Clc02G00345 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G00345
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Glutathione transferase
Location	ClcChr02: 377356 .. 379191 (+)
RNA-Seq Expression	Clc02G00345
Synteny	Clc02G00345

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGATGCTAAGATATTCATAGTCAATGCCGATGTCAACGTCGACAACGGCATCCTTGACAAAATAATAGATAAGAAGAGGCAGTGGTTGGTATATTATATATGTTGAGTAATAGTAGCATTGTGTTGAAATATTCTCATCCAAGCAATGCTCTCATCTTATCTCATTTATTTTTCCTTCGAGTAATAGGGTTATATTAAAGAAAATTGGTCAAATTACAAATTTGGTCCTTTTAACTGATCACTTACGTTCTTCTTATTAAAACTAAGGGATCAATTAGGTATTGTAAGGACGACAGTATAATATTGTCCATTATGCGCATAACTTTCACGGCTTTGCTTTGAGTTTTACTCGAGAGGTCTTATATTCGAGGAATCATTTCTTTATCTAGCCAAATTAGACTTTGGCCGTACTCCAATAGATATAAAATTGAATTATGTGTTTAGTAAGTCAGTTAAATCTAAGAGAATAAATAGATCAAAAACCAATTAGAATACATCAAATTGAAAGATTTAGAGACTTAGGTATTAAACAAAAGTAAAAACTTGGAGACCTCTTAGATGCACAAACTTGGAAGGTTCAATGATTAACTCTAACTTTTATTGTGTTTGTTGGTAAATTATTGTAAAACTTGATAAATAAGACCTAGGTCGTTTGGGAGCATAGGTTTCACATTTTTAATTAGGACGAGAAAGAGAAGTTTTTATTAAGAGTGAACACTAAAATCGACCAAATCGAAGTAATTGACAAAATCAAATCAAACCAAAAAATTGGTTTCTACTTAAACCAAAATGAGCTGAAGCAATTTAATTCGGTTCAATTAGGCAATCGAGTGAACGCCCCTCATTTATGCAGAGTTTTTTATATGTTTGAAACTTCTTTGGCATTAAATGATTAGATGATCAATTGTTTCTTATTACTTGCAGGCAGACTTGTTTTTGGCACCTCAACTTCACCGTGCCATTGAAACATTCAATGTTGACATGGTCTTATTTGGTTCTCTTAATTCTTTTTTTTTTTTCATGCTGAATTATAGTAAATTTGGCTTAATATTTCAAGATAATATGTAGGTGGATCTAAAATCGAATCTCAAACCATGAAGTTGATGGTACAAATTCATGTCAGTTGAGTTATACTCAAGTTGACATCTAGTTAAAATATTTTAGAAACTGCGTATGTAATCATTTTACGTAGGCTATTTAGAAAGGATTTCACACTTTAGGGGCCAAATTCGCTTTTAAGAGCTCAAGGCTAGATATAAAAACTAAATTCAAATTTGAAGTACAAAACATGTTAGTTTTTAAAGTCCATGGGAGACCAAATAGCTAGAAACTAAGGTAAAATTCTAAGGACATAAAGGTAATATGATATTTAGTACTTAAACTGACTATATATGTTAGTTGAGTATATTAGGATTTATATACAAAGTAAAGAAGGGGGTTTTTCAAGTTGGTAAAAAGGGTTTAAGAAGAATGTGAATGATAAATCAAAGTGAAACCATGGAAATTAATTAAAAATGAAAAATTTTAATAGTACAAAAATCAAATTGAATAAGTGAAACCATAAAAATCAAATTAGTAATTAATTTAATCTATTTTTTAACACCAAATTTTGGAATGATTTTTAAATATCGTTATAAAACTTTTTTTTTCCACTTAAAAAGTCATTTCAAACCGATCCTAATAAATTTTCACCGTAATTGCTAACTAGTTGTTCATGCAGTCCAAGTTTCTAATTCTATCAAGGTTGCATGAGGAATACAAGGAGTTACTAGCATTTCAAGATGAATGGCCAGAGAACCAACCCGATGCTCCTGCTCAAAACTCTTGCTAA

mRNA sequence

ATGTTAGATGCTAAGATATTCATAGTCAATGCCGATGTCAACGTCGACAACGGCATCCTTGACAAAATAATAGATAAGAAGAGGCAGTGGTTGGCAGACTTGTTTTTGGCACCTCAACTTCACCGTGCCATTGAAACATTCAATGTTGACATGTTGTTCATGCAGTCCAAGTTTCTAATTCTATCAAGGTTGCATGAGGAATACAAGGAGTTACTAGCATTTCAAGATGAATGGCCAGAGAACCAACCCGATGCTCCTGCTCAAAACTCTTGCTAA

Coding sequence (CDS)

ATGTTAGATGCTAAGATATTCATAGTCAATGCCGATGTCAACGTCGACAACGGCATCCTTGACAAAATAATAGATAAGAAGAGGCAGTGGTTGGCAGACTTGTTTTTGGCACCTCAACTTCACCGTGCCATTGAAACATTCAATGTTGACATGTTGTTCATGCAGTCCAAGTTTCTAATTCTATCAAGGTTGCATGAGGAATACAAGGAGTTACTAGCATTTCAAGATGAATGGCCAGAGAACCAACCCGATGCTCCTGCTCAAAACTCTTGCTAA

Protein sequence

MLDAKIFIVNADVNVDNGILDKIIDKKRQWLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQNSC

Homology

[Close]

BLAST of Clc02G00345 vs. NCBI nr
Match: XP_038901422.1 (glutathione S-transferase 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQLHRAIETFNVDM    SKF +LSRL+EEYKE+ AFQD  PENQ DAPAQN
Sbjct: 164 YLADLFLAPQLHRAIETFNVDM----SKFPLLSRLYEEYKEVSAFQDAAPENQTDAPAQN 221

Query: 90  SC 92
           SC
Sbjct: 224 SC 221

[Close]

BLAST of Clc02G00345 vs. NCBI nr
Match: XP_038901421.1 (glutathione S-transferase 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQLHRAIETFNVDM    SKF +LSRL+EEYKE+ AFQD  PENQ DAPAQN
Sbjct: 192 YLADLFLAPQLHRAIETFNVDM----SKFPLLSRLYEEYKEVSAFQDAAPENQTDAPAQN 249

Query: 90  SC 92
           SC
Sbjct: 252 SC 249

[Close]

BLAST of Clc02G00345 vs. NCBI nr
Match: KAA0040743.1 (glutathione S-transferase 2-like [Cucumis melo var. makuwa] >TYK02059.1 glutathione S-transferase 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.2e-15
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQLHRAIETFNVDM    SKF ILSRL+EEYK++ AF+D  PENQPDAP+QN
Sbjct: 200 YLADLFLAPQLHRAIETFNVDM----SKFPILSRLYEEYKKIAAFEDAAPENQPDAPSQN 255

[Close]

BLAST of Clc02G00345 vs. NCBI nr
Match: XP_008460870.1 (PREDICTED: glutathione S-transferase 2-like [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 6.2e-15
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQLHRAIETFNVDM    SKF ILSRL+EEYK++ AF+D  PENQPDAP+QN
Sbjct: 165 YLADLFLAPQLHRAIETFNVDM----SKFPILSRLYEEYKKIAAFEDAAPENQPDAPSQN 220

[Close]

BLAST of Clc02G00345 vs. NCBI nr
Match: XP_011649432.1 (glutathione S-transferase 2-like [Cucumis sativus] >KGN62215.1 hypothetical protein Csa_016948 [Cucumis sativus])

HSP 1 Score: 90.1 bits (222), Expect = 1.0e-14
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           ++ADLFLAPQLHRAIETFN+DM    SKF ILSRL+EEYK++ AFQD  PENQPDAP+QN
Sbjct: 165 YMADLFLAPQLHRAIETFNLDM----SKFPILSRLYEEYKKIAAFQDAAPENQPDAPSQN 220

[Close]

BLAST of Clc02G00345 vs. ExPASy Swiss-Prot
Match: O04437 (Glutathione S-transferase OS=Triticum aestivum OX=4565 GN=GSTZ1 PE=1 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.9e-09
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 0


Query: 31  LADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPA 88
           L D+ LAPQ+H AI  F +DM    +K+ ILSRLH+ Y ++ AFQ   P+NQPDAP+
Sbjct: 159 LGDVCLAPQIHAAINRFQIDM----TKYPILSRLHDAYMKIPAFQAALPQNQPDAPS 211

[Close]

BLAST of Clc02G00345 vs. ExPASy Swiss-Prot
Match: P57108 (Glutathione S-transferase zeta class OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-08
Identity = 30/56 (53.57%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDA 86
           +LADLFL PQ+H AI  FNVDM    ++F +L RLHE Y +L  FQ+  P+ QPD+
Sbjct: 168 YLADLFLEPQIHAAITRFNVDM----TQFPLLLRLHEAYSQLPEFQNAMPDKQPDS 219

[Close]

BLAST of Clc02G00345 vs. ExPASy Swiss-Prot
Match: Q9ZVQ3 (Glutathione S-transferase Z1 OS=Arabidopsis thaliana OX=3702 GN=GSTZ1 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPA 88
           +LADLFLAPQ+H AI  F ++M      +  L++ +E Y EL AFQ+  PE QPDAP+
Sbjct: 165 YLADLFLAPQIHGAINRFQINM----EPYPTLAKCYESYNELPAFQNALPEKQPDAPS 218

[Close]

BLAST of Clc02G00345 vs. ExPASy Swiss-Prot
Match: Q9ZVQ4 (Glutathione S-transferase Z2 OS=Arabidopsis thaliana OX=3702 GN=GSTZ2 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-08
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPA 88
           +LADLFLAPQ+H A   F+++M      F  L+R +E Y EL AFQ+  PE QPD P+
Sbjct: 168 YLADLFLAPQIHAAFNRFHINM----EPFPTLARFYESYNELPAFQNAVPEKQPDTPS 221

[Close]

BLAST of Clc02G00345 vs. ExPASy TrEMBL
Match: A0A5A7TCB5 (Glutathione transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold680G00420 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-15
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQLHRAIETFNVDM    SKF ILSRL+EEYK++ AF+D  PENQPDAP+QN
Sbjct: 200 YLADLFLAPQLHRAIETFNVDM----SKFPILSRLYEEYKKIAAFEDAAPENQPDAPSQN 255

[Close]

BLAST of Clc02G00345 vs. ExPASy TrEMBL
Match: A0A1S3CDE8 (Glutathione transferase OS=Cucumis melo OX=3656 GN=LOC103499616 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.0e-15
Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQLHRAIETFNVDM    SKF ILSRL+EEYK++ AF+D  PENQPDAP+QN
Sbjct: 165 YLADLFLAPQLHRAIETFNVDM----SKFPILSRLYEEYKKIAAFEDAAPENQPDAPSQN 220

[Close]

BLAST of Clc02G00345 vs. ExPASy TrEMBL
Match: A0A0A0LJY0 (Glutathione transferase OS=Cucumis sativus OX=3659 GN=Csa_2G336130 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.1e-15
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           ++ADLFLAPQLHRAIETFN+DM    SKF ILSRL+EEYK++ AFQD  PENQPDAP+QN
Sbjct: 165 YMADLFLAPQLHRAIETFNLDM----SKFPILSRLYEEYKKIAAFQDAAPENQPDAPSQN 220

[Close]

BLAST of Clc02G00345 vs. ExPASy TrEMBL
Match: A0A6J1D454 (Glutathione transferase OS=Momordica charantia OX=3673 GN=LOC111017437 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.5e-11
Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQL+RAIETFNVDM    SKF +L RL+EEY ++ AFQD  P  QPDAP+Q+
Sbjct: 161 YLADLFLAPQLYRAIETFNVDM----SKFPLLLRLNEEYDKVPAFQDASPLKQPDAPSQS 217

Query: 90  S 91
           S
Sbjct: 221 S 217

[Close]

BLAST of Clc02G00345 vs. ExPASy TrEMBL
Match: A0A2C9VM22 (Glutathione transferase OS=Manihot esculenta OX=3983 GN=MANES_06G016600 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPAQN 89
           +LADLFLAPQL++A++ FN+DM    ++F +LSRLHE Y EL AFQ+  PENQPDAPA +
Sbjct: 167 FLADLFLAPQLYQAVKRFNLDM----TQFPLLSRLHEAYNELPAFQNAMPENQPDAPASS 223

Query: 90  S 91
           +
Sbjct: 227 T 223

[Close]

BLAST of Clc02G00345 vs. TAIR 10
Match: AT2G02380.1 (glutathione S-transferase (class zeta) 2 )

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09
Identity = 29/58 (50.00%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPA 88
           +LADLFLAPQ+H A   F+++M      F  L+R +E Y EL AFQ+  PE QPD P+
Sbjct: 168 YLADLFLAPQIHAAFNRFHINM----EPFPTLARFYESYNELPAFQNAVPEKQPDTPS 221

[Close]

BLAST of Clc02G00345 vs. TAIR 10
Match: AT2G02390.3 (glutathione S-transferase zeta 1 )

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPA 88
           +LADLFLAPQ+H AI  F ++M      +  L++ +E Y EL AFQ+  PE QPDAP+
Sbjct: 172 YLADLFLAPQIHGAINRFQINM----EPYPTLAKCYESYNELPAFQNALPEKQPDAPS 225

[Close]

BLAST of Clc02G00345 vs. TAIR 10
Match: AT2G02390.1 (glutathione S-transferase zeta 1 )

HSP 1 Score: 58.2 bits (139), Expect = 4.1e-09
Identity = 29/58 (50.00%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 30  WLADLFLAPQLHRAIETFNVDMLFMQSKFLILSRLHEEYKELLAFQDEWPENQPDAPA 88
           +LADLFLAPQ+H AI  F ++M      +  L++ +E Y EL AFQ+  PE QPDAP+
Sbjct: 165 YLADLFLAPQIHGAINRFQINM----EPYPTLAKCYESYNELPAFQNALPEKQPDAPS 218

The following BLAST results are available for this feature:

BLAST of Clc02G00345 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901422.1	3.3e-16	79.03	glutathione S-transferase 2-like isoform X2 [Benincasa hispida]	[more]
XP_038901421.1	3.3e-16	79.03	glutathione S-transferase 2-like isoform X1 [Benincasa hispida]	[more]
KAA0040743.1	6.2e-15	76.67	glutathione S-transferase 2-like [Cucumis melo var. makuwa] >TYK02059.1 glutathi...	[more]
XP_008460870.1	6.2e-15	76.67	PREDICTED: glutathione S-transferase 2-like [Cucumis melo]	[more]
XP_011649432.1	1.0e-14	75.00	glutathione S-transferase 2-like [Cucumis sativus] >KGN62215.1 hypothetical prot...	[more]

BLAST of Clc02G00345 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04437	8.9e-09	52.63	Glutathione S-transferase OS=Triticum aestivum OX=4565 GN=GSTZ1 PE=1 SV=1	[more]
P57108	1.5e-08	53.57	Glutathione S-transferase zeta class OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q9ZVQ3	5.8e-08	50.00	Glutathione S-transferase Z1 OS=Arabidopsis thaliana OX=3702 GN=GSTZ1 PE=1 SV=1	[more]
Q9ZVQ4	5.8e-08	50.00	Glutathione S-transferase Z2 OS=Arabidopsis thaliana OX=3702 GN=GSTZ2 PE=3 SV=1	[more]

BLAST of Clc02G00345 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TCB5	3.0e-15	76.67	Glutathione transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CDE8	3.0e-15	76.67	Glutathione transferase OS=Cucumis melo OX=3656 GN=LOC103499616 PE=3 SV=1	[more]
A0A0A0LJY0	5.1e-15	75.00	Glutathione transferase OS=Cucumis sativus OX=3659 GN=Csa_2G336130 PE=3 SV=1	[more]
A0A6J1D454	4.5e-11	67.21	Glutathione transferase OS=Momordica charantia OX=3673 GN=LOC111017437 PE=3 SV=1	[more]
A0A2C9VM22	1.7e-10	60.66	Glutathione transferase OS=Manihot esculenta OX=3983 GN=MANES_06G016600 PE=3 SV=...	[more]

BLAST of Clc02G00345 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02380.1	4.1e-09	50.00	glutathione S-transferase (class zeta) 2	[more]
AT2G02390.3	4.1e-09	50.00	glutathione S-transferase zeta 1	[more]
AT2G02390.1	4.1e-09	50.00	glutathione S-transferase zeta 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1050.10		coord: 7..88 e-value: 8.8E-13 score: 50.5
IPR036282	Glutathione S-transferase, C-terminal domain superfamily	SUPERFAMILY	47616	GST C-terminal domain-like	coord: 31..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G00345.1	Clc02G00345.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0006559	L-phenylalanine catabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004364	glutathione transferase activity
molecular_function	GO:0016034	maleylacetoacetate isomerase activity