Clc02G01610 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G01610
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Actin cytoskeleton-regulatory complex protein
Location	ClcChr02: 1536414 .. 1536926 (-)
RNA-Seq Expression	Clc02G01610
Synteny	Clc02G01610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCATCCCAATTCTCAAGAAAACAACACACACTTAACCACCACCAAATTTCCTCTATTTAACACCCAAAATCCCAAATCCCTCTCTTCCTAAGTTCACAAAAAACGATTCCCAAAATCCCCCTCAAATTGAAGAACCCATCTTCACAAACCTCTTTAAATTCAGTAAAAGCTTCTTCATTTTCAAATCCCATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGAGATTGATCTCAAGTTCTAGTTTTTTTTTTTT

mRNA sequence

CACCATCCCAATTCTCAAGAAAACAACACACACTTAACCACCACCAAATTTCCTCTATTTAACACCCAAAATCCCAAATCCCTCTCTTCCTAAGTTCACAAAAAACGATTCCCAAAATCCCCCTCAAATTGAAGAACCCATCTTCACAAACCTCTTTAAATTCAGTAAAAGCTTCTTCATTTTCAAATCCCATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGAGATTGATCTCAAGTTCTAGTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCTAAACTTTGGTTTCTTTGCCTCATTGTGGCCGAGATCTTGCTGATTCAAGCAATGGCTTCGGATCTCCTTCTGTCTGCGGCGCCGGAGCCACTAGAGACCGGGACTAGAGAAGGGTATGGAGTGGCGGAGGCGCCAGAGATCCGGCGACTGGGAAAGCACCACGGCGATGACTCTGTGGCCGGCGGGGGAGTCATCATCGGCGGCCTTGTAACGGCAATTTTTGCAGCTGTTTTCTGTTATATTCGGGTTACTAAAAAAAAAGATGGAGTTGATTCGGTTCATTGA

Protein sequence

MAKLWFLCLIVAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH

Homology

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BLAST of Clc02G01610 vs. NCBI nr
Match: KAA0031619.1 (hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK07071.1 hypothetical protein E5676_scaffold13G003890 [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 5.8e-32
Identity = 84/102 (82.35%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MAKLWFL-CLIVAEILLIQAMAS-----DLLLSAAPEPLETGTREGYGVAEAPEIRRLGK 60
           MAK   L CLIVAEILLIQAM S     DL LSAAPEP E GTREG  VAEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           HHGD SVAGGGVIIGGLVTAIFAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

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BLAST of Clc02G01610 vs. NCBI nr
Match: KAG6572323.1 (hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 138.7 bits (348), Expect = 2.7e-29
Identity = 76/101 (75.25%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 1   MAKLWFLCLIVAEILLIQAMASDLL-----LSAAPEPLETGTREGYGVAEAPEIRRLGKH 60
           MAK+  LCLI+A+ILLIQAMAS        +SAAPEP ET   EG G+AEAPEIRRLGKH
Sbjct: 1   MAKISLLCLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           H D SVAGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

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BLAST of Clc02G01610 vs. NCBI nr
Match: KAG7011935.1 (hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134.8 bits (338), Expect = 3.9e-28
Identity = 75/101 (74.26%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MAKLWFLCLIVAEILLIQAMASDLL-----LSAAPEPLETGTREGYGVAEAPEIRRLGKH 60
           MAK+  L LI+A+ILLIQAMAS        +SAAPEP ET   EG G+AEAPEIRRLGKH
Sbjct: 1   MAKISLLSLILAQILLIQAMASTATTTTSHVSAAPEPSETDNVEGPGLAEAPEIRRLGKH 60

Query: 61  HGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           H D SVAGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  HVDKSVAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 101

[Close]

BLAST of Clc02G01610 vs. NCBI nr
Match: KAE8645753.1 (hypothetical protein Csa_020263 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 4.6e-21
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 1  MAKLWFL-CLIVAEILLIQAM------ASDLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
          MAK+  L CLIV EI LIQA+       ++L LS APE  E GTREG  VAEAPEIRRLG
Sbjct: 1  MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIR 85
          KHHGD S+AGGGVIIGGLVTA+FAAVFCYIR
Sbjct: 61 KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of Clc02G01610 vs. NCBI nr
Match: KAF3964431.1 (hypothetical protein CMV_011281 [Castanea mollissima])

HSP 1 Score: 94.7 bits (234), Expect = 4.5e-16
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 11  VAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGG 70
           V  + ++  +A   + S A  P   G +E   VAEAP IRRLGKHH D SVAGGGVIIGG
Sbjct: 111 VGTLRVVARLADQPVSSVAESP--EGNKENSNVAEAPVIRRLGKHHSDKSVAGGGVIIGG 170

Query: 71  LVTAIFAAVFCYIRVTKKKDGV 93
           LVTAIFAAVFCYIRVT+K+D V
Sbjct: 171 LVTAIFAAVFCYIRVTRKRDDV 190

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BLAST of Clc02G01610 vs. ExPASy TrEMBL
Match: A0A5D3C590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003890 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 84/102 (82.35%), Postives = 86/102 (84.31%), Query Frame = 0


Query: 1   MAKLWFL-CLIVAEILLIQAMAS-----DLLLSAAPEPLETGTREGYGVAEAPEIRRLGK 60
           MAK   L CLIVAEILLIQAM S     DL LSAAPEP E GTREG  VAEAPEIRRLGK
Sbjct: 1   MAKTCLLFCLIVAEILLIQAMTSIATTTDLPLSAAPEPAEKGTREGSDVAEAPEIRRLGK 60

Query: 61  HHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           HHGD SVAGGGVIIGGLVTAIFAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  HHGDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRDGVDSVH 102

[Close]

BLAST of Clc02G01610 vs. ExPASy TrEMBL
Match: A0A0A0K3N0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28
Identity = 75/103 (72.82%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 1   MAKLWFL-CLIVAEILLIQAM------ASDLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
           MAK+  L CLIV EI LIQA+       ++L LS APE  E GTREG  VAEAPEIRRLG
Sbjct: 1   MAKICLLFCLIVGEIFLIQAITTSIATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLG 60

Query: 61  KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGVDSVH 97
           KHHGD S+AGGGVIIGGLVTA+FAAVFCYIRVT+K+DGVDSVH
Sbjct: 61  KHHGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVDSVH 103

[Close]

BLAST of Clc02G01610 vs. ExPASy TrEMBL
Match: A0A2N9IXN3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 57/118 (48.31%), Postives = 72/118 (61.02%), Query Frame = 0


Query: 1   MAKLWFLCLIVAEILLIQAMAS---------------------DLLLSAAPEPLET---- 60
           M +L   CLI+AEIL++QAMA                       ++   A +P+ +    
Sbjct: 1   MGRLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIAES 60

Query: 61  -GTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKKDGV 93
             ++E   VAEAP IRR+GKHH D S+AGGGVIIGGL TAIFA VFCYIRVT+K+DGV
Sbjct: 61  PESKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIRVTRKRDGV 118

[Close]

BLAST of Clc02G01610 vs. ExPASy TrEMBL
Match: A5BAN6 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.7e-16
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MAKLWFLCLIVAEILLIQAMAS-------DLLLSAAPEPLETGTREGYGVAEAPEIRRLG 60
          M +L  +CL++AEIL++QA+A          ++  A +P   G  E   VAEAP  RRLG
Sbjct: 1  MGRLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLEVAEAPANRRLG 60

Query: 61 KHHGDDSVAGGGVIIGGLVTAIFAAVFCYIRVTKKK 90
          KHH D S+AGGGVIIGGL TAIFAAVFCYIR+T+++
Sbjct: 61 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRRR 96

[Close]

BLAST of Clc02G01610 vs. ExPASy TrEMBL
Match: A0A7N2R9A0 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.3e-16
Identity = 51/82 (62.20%), Postives = 59/82 (71.95%), Query Frame = 0


Query: 11  VAEILLIQAMASDLLLSAAPEPLETGTREGYGVAEAPEIRRLGKHHGDDSVAGGGVIIGG 70
           V  + ++  +A   + S A  P   G +E   VAEAPEIRRLGKHH D SVAGGGVIIGG
Sbjct: 42  VGTLRVVARLADQPVSSVAGSP--EGNKEYSNVAEAPEIRRLGKHHSDKSVAGGGVIIGG 101

Query: 71  LVTAIFAAVFCYIRVTKKKDGV 93
           LVTAIFAAVFCYIRVT+K+  V
Sbjct: 102 LVTAIFAAVFCYIRVTRKRADV 121

[Close]

BLAST of Clc02G01610 vs. TAIR 10
Match: AT3G09280.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 6.3e-08
Identity = 39/96 (40.62%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 2  AKLWFLCLIVAEILLIQAMASDLLLSAAPEPLETGTREGYG-VAEAPEIRRL------GK 61
          AK   LC ++  +  + A +S+   +  P   + G  E  G  AEAPE+  L      G 
Sbjct: 3  AKHIVLCFLLTYVFSMAAASSE---AEPPATRKLGRHEWPGEEAEAPEVSHLEETVRRGH 62

Query: 62 HHG--DDSVAGGGVIIGGLVTAIFAAVFCYIRVTKK 89
          HH   + SVAGGGVI+GGL T     VFCYIR T+K
Sbjct: 63 HHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRK 95

The following BLAST results are available for this feature:

BLAST of Clc02G01610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031619.1	5.8e-32	82.35	hypothetical protein E6C27_scaffold139G003870 [Cucumis melo var. makuwa] >TYK070...	[more]
KAG6572323.1	2.7e-29	75.25	hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7011935.1	3.9e-28	74.26	hypothetical protein SDJN02_26843, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAE8645753.1	4.6e-21	71.43	hypothetical protein Csa_020263 [Cucumis sativus]	[more]
KAF3964431.1	4.5e-16	62.20	hypothetical protein CMV_011281 [Castanea mollissima]	[more]

BLAST of Clc02G01610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G01610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C590	2.8e-32	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K3N0	3.2e-28	72.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]
A0A2N9IXN3	2.8e-16	48.31	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
A5BAN6	3.7e-16	54.17	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]
A0A7N2R9A0	8.3e-16	62.20	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Clc02G01610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09280.1	6.3e-08	40.63	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	EXPRESSED PROTEIN	coord: 1..94
None	No IPR available	PANTHER	PTHR34558:SF4	EXPRESSED PROTEIN	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G01610.1	Clc02G01610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane