Clc02G03640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G03640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ABC transporter G family member 37
Location	ClcChr02: 3177420 .. 3177947 (+)
RNA-Seq Expression	Clc02G03640
Synteny	Clc02G03640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGATACATTGAAGAAGAAATCAGAATTAGTAGTTTTCCTAAAGTTCAAGAAACATTTATTCGAATATCTGGTTACGGCGAACAAACTGATATACATTCTCCTCAAATAATTATGGAAGAATCTTTCATATTCTCTGCTTCCTTCCCTTTGGCACCTGATATCAACTGGAAAACGAAAGCAGTAAGATCTTTTCTTTCCCTCCTTAGCTAAAACTAATTTGTCTCTGATGTTGATATTATTTGAATATGTGAATGAAATCCTTGACACTATTGAACTTGATAGCATAAATGGTATGTTGGTTCGCATAGCTGGTATTAGAAAATATGAACCTGACCTGATTAGGTTGAGGGGTGAAGCCAATGACATAATAGGTAAGAGAAGTCCATCTATCTTTAGTTTTCATTTCAGTTGGTTGGTGGTTTATCCGGACTCCAAATGGACTTAAATGACGGTGGATGTCTCATGCAGCATACGGTGTACCCAAAACCAATCTTATCCTCTTTCATTTTGTATATGAGGTAA

mRNA sequence

ATGGGTGGATACATTGAAGAAGAAATCAGAATTAGTAGTTTTCCTAAAGTTCAAGAAACATTTATTCGAATATCTGGTTACGGCGAACAAACTGATATACATTCTCCTCAAATAATTATGGAAGAATCTTTCATATTCTCTGCTTCCTTCCCTTTGGCACCTGATATCAACTGGAAAACGAAAGCATTGGTTGGTGGTTTATCCGGACTCCAAATGGACTTAAATGACGGTGGATGTCTCATGCAGCATACGGTGTACCCAAAACCAATCTTATCCTCTTTCATTTTGTATATGAGGTAA

Coding sequence (CDS)

ATGGGTGGATACATTGAAGAAGAAATCAGAATTAGTAGTTTTCCTAAAGTTCAAGAAACATTTATTCGAATATCTGGTTACGGCGAACAAACTGATATACATTCTCCTCAAATAATTATGGAAGAATCTTTCATATTCTCTGCTTCCTTCCCTTTGGCACCTGATATCAACTGGAAAACGAAAGCATTGGTTGGTGGTTTATCCGGACTCCAAATGGACTTAAATGACGGTGGATGTCTCATGCAGCATACGGTGTACCCAAAACCAATCTTATCCTCTTTCATTTTGTATATGAGGTAA

Protein sequence

MGGYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKALVGGLSGLQMDLNDGGCLMQHTVYPKPILSSFILYMR

Homology

[Close]

BLAST of Clc02G03640 vs. NCBI nr
Match: XP_038903616.1 (pleiotropic drug resistance protein 3-like isoform X2 [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSPQI +EES IFSAS  LA DI+W TKA
Sbjct: 906 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPQITVEESLIFSASLRLASDIDWNTKA 965

Query: 63  LVGGLSGLQM 73
           L+   +G QM
Sbjct: 966 LILLKTGGQM 975

[Close]

BLAST of Clc02G03640 vs. NCBI nr
Match: XP_038903615.1 (pleiotropic drug resistance protein 3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-16
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSPQI +EES IFSAS  LA DI+W TKA
Sbjct: 906 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPQITVEESLIFSASLRLASDIDWNTKA 965

[Close]

BLAST of Clc02G03640 vs. NCBI nr
Match: XP_008443151.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSP+I +EES IFSA   LAPDIN KTKA
Sbjct: 734 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPRITVEESLIFSAWLRLAPDINSKTKA 793

[Close]

BLAST of Clc02G03640 vs. NCBI nr
Match: XP_008443150.1 (PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSP+I +EES IFSA   LAPDIN KTKA
Sbjct: 920 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPRITVEESLIFSAWLRLAPDINSKTKA 979

[Close]

BLAST of Clc02G03640 vs. NCBI nr
Match: KAA0053948.1 (pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa] >TYK25456.1 pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 1.3e-15
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSP+I +EES IFSA   LAPDIN KTKA
Sbjct: 908 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPRITVEESLIFSAWLRLAPDINSKTKA 967

[Close]

BLAST of Clc02G03640 vs. ExPASy Swiss-Prot
Match: Q9LFH0 (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 6.3e-16
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 62
           GYIE +IRIS FPKVQETF R+SGY EQTDIHSP I +EES I+SA   LAP+I+  TK
Sbjct: 915 GYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTK 973

[Close]

BLAST of Clc02G03640 vs. ExPASy Swiss-Prot
Match: Q5W274 (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-15
Identity = 39/59 (66.10%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 62
           GY+E EI++  +PKVQETF R+SGY EQTDIHSPQI +EES IFSA   L P I+ KTK
Sbjct: 912 GYVEGEIKVGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLHPQIDSKTK 970

[Close]

BLAST of Clc02G03640 vs. ExPASy Swiss-Prot
Match: Q9ZUT8 (ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-15
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 62
           GYIE EIRIS F KVQETF R+SGY EQTDIHSP I +EES I+SA   L P+IN +TK
Sbjct: 878 GYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTK 936

[Close]

BLAST of Clc02G03640 vs. ExPASy Swiss-Prot
Match: Q7PC86 (ABC transporter G family member 35 OS=Arabidopsis thaliana OX=3702 GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.3e-15
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2   GGYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 61
           GGYIE ++R+S FPK QETF RISGY EQTDIHSPQ+ + ES IFSA   LA +++ + K
Sbjct: 904 GGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDK 963

Query: 62  AL 64
            +
Sbjct: 964 LM 965

[Close]

BLAST of Clc02G03640 vs. ExPASy Swiss-Prot
Match: Q9XIE2 (ABC transporter G family member 36 OS=Arabidopsis thaliana OX=3702 GN=ABCG36 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.0e-15
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 2   GGYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 61
           GGYIE ++RIS FPKVQETF RISGY EQTDIHSPQ+ + ES IFSA   L  ++    K
Sbjct: 931 GGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEK 990

Query: 62  AL 64
            +
Sbjct: 991 MM 992

[Close]

BLAST of Clc02G03640 vs. ExPASy TrEMBL
Match: A0A5A7UFY6 (Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006020 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSP+I +EES IFSA   LAPDIN KTKA
Sbjct: 908 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPRITVEESLIFSAWLRLAPDINSKTKA 967

[Close]

BLAST of Clc02G03640 vs. ExPASy TrEMBL
Match: A0A1S3B6X0 (pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSP+I +EES IFSA   LAPDIN KTKA
Sbjct: 920 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPRITVEESLIFSAWLRLAPDINSKTKA 979

[Close]

BLAST of Clc02G03640 vs. ExPASy TrEMBL
Match: A0A1S3B7C4 (pleiotropic drug resistance protein 3-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486825 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 6.5e-16
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  FPKVQETF RISGY EQTDIHSP+I +EES IFSA   LAPDIN KTKA
Sbjct: 734 GYIEGEIKIGGFPKVQETFARISGYCEQTDIHSPRITVEESLIFSAWLRLAPDINSKTKA 793

[Close]

BLAST of Clc02G03640 vs. ExPASy TrEMBL
Match: V4S2E0 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013618mg PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-15
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  +PKVQETF R+SGY EQTDIHSPQI +EES IFSA   LAP+IN KTKA
Sbjct: 890 GYIEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA 949

[Close]

BLAST of Clc02G03640 vs. ExPASy TrEMBL
Match: A0A2H5PY05 (ABC transporter domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_178040 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.5e-15
Identity = 44/60 (73.33%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTKA 62
           GYIE EI+I  +PKVQETF R+SGY EQTDIHSPQI +EES IFSA   LAP+IN KTKA
Sbjct: 302 GYIEGEIKIGGYPKVQETFARVSGYCEQTDIHSPQITVEESVIFSAWLRLAPEINSKTKA 361

[Close]

BLAST of Clc02G03640 vs. TAIR 10
Match: AT3G53480.1 (pleiotropic drug resistance 9 )

HSP 1 Score: 84.7 bits (208), Expect = 4.5e-17
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 62
           GYIE +IRIS FPKVQETF R+SGY EQTDIHSP I +EES I+SA   LAP+I+  TK
Sbjct: 915 GYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTK 973

[Close]

BLAST of Clc02G03640 vs. TAIR 10
Match: AT2G37280.1 (pleiotropic drug resistance 5 )

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-16
Identity = 41/59 (69.49%), Postives = 46/59 (77.97%), Query Frame = 0


Query: 3   GYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 62
           GYIE EIRIS F KVQETF R+SGY EQTDIHSP I +EES I+SA   L P+IN +TK
Sbjct: 878 GYIEGEIRISGFLKVQETFARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTK 936

[Close]

BLAST of Clc02G03640 vs. TAIR 10
Match: AT1G15210.1 (pleiotropic drug resistance 7 )

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-16
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2   GGYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 61
           GGYIE ++R+S FPK QETF RISGY EQTDIHSPQ+ + ES IFSA   LA +++ + K
Sbjct: 904 GGYIEGDVRVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDK 963

Query: 62  AL 64
            +
Sbjct: 964 LM 965

[Close]

BLAST of Clc02G03640 vs. TAIR 10
Match: AT1G59870.1 (ABC-2 and Plant PDR ABC-type transporter family protein )

HSP 1 Score: 81.3 bits (199), Expect = 4.9e-16
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 0


Query: 2   GGYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDINWKTK 61
           GGYIE ++RIS FPKVQETF RISGY EQTDIHSPQ+ + ES IFSA   L  ++    K
Sbjct: 931 GGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEK 990

Query: 62  AL 64
            +
Sbjct: 991 MM 992

[Close]

BLAST of Clc02G03640 vs. TAIR 10
Match: AT3G16340.1 (pleiotropic drug resistance 1 )

HSP 1 Score: 75.1 bits (183), Expect = 3.5e-14
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 2   GGYIEEEIRISSFPKVQETFIRISGYGEQTDIHSPQIIMEESFIFSASFPLAPDI 57
           GGYIE +IRIS FPK QETF RISGY EQ DIHSPQ+ ++ES I+SA   L  ++
Sbjct: 878 GGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEV 932

The following BLAST results are available for this feature:

BLAST of Clc02G03640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903616.1	1.4e-17	71.43	pleiotropic drug resistance protein 3-like isoform X2 [Benincasa hispida]	[more]
XP_038903615.1	2.1e-16	76.67	pleiotropic drug resistance protein 3-like isoform X1 [Benincasa hispida]	[more]
XP_008443151.1	1.3e-15	76.67	PREDICTED: pleiotropic drug resistance protein 3-like isoform X2 [Cucumis melo]	[more]
XP_008443150.1	1.3e-15	76.67	PREDICTED: pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo]	[more]
KAA0053948.1	1.3e-15	76.67	pleiotropic drug resistance protein 3-like isoform X1 [Cucumis melo var. makuwa]...	[more]

BLAST of Clc02G03640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LFH0	6.3e-16	69.49	ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=...	[more]
Q5W274	1.4e-15	66.10	Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 ...	[more]
Q9ZUT8	1.8e-15	69.49	ABC transporter G family member 33 OS=Arabidopsis thaliana OX=3702 GN=ABCG33 PE=...	[more]
Q7PC86	5.3e-15	59.68	ABC transporter G family member 35 OS=Arabidopsis thaliana OX=3702 GN=ABCG35 PE=...	[more]
Q9XIE2	7.0e-15	61.29	ABC transporter G family member 36 OS=Arabidopsis thaliana OX=3702 GN=ABCG36 PE=...	[more]

BLAST of Clc02G03640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UFY6	6.5e-16	76.67	Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuw...	[more]
A0A1S3B6X0	6.5e-16	76.67	pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo OX=3656 GN...	[more]
A0A1S3B7C4	6.5e-16	76.67	pleiotropic drug resistance protein 3-like isoform X2 OS=Cucumis melo OX=3656 GN...	[more]
V4S2E0	2.5e-15	73.33	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013618mg PE=3 ...	[more]
A0A2H5PY05	2.5e-15	73.33	ABC transporter domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_1780...	[more]

BLAST of Clc02G03640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53480.1	4.5e-17	69.49	pleiotropic drug resistance 9	[more]
AT2G37280.1	1.3e-16	69.49	pleiotropic drug resistance 5	[more]
AT1G15210.1	3.8e-16	59.68	pleiotropic drug resistance 7	[more]
AT1G59870.1	4.9e-16	61.29	ABC-2 and Plant PDR ABC-type transporter family protein	[more]
AT3G16340.1	3.5e-14	63.64	pleiotropic drug resistance 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR19241	ATP-BINDING CASSETTE TRANSPORTER	coord: 3..62
None	No IPR available	PANTHER	PTHR19241:SF622	PLEIOTROPIC DRUG RESISTANCE PROTEIN 3-LIKE	coord: 3..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G03640.1	Clc02G03640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding