Clc02G00990 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G00990
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Root meristem growth factor 9-like protein
Location	ClcChr02: 1012671 .. 1014082 (-)
RNA-Seq Expression	Clc02G00990
Synteny	Clc02G00990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAACAAAGCTTCCTTTTTTTGTCATCACAATAACAAATCAAACACAAAGCACAAAAGTCCCTCCAATGGCTATGCTTCCATGCAAACGCATCGTCGTCTTCGTCCTCGTCCTCATCTTTCTTTGTTGTTTCTCAAACATGACTATAGGTAGACTTTTCGATCTAATGTCGTTTCTTTTTCTTCATTTTTATGTTTTAAGTTACGGCTAACCAACATATTAATTAACTGATTACGATAAATCAAATCGATTTTTGTTTATTTATTTCTTCTCCAATTATGTTTTTTTTTTTTTTTTTGGTTTAAAAATTAGGTTAAACTCTAACAAATAATATTAGCTAGTTGGATTATGATAAATAATTGGAATATGTTCTGTAATTTTTCTTTACCTTTATCTGACTTCGAGGTTTTAAAATATGTATTTTTATGCAATTCTTGTTTGCACAATCATATACATAAGATGGAAAATTTTTGTTTTTCTCATGTATAATATCTAGAATTTTAAACTCTAACAAATAATATTAGCAAGTAAGTTAGATGCATATAATTTATTATTTGAGAAATTTTGGAAGGTGTGTGCCAAACATAGATACATTAAAACATGACATATGTTTCTTGATGCTTGTTTTGCAAGTTTAATGGGACTATGGAAGTACCTCTTTTTTCAAAAGGATATATATTTCTTTTTTAACAAAATTAAGTTTGTTTAGAGTAAATTTACTTATTCTGTAATCTACTTTTTAAAATCTTATTTCAAAAAGAATGATTTCTAACCAGAAAGAAAACAAAACAAAAGCTAATAAGTACTCTAGTTTCGATAGAATCTTTTTTATTAAAATCATTTCTTGATCTTTCTTGAATCCAAATAGTGGGTTATTAACTTCAAGCAAAACCATACTCGAACGAGAAAAAACCCACAGAAACACTTAGAATAAGTTAAATTCTTTACCAAATCATAAAATGAACAATACAAACTCATTCTAATGAGAAGAAATTTTATGTACAATGTTTGATTTAGATCGTTGATGGGATTTTGCTCTTGATTGTGGTTTGCAGCTGCAAGAAATTTGGGAGTACCTCAGATTAAAAGTGATACTCATAATCAAAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAGGATTTTATTTGTACAATACCCAAAAATCCAAACACTTCTATTTCTTTATTATTAATTTGTATGATATTTTTACATCTGCCTTTCTCTTTTTATTTTTGGTTAAAATGAAGCTTCGAGTAATGAATTATACAGAAATGGAAGATATGAGCAAAATGTGAAATAATGGGTGGTTTCATACATGTTCAACTGTTTC

mRNA sequence

AAAAACAAAGCTTCCTTTTTTTGTCATCACAATAACAAATCAAACACAAAGCACAAAAGTCCCTCCAATGGCTATGCTTCCATGCAAACGCATCGTCGTCTTCGTCCTCGTCCTCATCTTTCTTTGTTGTTTCTCAAACATGACTATAGCTGCAAGAAATTTGGGAGTACCTCAGATTAAAAGTGATACTCATAATCAAAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAGGATTTTATTTGTACAATACCCAAAAATCCAAACACTTCTATTTCTTTATTATTAATTTGTATGATATTTTTACATCTGCCTTTCTCTTTTTATTTTTGGTTAAAATGAAGCTTCGAGTAATGAATTATACAGAAATGGAAGATATGAGCAAAATGTGAAATAATGGGTGGTTTCATACATGTTCAACTGTTTC

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATCGTCGTCTTCGTCCTCGTCCTCATCTTTCTTTGTTGTTTCTCAAACATGACTATAGCTGCAAGAAATTTGGGAGTACCTCAGATTAAAAGTGATACTCATAATCAAAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Protein sequence

MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFSSTDDLGAMDYTPASKKPPIHN

Homology

[Close]

BLAST of Clc02G00990 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 3.0e-21
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MAMLPCKRIV-VFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVIN---DDLKVH-- 60
          MAMLPCKRI+ +FVL+L+ LCCFSN  IAAR++GV ++K+++ N+KVIN   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
          DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of Clc02G00990 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106.7 bits (265), Expect = 9.6e-20
Identity = 55/71 (77.46%), Postives = 58/71 (81.69%), Query Frame = 0


Query: 11 VFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFSSTDDLGAMDY 70
          V VLVL+ LC FSN  IA R+LGVPQIK D H  K  NDDL VH+EEHFSSTDDLGAMDY
Sbjct: 7  VLVLVLVLLCSFSNKVIATRSLGVPQIKKDDHKLKG-NDDLAVHEEEHFSSTDDLGAMDY 66

Query: 71 TPASKKPPIHN 82
          TPASKKPPIHN
Sbjct: 67 TPASKKPPIHN 76

[Close]

BLAST of Clc02G00990 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 6.9e-18
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MAMLPCKRI-VVFVLVLIFLCCFSNMTIAARNLGVPQIKSD-THNQKV--INDDL-KVH- 60
          MAMLPCKRI ++F+L+LI L CFSN  IAAR++GV ++K++ +  +KV  INDD+ KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
            DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of Clc02G00990 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-15
Identity = 54/82 (65.85%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 3  MLPCKRIVVFVLV-LIFLCCFSNMTIAARNL--GVPQIKSDTHNQKVINDDLKVHDEEHF 62
          M PCKR+V+ +LV L+ L CFSN  I AR+L  GVPQIK D H+ KV + DL V DEEHF
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKV-DGDLNVDDEEHF 60

Query: 63 SSTDDLGAMDYTPASKKPPIHN 82
           ST DL AMDYT ASKKPPIHN
Sbjct: 61 MSTVDLVAMDYTQASKKPPIHN 81

[Close]

BLAST of Clc02G00990 vs. NCBI nr
Match: KAB2597277.1 (hypothetical protein D8674_000197 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MA LPCK +VV   V  FL CF ++T   R+LGV   ++    QK  +D   V  +E   
Sbjct: 1  MAALPCKNLVV---VAFFLLCFISITAQGRSLGVVSKRAGDAYQKNEDDQAVVQQDE--- 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
           ++DL AMDYTPA KKPPIHN
Sbjct: 61 -SNDLLAMDYTPARKKPPIHN 74

[Close]

BLAST of Clc02G00990 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.5e-21
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MAMLPCKRIV-VFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVIN---DDLKVH-- 60
          MAMLPCKRI+ +FVL+L+ LCCFSN  IAAR++GV ++K+++ N+KVIN   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
          DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of Clc02G00990 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.3e-18
Identity = 61/90 (67.78%), Postives = 74/90 (82.22%), Query Frame = 0


Query: 1  MAMLPCKRI-VVFVLVLIFLCCFSNMTIAARNLGVPQIKSD-THNQKV--INDDL-KVH- 60
          MAMLPCKRI ++F+L+LI L CFSN  IAAR++GV ++K++ +  +KV  INDD+ KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 --DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
            DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of Clc02G00990 vs. ExPASy TrEMBL
Match: A0A5N5F2S8 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_000197 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 39/81 (48.15%), Postives = 49/81 (60.49%), Query Frame = 0


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MA LPCK +VV   V  FL CF ++T   R+LGV   ++    QK  +D   V  +E   
Sbjct: 1  MAALPCKNLVV---VAFFLLCFISITAQGRSLGVVSKRAGDAYQKNEDDQAVVQQDE--- 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
           ++DL AMDYTPA KKPPIHN
Sbjct: 61 -SNDLLAMDYTPARKKPPIHN 74

[Close]

BLAST of Clc02G00990 vs. ExPASy TrEMBL
Match: A0A1S2YFC4 (uncharacterized protein LOC101506875 OS=Cicer arietinum OX=3827 GN=LOC101506875 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-06
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 0


Query: 12 FVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDL-KVHDEEHFSSTDDLGAMDY 71
          F+LV+ FL CF +    AR L      +DT N K + D++ K  +E+H +  DD+ +MDY
Sbjct: 9  FLLVVFFLLCFISFQARARTLKEKSKDTDTTNNKEVQDNMFKAKEEDHNNVGDDVFSMDY 68

Query: 72 TPASKKPPIHN 82
          TPA +KPPIHN
Sbjct: 69 TPARRKPPIHN 79

[Close]

BLAST of Clc02G00990 vs. ExPASy TrEMBL
Match: A0A6J5WGE6 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.6e-06
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKV--INDDLKVHDEEH 60
          MA +P K +   +LV   L CF ++T   R+LGV    SD  +QK   ++D  K  +E+H
Sbjct: 1  MAAIPFKHL---LLVAFILLCFISITAEGRSLGVVSKSSDDGHQKSHDLHDPFKQKEEDH 60

Query: 61 F----SSTDDLGAMDYTPASKKPPIHN 82
                 ++DL AMDYTPASKKPPIHN
Sbjct: 61 EGLLPDESNDLLAMDYTPASKKPPIHN 84

The following BLAST results are available for this feature:

BLAST of Clc02G00990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62102.1	3.0e-21	70.45	hypothetical protein Csa_006036 [Cucumis sativus]	[more]
KAG6571377.1	9.6e-20	77.46	hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0045905.1	6.9e-18	67.78	Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684...	[more]
KAG6605281.1	5.5e-15	65.85	hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB2597277.1	3.6e-06	48.15	hypothetical protein D8674_000197 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of Clc02G00990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G00990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMV6	1.5e-21	70.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1	[more]
A0A5A7TWX6	3.3e-18	67.78	Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5N5F2S8	1.7e-06	48.15	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A1S2YFC4	3.8e-06	45.07	uncharacterized protein LOC101506875 OS=Cicer arietinum OX=3827 GN=LOC101506875 ...	[more]
A0A6J5WGE6	8.6e-06	44.83	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS13997 PE=4 S...	[more]

BLAST of Clc02G00990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..81
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 1..81
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 1..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G00990.1	Clc02G00990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity