 vs. ExPASy Swiss-Prot
Match: Q10S70 (Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 8.2e-04
Identity = 26/65 (40.00%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 5  LPLLILSLFSS--ASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLS-NGYFSAIM 64
          L L+I++L +   AS CDRCV +++AA+Y   S  L  G+CGYG      +  G+ +A  
Sbjct: 20 LLLVIVALLAPRLASGCDRCVRRSRAAYY-TSSLTLTAGSCGYGTAAATFNGGGFLAAAG 79

Query: 65 PPLYK 67
          P LY+
Sbjct: 80 PALYR 83

[Close]

BLAST of Clc02G03950 vs. ExPASy TrEMBL
Match: A0A5D3DIA9 (Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003840 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. ExPASy TrEMBL
Match: A0A0A0K0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G019900 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. ExPASy TrEMBL
Match: A0A1S4DWU6 (expansin-like A2 OS=Cucumis melo OX=3656 GN=LOC103490236 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. ExPASy TrEMBL
Match: A0A515EIS0 (Expansin A9-like protein OS=Cucumis melo OX=3656 GN=EXPLA9 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.2e-27
Identity = 61/66 (92.42%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFFL LL LSLFSSA+ACDRC+HQAKAAFYQDE+AGLYRGACGYGDLTLQLSNGYFSAI
Sbjct: 1  MPFFLLLLFLSLFSSATACDRCIHQAKAAFYQDEAAGLYRGACGYGDLTLQLSNGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. ExPASy TrEMBL
Match: A0A6J1GM97 (expansin-like A3 OS=Cucurbita moschata OX=3662 GN=LOC111455266 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.3e-24
Identity = 55/66 (83.33%), Postives = 60/66 (90.91%), Query Frame = 0


Query: 1  MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAI 60
          MPFF P+L LSL S+A+ACDRCVHQAKAAFYQDE+AG YRGACGYGDLT  L+NGYFSAI
Sbjct: 1  MPFFFPILFLSLLSAATACDRCVHQAKAAFYQDEAAGAYRGACGYGDLTPALANGYFSAI 60

Query: 61 MPPLYK 67
          MPPLYK
Sbjct: 61 MPPLYK 66

[Close]

BLAST of Clc02G03950 vs. TAIR 10
Match: AT4G38400.1 (expansin-like A2 )

HSP 1 Score: 58.2 bits (139), Expect = 3.0e-09
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 4  FLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPP 63
          FL  ++L   SSA+ACDRC+H +KAA++   SA L  GAC YG +      G+ +A +P 
Sbjct: 7  FLLSVVLLFSSSAAACDRCLHSSKAAYFSSASA-LSSGACAYGSMATGFFAGHIAAALPS 66

Query: 64 LYK 67
          +YK
Sbjct: 67 IYK 68

[Close]

BLAST of Clc02G03950 vs. TAIR 10
Match: AT3G45970.1 (expansin-like A1 )

HSP 1 Score: 57.4 bits (137), Expect = 5.1e-09
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 4  FLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPP 63
          FL ++I    SS +ACDRC+H++KAA++   SA L  GAC YG +      G+ +A +P 
Sbjct: 6  FLIVVIFLFSSSVNACDRCLHRSKAAYFSSASA-LSSGACAYGSMATSFFAGHIAAAIPS 65

Query: 64 LYK 67
          +YK
Sbjct: 66 IYK 67

[Close]

BLAST of Clc02G03950 vs. TAIR 10
Match: AT3G45960.2 (expansin-like A3 )

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-08
Identity = 26/65 (40.00%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 3  FFLPLLILSLFSSA-SACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIM 62
          F   ++++ LFSS+ +ACDRC+H++KA+++   SA L  GAC YG +      G+ +A +
Sbjct: 4  FLYLIVVIFLFSSSVNACDRCLHRSKASYFSSASA-LSSGACAYGPMATSFFAGHIAAAI 63

Query: 63 PPLYK 67
          P +YK
Sbjct: 64 PSIYK 67

The following BLAST results are available for this feature:

BLAST of Clc02G03950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888279.1	6.0e-28	93.94	expansin-like A2 [Benincasa hispida]	[more]
XP_016900448.1	8.7e-27	92.42	PREDICTED: expansin-like A2 [Cucumis melo]	[more]
QDL52562.1	8.7e-27	92.42	expansin A9-like protein [Cucumis melo]	[more]
XP_004153444.1	8.7e-27	92.42	expansin-like A2 [Cucumis sativus] >KGN43339.2 hypothetical protein Csa_020293 [...	[more]
KAA0046629.1	8.7e-27	92.42	expansin-like A2 [Cucumis melo var. makuwa] >TYK23323.1 expansin-like A2 [Cucumi...	[more]

BLAST of Clc02G03950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVE5	4.2e-08	44.44	Expansin-like A2 OS=Arabidopsis thaliana OX=3702 GN=EXLA2 PE=2 SV=1	[more]
Q9LZT4	7.2e-08	42.86	Expansin-like A1 OS=Arabidopsis thaliana OX=3702 GN=EXLA1 PE=2 SV=1	[more]
Q9LZT5	4.6e-07	40.00	Expansin-like A3 OS=Arabidopsis thaliana OX=3702 GN=EXLA3 PE=2 SV=1	[more]
Q10S70	8.2e-04	40.00	Expansin-like A1 OS=Oryza sativa subsp. japonica OX=39947 GN=EXLA1 PE=2 SV=1	[more]

BLAST of Clc02G03950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIA9	4.2e-27	92.42	Expansin-like A2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003...	[more]
A0A0A0K0S3	4.2e-27	92.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G019900 PE=3 SV=1	[more]
A0A1S4DWU6	4.2e-27	92.42	expansin-like A2 OS=Cucumis melo OX=3656 GN=LOC103490236 PE=3 SV=1	[more]
A0A515EIS0	4.2e-27	92.42	Expansin A9-like protein OS=Cucumis melo OX=3656 GN=EXPLA9 PE=2 SV=1	[more]
A0A6J1GM97	3.3e-24	83.33	expansin-like A3 OS=Cucurbita moschata OX=3662 GN=LOC111455266 PE=3 SV=1	[more]

BLAST of Clc02G03950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38400.1	3.0e-09	44.44	expansin-like A2	[more]
AT3G45970.1	5.1e-09	42.86	expansin-like A1	[more]
AT3G45960.2	3.3e-08	40.00	expansin-like A3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036908	RlpA-like domain superfamily	GENE3D	2.40.40.10		coord: 9..66 e-value: 2.7E-5 score: 26.2
None	No IPR available	PANTHER	PTHR31692:SF4	EXPANSIN-LIKE A1-RELATED	coord: 5..66
None	No IPR available	PANTHER	PTHR31692	EXPANSIN-B3	coord: 5..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G03950.1	Clc02G03950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019953	sexual reproduction
cellular_component	GO:0005576	extracellular region