Clc02G03240 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G03240
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	AP complex subunit sigma
Location	ClcChr02: 2846746 .. 2849317 (-)
RNA-Seq Expression	Clc02G03240
Synteny	Clc02G03240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCAAACTGAACCCGGCCCATTTTCGAGCCCGAAGCCTTTGGCGGGTAGGAATTCTGAACAAAATATATTTACAGCAGAACGACGGAGGAGAAGAAACTCTACTCTGATCGGAGAGATCGAATTTTTGTCGAGGATTTTGGATTTGATATTTTTGATTCTCGAAAGTTCACAGCAAAATGGTAAATGATTTCATTGCTTTGATTCATTTCTAGATTTTTATTGTTTCAAGGTTGAAATTGTGTTGTTCAATGCGTTTTTGTCTTCCTCGTCGTGGATCTGATTTGCTTTTTCTTTATGGGATGGTTTAATTGGTTCGTTTTTTGCTTCTGAATTGTTGTTTCGTTTTTAAGTTGATTTGGAGTGATTTCGTTGTTGTAAAGATTCAGATCTTTGGTTAGCTGACATCCGAATTGCCCAATTTTCCGTTTCTATTTGTGGTTTTGATTTGTCGTGCTGGTTCGTTTATGTGACTGCATAGTATCTGGGATTTCAGGAATAGTTCTTTTATCTTGGGTTTTGGATTTAGTCTGCTAGGTGTTTTGGGATTGTAATCATTGTCCGTCCTAACTCCCTCTTTTCTCTGTCGAGCTAATAATTTTAGGTGTAAACAAAGTTACATATTGGTTAGGGGGAGGAAGTGATCATGGATGTATCATAAGTAAGGGCAATTCTCTCCATTGATATAGGCCTAGAGTAGTTCCAAAACAATGGCAAGAGTCTATGCCCAAGGGGGACAATATTGTATCATTATAGAGATATGTGGAGGTTCCGTTGTCCTTGTCCAGACTAGAGGAGTGGCAATTCTTGTTTAACTTCTTTTGTTCTTAAGGTTGTGAGTGTGTTTCAGCCTGAATTCCTGGATCTTATTCTTGCTCTCATCTCAAGGACTTTTTTAAATTACCATAAGTTCTTAGTATTGTGGATTGGAGATCCTTTTTGTAGGGCTTAGTTGTTTGGTATCTTTGATTTGGGGTGTTTTTTGTATGCTCTTTAGCTTTTCCTGTTGCATTCTTTCTTTTTTTTTTTTTTTTCAATGAAAGATTGGTTTCTTCTCTTTGCTGGTGCTACTTAAGTTCAGTGTTTATATCTTCATCTTTTTAGTTCCCCACAAAAGCAAAGACGGCCTAATCTATATCTTGCATGGTGTTCTAACTGATGTTGGTGTAAATTTCCAGATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTAGGTCAGCTATTTGCCTCATTCAGCTTCATTTACTTTCCAAGCAATGAGAATATTTGCAAAAGCTTGTTGGCTTTCCACACATCTACAAAGTTTATTTGCTTTAACAAGACTTAGTTCCCCATGGATATATTGTCGGACTTACCCCATTATGGCATGTGCTTGTGTCTGCTCATGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGGTGCTTCATGGTTTATTAATGTGTTCTGCAACCCAAATTTTTATTTTGTCCACGTTGCCCGTTCTAAATGTGATGAATGATTCTACTGGACTGGCAATGCAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTGGAAATTATCCATCATTACGTTGAGATTTTGGACCGTTACTTTGGCAGTGTAAGTGAATTCAATTCTAGTTCTAGTTCATAAGTTGTTCGAGACTATTCTTCTTGCACCCTCTCTAAATGACTATCTAAACTGACATTTATTTTCTTCATTACTATGGTTCTCCATTTATGTCTATAGGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGTATTTACTTGTTTATATTAAATGTGCAGTTGTGCACCTTCTCTTTGATATGCACTTCATTGCCTCTGAATTACTTGCCCTCTAGCTTCTGACCAGTGAACATTTCTTGAGTGGATGTTCACATTCTTTATAAAACTTTGAATGCGTTGTTTACTTATGATTGTTATTATTGTTAAACATTGAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTTCAAGAATCAAGCAAGAAAACAGTAGCTAGATTGATAGCCGCACAGGTACTCTCTTCATCTTTGTAGTACCTTCGTTATGATTTCAATTTAGCTGATATGGTAATTGGATATTCTATTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAAGCCACCAAGTAGGAACACTCGAGTGTATGTTTCAGTTTTTGTTAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTACCTGAACTTGATCAAACAAGTGAATGCCTTATTTTTGCTTATTGCATTTGTAGTATTACACAAATTTCTTTTCTGAATTTCTAGTGATTCCATCTACGTGGCTAAATGTTTCTTGGATTGGTCCATTGTTGTTAATCACAAATACAAATGTTATTGCTTG

mRNA sequence

ATGGGCCAAACTGAACCCGGCCCATTTTCGAGCCCGAAGCCTTTGGCGGGTAGGAATTCTGAACAAAATATATTTACAGCAGAACGACGGAGGAGAAGAAACTCTACTCTGATCGGAGAGATCGAATTTTTGTCGAGGATTTTGGATTTGATATTTTTGATTCTCGAAAGTTCACAGCAAAATGATCTTTGGTTAGCTGACATCCGAATTGCCCAATTTTCCGTTTCTATTTGTGGTTTTGATTTGTCGTGCTGGTTCATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTGGAAATTATCCATCATTACGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTTCAAGAATCAAGCAAGAAAACAGTAGCTAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAAGCCACCAAGTAGGAACACTCGAGTGTATGTTTCAGTTTTTGTTAAATTGATTTGTTCTGAAGTATTGTAATTATATGTTACCTGAACTTGATCAAACAAGTGAATGCCTTATTTTTGCTTATTGCATTTGTAGTATTACACAAATTTCTTTTCTGAATTTCTAGTGATTCCATCTACGTGGCTAAATGTTTCTTGGATTGGTCCATTGTTGTTAATCACAAATACAAATGTTATTGCTTG

Coding sequence (CDS)

ATGGGCCAAACTGAACCCGGCCCATTTTCGAGCCCGAAGCCTTTGGCGGGTAGGAATTCTGAACAAAATATATTTACAGCAGAACGACGGAGGAGAAGAAACTCTACTCTGATCGGAGAGATCGAATTTTTGTCGAGGATTTTGGATTTGATATTTTTGATTCTCGAAAGTTCACAGCAAAATGATCTTTGGTTAGCTGACATCCGAATTGCCCAATTTTCCGTTTCTATTTGTGGTTTTGATTTGTCGTGCTGGTTCATTCACTTTGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGATATGCTAGTCTTTACTTTTGCATGTGCATTGATCAGGATGACAATGAATTAGAGATCCTGGAAATTATCCATCATTACGTTGAGATTTTGGACCGTTACTTTGGCAGTGTCTGTGAGTTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTTCAAGAATCAAGCAAGAAAACAGTAGCTAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCAATAAGTAACATAATTGCACAAGCCACCAAGTAG

Protein sequence

MGQTEPGPFSSPKPLAGRNSEQNIFTAERRRRRNSTLIGEIEFLSRILDLIFLILESSQQNDLWLADIRIAQFSVSICGFDLSCWFIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

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BLAST of Clc02G03240 vs. NCBI nr
Match: KAG6572201.1 (AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.8 bits (917), Expect = 7.3e-95
Identity = 196/245 (80.00%), Postives = 202/245 (82.45%), Query Frame = 0


Query: 1   MGQTEPGPFSSPKPLAGRNSEQNIFTAERRRRRNSTLIGEIEFLSRILDLIFLILESSQQ 60
           M   EP P SSPK LAGRNSEQNIFTAE RRRRN TLIGEIEF +R  DL FL ++S   
Sbjct: 1   MDSNEPDPVSSPKSLAGRNSEQNIFTAE-RRRRNCTLIGEIEFWNR--DLWFLKVQSK-- 60

Query: 61  NDLWLADIRIAQFSVSICGFDLSCWFIHFVLLISRQGKVRLTKWYSPYSQKERSKVIREL 120
                                     IHFVLLISRQGKVRLTKWYSPY+QKERSKVIREL
Sbjct: 61  -------------------------MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIREL 120

Query: 121 SGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEILEIIHHYVEILDRYF 180
           SGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELE+LE IHH+VEILDRYF
Sbjct: 121 SGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQDDNELEVLECIHHFVEILDRYF 180

Query: 181 GSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 240
           GSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI
Sbjct: 181 GSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 215

Query: 241 IAQAT 246
           IAQAT
Sbjct: 241 IAQAT 215

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BLAST of Clc02G03240 vs. NCBI nr
Match: XP_038888262.1 (AP-1 complex subunit sigma-2 [Benincasa hispida])

HSP 1 Score: 315.8 bits (808), Expect = 3.2e-82
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

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BLAST of Clc02G03240 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 315.5 bits (807), Expect = 4.2e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 79  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 138

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 139 YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 198

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 199 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

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BLAST of Clc02G03240 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 314.3 bits (804), Expect = 9.3e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

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BLAST of Clc02G03240 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 5.3e-80
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 246
           ELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 122 ELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Clc02G03240 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 1.2e-79
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 7.4e-58
Identity = 102/141 (72.34%), Postives = 126/141 (89.36%), Query Frame = 0


Query: 88  HFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRY 147
           HF+LL+SRQGK RLTKWYSP++ KE+S+  RE+  M+LNR PKLCNF+EW+  K ++KRY
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 148 ASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 207
           ASLYF +C D++DNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query: 208 LQESSKKTVARLIAAQDSLVE 229
           LQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of Clc02G03240 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-48
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 207 ELQESSKKTVARLIAAQDSLVETAKE 233
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Clc02G03240 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 1.1e-48
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 207 ELQESSKKTVARLIAAQDSLVETAKE 233
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Clc02G03240 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.0e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 79  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 138

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 139 YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 198

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 199 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Clc02G03240 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 2.0e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQDDNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 4.5e-82
Identity = 159/160 (99.38%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 1.3e-81
Identity = 157/160 (98.12%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. ExPASy TrEMBL
Match: A0A6J1I247 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 5.0e-81
Identity = 156/160 (97.50%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR
Sbjct: 2   IHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQDDNELE+LE IHH+VEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQDDNELEVLECIHHFVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 298.9 bits (764), Expect = 3.7e-81
Identity = 147/159 (92.45%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 246
           ELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 122 ELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Clc02G03240 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 297.7 bits (761), Expect = 8.3e-81
Identity = 146/160 (91.25%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG
Sbjct: 62  YASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121

Query: 207 ELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 247
           ELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 122 ELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Clc02G03240 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-57
Identity = 101/108 (93.52%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           IHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYKR
Sbjct: 2   IHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYKR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHK 195
           YASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 62  YASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of Clc02G03240 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-38
Identity = 73/140 (52.14%), Postives = 100/140 (71.43%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           I F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+R
Sbjct: 2   IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYRR 61

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++AG
Sbjct: 62  YAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 121

Query: 207 ELQESSKKTVARLIAAQDSL 227
           ELQE+SK+ +   ++  + L
Sbjct: 122 ELQETSKRAIIERMSELEKL 141

[Close]

BLAST of Clc02G03240 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 122.1 bits (305), Expect = 6.3e-28
Identity = 58/138 (42.03%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 87  IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 146
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 147 YASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 206
           YASL+F + +D D+NEL ILE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 207 ELQESSKKTVARLIAAQD 225
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of Clc02G03240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6572201.1	7.3e-95	80.00	AP-1 complex subunit sigma-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038888262.1	3.2e-82	100.00	AP-1 complex subunit sigma-2 [Benincasa hispida]	[more]
XP_008462009.1	4.2e-82	99.38	PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]	[more]
KAA0050549.1	4.2e-82	99.38	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
XP_022135730.1	9.3e-82	99.38	AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ...	[more]

BLAST of Clc02G03240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	5.3e-80	92.45	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	1.2e-79	91.25	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	7.4e-58	72.34	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	1.1e-48	64.38	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	1.1e-48	64.38	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of Clc02G03240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D5G1	2.0e-82	99.38	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3CGG1	2.0e-82	99.38	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A6J1C1K2	4.5e-82	99.38	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A0A0K1P7	1.3e-81	98.13	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]
A0A6J1I247	5.0e-81	97.50	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111468332 PE=3 SV=1	[more]

BLAST of Clc02G03240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	3.7e-81	92.45	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	8.3e-81	91.25	associated protein 19	[more]
AT4G35410.1	3.8e-57	93.52	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	5.1e-38	52.14	SNARE-like superfamily protein	[more]
AT2G19790.1	6.3e-28	42.03	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 87..225 e-value: 2.3E-53 score: 180.0
None	No IPR available	GENE3D	3.30.450.60		coord: 86..242 e-value: 1.1E-64 score: 219.0
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 87..236
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 87..236
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 88..228 e-value: 3.17958E-103 score: 293.695
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 87..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G03240.2	Clc02G03240.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity