Clc02G00715 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G00715
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein IDA-LIKE 2
LocationClcChr02: 641670 .. 645981 (+)
RNA-Seq ExpressionClc02G00715
SyntenyClc02G00715
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTTGCAGTAGTAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAAGAAAGAAATCAAATATGGTGGCAAATTTGGGTATGTCTGCCGCAGGGAAATACAGAAAACAGAAGCTTTGGGTTTTAGGGTTTACGTTCTTATTTGGGTTTTCTACACACTATTGTTTTATCACTATTTTCAATTTTTTAATTTTTTAATATTTTGTTCATATTTTATTTCAATATAATCATTTTTTAAAATTATTTAGAGCCCCGTTTAGTCGGAGATATTTAAATCTGTGAGATGGATAAGCAAATCATAAATGTTAAATATGTGTTTGATTTACTAATTTTATATATAAAAAATTAAATTAAATAATTAATTAATTAAATGAAAGATAACAAGTAACCTAGTCATAAATTAAAATTAGTATTATTTACAATGTTATTATATTAAATAATTATTTAATCACTTAAAATTTAAAAATATTAATATGGTTGAGGGTTTTAAACGATAAAAATTGTTTGAAATATTTTCAAATATAGTAAAATGTCATTATCTATTGATATTGATAATAGTCATCTATTAGTGTTTATAGATCAATGACATTTTGCTATATTTGTAAATATGTTGGCTCATTTTGCTATATTTGAAAATAATTTTAATTAATATTAATCTATTAATTAATCGGGCTATATATTTTAGTGTTATCTCTCGCATATAAAATCCTCACATGTATGGTGGGTTTTAAAAACCCATGTCAAGTGCATTTTAAAATTTCTTGGATAATAGTATCCTAGGTTTTAAAAAGTGAAATTATGTGAAATAAACAAGGATATTAAATGTTTGTCTGAAATTCTATGGCAAAACTAAGAAACAAACGGGCCCTAGAATTATTTTTATACATTCTTATAATATAATTTTGATAAAATATCAACTCATAGAAGTTTGTGCCAATTTAAACTTTGAATATTAACTTAATCCTGAACTTTTGTAAGTGTATTAATTTGCACATTCTATTATATTTTATTTGGAAAAAAAAATATTGTGTGAAATTTATAGTTGTATCAATTAAACCAATAAACTTACATAAATTAATCAATTTGGACTCTTAGTCAGAATTTTCTTTAAAAAGTTCATTATTTACTCTAATTGTCTATTTCGTAAAATCAACATTTGAAAAGTCTACACACATTTGAGAATAAATGCATGAACAATTAGAAATGTAATTGGCTAGAATCATAAGTTTCAAAAGATATTGATCAAACAAAATTTAGAGCAGATGTAAATCACTCACGAAAATTTAGGTTTAAATTGATACCATTTTTAATTTAGAGTTTCAATTGATACAACCTCCAAAGTTTAGAAGTAAATATTTACTTTATATTTTTTTAGTTATTTGAATATTTTTATGAATTAAAATATATGATTTTTTTGAGAAGGATTAAAATGTATGGGTTAGCCTCTAATATTTGAGTGTTTTTTTAACTTAGTCAGAATGACTTAAACATTTTGAATTTAGTCTCTTCTATTTTAACAATTTTTATATATCTTAGAAATGTGGTCATCCATAAATATTGAATGTAAGGGTGTTCAAATGATCCGACAACTCGAAACTCAGACTACCCAATTTGAGTTATAAGGATTGGGTTGGGTTAGTTTAAAATTTAGGTTGAGTTAGTTTTTTTTTTTTTTTTTTTTCGGGTTGGGTTAGGTCATGTTGCAAATTTGAAAAATTCAGGTTAACCCCTCTCTCTCTCTCTATATATATATATTATAAGTTCTCATTCTAGGGTTCTTAAGGTCTCTCAACTCTCTACTCTCAACTTAAAGCTTCTGCCACTTGCCTCCAAGTGTCAACTACAGTCGTTTGTTTGCCGCTGTTTGTCTTTCGTCGTTCCTTTCACACTGTTCCTTTGCTCTCCACCACTCGTCTACCACTCAAATCCAGCTCTCTACCGTTCGTTTGTCGTAGTTTCGCCATTCGTCTATCGCCTGTTCTGTCGGTTCCTCTGCAACTTCATTCATGTATTTTTTTTTTTTAGAAAAAAAAACACACACACACACAACCCGACAACCCAATTCGAATTTTCGGGTTGGTTCAAAAAAATGTCCCCAACCCAATTCTTGTACACCCCTAATTAAATATATTATTTTTACTCAAAAAAAGAAAAAAATAGTTTACAAAATAGATAAACTATTACTATTTCTGTTATTATTAAATTAAGAAGGGAACCACACCACAATTAAGAGCAAAAAGAAAAATTAACAATTACTCATTCTCCGTTCAGATCCCTCATACCCTCTCATATACTTAAAAAAAAATGTCTATCATTTTACTTTTTAAATTTTAATAGGGTTGTTTTCAAATATAGTAAAATGAGTCCAATTATTTATAAATATAGAAAAATTTCACTGTCTATCAACGATAGACTACAATAGATTGCGATAGACAGCGAAATTTTTCTATTTTCTAAATAGTTTCATATTTTTTTCTATTTGTAATAATTTTCCATTTTATTAATAGTCCATTGTATTCATTGACGGATAATGTTTTACAAATATAACATTAATATTATAAAAAAATTATATTACATGGCAAAATTAGCCAAACTATTTATTGCCTATTGTATTCATTGATGAACCTAAGTTAATTAGTAATTGAAGTTGCAGTAGGAGCCAAGATTGTTGTGTTTGTCTTCAAGTAGAAGATTTTTGGATTTATTGAACCAAAACAAGTTGTATGTAATGGTAGATGGGTTGCTAGGGCATCATTGGAGAATTTAGAGTGTATTTGGTTTAACTTTTTAAGTGTTTATCTTTGAAAAGTCAGTTTGAAAAACGTTAGAGTGTTTGACAACCACTCAAAAATAACTTTTAAAAAAATGAATTTATGAAATAAGTTGGTTTGAGAGAAACACTTGAAATCAATTTTTTAAAAGATGAAGTGTTTAATGGTTTGTCTCATGTATAGTACATAAAATTATCAAAATACTCTTACTATTCATCTATCTCACTACCACCATATACATATGGTTGTTGTTGGCTACCACTACCTTCCGATAACCATCTATGACGACCAACTCTAGCGATCACCACCGAGAACCAACTCCAATGACCACATATGACGACCATTTTGAATGACCATGTCCAACAACCAATTCCGACAACCACCTCCAGCTACTAACGTTGATAACCATCTCCAACAACCAACTCTGACAACTACCATCAGCATCCACCATTAGCACCTAACTCTGGCAATCATCTCTTGCAACCATCTTTGATGACTAACTGTGATGACCAACCTTAGACGACCAACTCCGATGCCCATCTCTGTTGATTGCCTCTAACAATCAACTTTGACGACCAACTCTGACAACCACCTATGATGTTTTATATGAATTTTTAAATTAATAGTTATTTTTAAGTTTTCAATTAAGATTTTATTGATGGTTTCTGTCACGAGCGTCAACAAAATAAAAAACTCATGTGTCAACAAAACCCAAATTTGTAGTAGTCATAATCTAAAATAATGGTCATCTGAGTTAGTGGAGTGGCTGCCGTCGGAAGTCACCAGAGTTGGCCATTAATGGTGGTTGGATGTTGCTAGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCTCGTTGGAGGTGGTCACGTGAAGTTGGTCATCGGAGGTGAGTAACAAGGCATCCATGGTGATGAGAGTTGAGCGCACTGTTAGTAAATATGATCTAAAATGTTAGTGACATACAAAGTTGGCATCGCAAACAATGAGTTGAATTCATATCTCCCCAGACACTCCCTTAATTATTAAGATCCTTTTACACTTTAACCGACAAGAGACTTTTAACAAAAACAGATTGTCAACTCTCTCTCTCTCTCTTGTACCACTAGTTATTATAGGCTTGGGTTTTAATTTATGCCTTCAAAACTCTCTCTTTCTGCAGGTACCCTTAACCACAGAAATTAAAGGTATCCACCAGAAACACCAAAATCACTTTGTGTTGTGTCTTCTCAAATGCTCAAATTATTTGGAAGAAGGGTTGCAGATCTGATGATGATTTCTCTTCTTCTTCTATTTCTCTTCTTCATTTATTCATCAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACGAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA

mRNA sequence

ATGGAGTTTGCAGTAGTAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAAGAAAGAAATCAAATATGGTGGCAAATTTGGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCTCGTTGGAGGTGGTCACGTGAAGTTGGTCATCGGAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACGAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA

Coding sequence (CDS)

ATGGAGTTTGCAGTAGTAGAGAGGGAGTTAAGAGGAGGAGAAAGAAAATTGAGTGTGGAGATGAACCAGCGACCGATAATGGCAGCGATGGAGAGGGAGAAGGGAGAAGAAAGAAATCAAATATGGTGGCAAATTTGGAGTTGGCCATTGGCAGTGGTTGCCAAAGTTGGCCTCGTTGGAGGTGGTCACGTGAAGTTGGTCATCGGAGCTTCTTCTGTTTCTTCACATTTCTCCAATCACAACAACAACCCAACATCACTAACGAAACCCCATTTCTATGGCTTCTTTCCCAAAAGGATAATTCCAATCCCTTCTTCAACTCCTTCAAGAAAACACAATGATATTGGCTTCCAAACCTGGCCATCCCCTTAA

Protein sequence

MEFAVVERELRGGERKLSVEMNQRPIMAAMEREKGEERNQIWWQIWSWPLAVVAKVGLVGGGHVKLVIGASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP
Homology
BLAST of Clc02G00715 vs. NCBI nr
Match: XP_019092499.1 (PREDICTED: protein IDA-LIKE 4 [Camelina sativa])

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-05
Identity = 28/54 (51.85%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 70  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           +SSV     N+++N  ++ + HF GFFP R  P+P+S PSRKHNDIG Q W SP
Sbjct: 40  SSSVFYRNPNYDHNNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92

BLAST of Clc02G00715 vs. NCBI nr
Match: XP_019096306.1 (PREDICTED: protein IDA-LIKE 4-like [Camelina sativa])

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 70  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           ++SV     N+++N  ++ + HF GFFP R  P+P+S PSRKHNDIG Q W SP
Sbjct: 40  STSVFYRNPNYDHNNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92

BLAST of Clc02G00715 vs. NCBI nr
Match: KMT09205.1 (hypothetical protein BVRB_6g133070 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 27/49 (55.10%), Postives = 30/49 (61.22%), Query Frame = 0

Query: 75  SHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           +H    N  P      HF GFFPKR  P+PSS PSRKHND+G Q W SP
Sbjct: 11  THVFRFNPRPRYSNSGHFLGFFPKR-YPVPSSAPSRKHNDLGLQNWRSP 58

BLAST of Clc02G00715 vs. NCBI nr
Match: TKY73857.1 (IDA 2 [Spatholobus suberectus])

HSP 1 Score: 58.2 bits (139), Expect = 6.0e-05
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0

Query: 84  PTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           P S    HF+GFFP+R IPIP S+PS+KHNDIG Q+W SP
Sbjct: 39  PKSQHTGHFFGFFPRR-IPIPYSSPSKKHNDIGLQSWRSP 77

BLAST of Clc02G00715 vs. NCBI nr
Match: XP_019096717.1 (PREDICTED: protein IDA-LIKE 4-like [Camelina sativa])

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-05
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 0

Query: 70  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           +SSV     N++++  ++ + HF GFFP R  P+P+S PSRKHNDIG Q W SP
Sbjct: 40  SSSVFYRNPNYDHHNNTMRRGHFLGFFP-RHFPVPASAPSRKHNDIGIQAWLSP 92

BLAST of Clc02G00715 vs. ExPASy Swiss-Prot
Match: Q6DUW6 (Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 70  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           +SSV     N++++  ++ + HF GF P R +P+P+S PSRKHNDIG Q   SP
Sbjct: 41  SSSVFYRNPNYDHSNNTVRRGHFLGFLP-RHLPVPASAPSRKHNDIGIQALLSP 93

BLAST of Clc02G00715 vs. ExPASy Swiss-Prot
Match: Q6DUW9 (Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0

Query: 74  SSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTW 121
           S     HN+  +S TK  F GF P R  P+P+S PSRKHNDIG  +W
Sbjct: 46  SKPHKKHNDAVSSSTK-QFLGFLP-RHFPVPASGPSRKHNDIGLLSW 90

BLAST of Clc02G00715 vs. ExPASy TrEMBL
Match: A0A0A0LK15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302050 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.9e-15
Identity = 41/53 (77.36%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 70  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPS 123
           +S  SS+FS + NN    TKPHFYGFFPKR IPIPSSTPSRKHNDIGFQTWPS
Sbjct: 39  SSLSSSYFSKNYNNNNPTTKPHFYGFFPKRTIPIPSSTPSRKHNDIGFQTWPS 91

BLAST of Clc02G00715 vs. ExPASy TrEMBL
Match: A0A7C8Z3J5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 80  HNNNPTSLTKPHFY-GFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           H    TS    HF+ GFFPKR  P+P+S PSRKHND+G Q W SP
Sbjct: 58  HRFPSTSRNSAHFFLGFFPKRQFPVPASAPSRKHNDLGLQNWRSP 102

BLAST of Clc02G00715 vs. ExPASy TrEMBL
Match: A0A7C8Z397 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 26/45 (57.78%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 80  HNNNPTSLTKPHFY-GFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           H    TS    HF+ GFFPKR  P+P+S PSRKHND+G Q W SP
Sbjct: 57  HRFPSTSRNSAHFFLGFFPKRQFPVPASAPSRKHNDLGLQNWRSP 101

BLAST of Clc02G00715 vs. ExPASy TrEMBL
Match: A0A151TLA3 (Protein IDA-LIKE 2 OS=Cajanus cajan OX=3821 GN=KK1_024188 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.4e-05
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 0

Query: 84  PTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           P S    HF+GF PKR +PIP STPSRKHNDIG ++W SP
Sbjct: 37  PKSQHHGHFFGFLPKR-MPIPYSTPSRKHNDIGLRSWRSP 75

BLAST of Clc02G00715 vs. ExPASy TrEMBL
Match: A0A165XM75 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014344 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.4e-05
Identity = 28/58 (48.28%), Postives = 39/58 (67.24%), Query Frame = 0

Query: 71  SSVSSHFSNHNNNPTSLTKPH-----FYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           S ++SH  N+ ++ +S   P      F GF P+R IP+P+S+PSRKHNDIG Q+W SP
Sbjct: 36  SRINSHVFNYKSSSSSSIPPSSSSIGFLGFLPRR-IPLPTSSPSRKHNDIGLQSWTSP 92

BLAST of Clc02G00715 vs. TAIR 10
Match: AT3G18715.1 (inflorescence deficient in abscission (IDA)-like 4 )

HSP 1 Score: 50.8 bits (120), Expect = 8.9e-07
Identity = 25/54 (46.30%), Postives = 36/54 (66.67%), Query Frame = 0

Query: 70  ASSVSSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTWPSP 124
           +SSV     N++++  ++ + HF GF P R +P+P+S PSRKHNDIG Q   SP
Sbjct: 41  SSSVFYRNPNYDHSNNTVRRGHFLGFLP-RHLPVPASAPSRKHNDIGIQALLSP 93

BLAST of Clc02G00715 vs. TAIR 10
Match: AT5G64667.1 (inflorescence deficient in abscission (IDA)-like 2 )

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-05
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 0

Query: 74  SSHFSNHNNNPTSLTKPHFYGFFPKRIIPIPSSTPSRKHNDIGFQTW 121
           S     HN+  +S TK  F GF P R  P+P+S PSRKHNDIG  +W
Sbjct: 46  SKPHKKHNDAVSSSTK-QFLGFLP-RHFPVPASGPSRKHNDIGLLSW 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_019092499.12.1e-0551.85PREDICTED: protein IDA-LIKE 4 [Camelina sativa][more]
XP_019096306.14.6e-0550.00PREDICTED: protein IDA-LIKE 4-like [Camelina sativa][more]
KMT09205.14.6e-0555.10hypothetical protein BVRB_6g133070 [Beta vulgaris subsp. vulgaris][more]
TKY73857.16.0e-0565.00IDA 2 [Spatholobus suberectus][more]
XP_019096717.17.8e-0550.00PREDICTED: protein IDA-LIKE 4-like [Camelina sativa][more]
Match NameE-valueIdentityDescription
Q6DUW61.3e-0546.30Protein IDA-LIKE 4 OS=Arabidopsis thaliana OX=3702 GN=IDL4 PE=2 SV=1[more]
Q6DUW93.1e-0451.06Protein IDA-LIKE 2 OS=Arabidopsis thaliana OX=3702 GN=IDL2 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LK156.9e-1577.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G302050 PE=4 SV=1[more]
A0A7C8Z3J52.2e-0557.78Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A7C8Z3972.2e-0557.78Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A151TLA36.4e-0565.00Protein IDA-LIKE 2 OS=Cajanus cajan OX=3821 GN=KK1_024188 PE=4 SV=1[more]
A0A165XM756.4e-0548.28Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_014344 ... [more]
Match NameE-valueIdentityDescription
AT3G18715.18.9e-0746.30inflorescence deficient in abscission (IDA)-like 4 [more]
AT5G64667.12.2e-0551.06inflorescence deficient in abscission (IDA)-like 2 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..123
NoneNo IPR availablePANTHERPTHR33599:SF14PROTEIN IDA-LIKE 4coord: 70..123
IPR039639Protein IDA-likePANTHERPTHR33599PROTEIN IDA-LIKE 5coord: 70..123

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G00715.1Clc02G00715.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010227 floral organ abscission
cellular_component GO:0110165 cellular anatomical entity