Clc01G26580 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G26580
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cytochrome c6, chloroplastic
Location	ClcChr01: 36608752 .. 36612567 (-)
RNA-Seq Expression	Clc01G26580
Synteny	Clc01G26580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGGTACGGGGCTTACACAAAATATTAGCAATTTTTTTAAAATTACAAATATGGCAAAGTCACCAACAATATGGTCCTAATAGTTTATCATTGATAGATTTTGCTATATTTGTAATTTTTCTAAAAGGTTGTTATATAATTAGTTATTATCCCTAAAAATGTTGCTCATTACAATTTTCCTAAAAATTATGTCTATAAATACATTTTACATCTCTTAATTTCCTTGTTTTGTTATCTATTTTTTACTATGTTTTAAAAAACCAACATAAGGTTCAAAAACTATATAAAAAAAATATTAATTTTTTCAAACATGTTTTTTATTTTGAAATTTAGCTTAAATGTAACTCTTTATAAGGTTCAAAAACTATATAAAAAATATTAATTTTTTCAAACATGTTTTTTATTTTGAAATTTAGCTTAAATGTAACTCTTTCCCGAAAAATATGAAAATCGTTGTTAAAATTTGAAAATTAAAAACAATTTTCAAAAATCGAATGATGACTTGTTCAATCAATTTAAGTCTTTTCTCTTTTTAGTACACAGTTATCCCTTTTTCTCTCAATTTCTGCCTTATTCCACGCCATTTACTCTCTTCATTTATATTTTTCAACCGCTCATTTTAATTTTCATATCACTATTATTTTTCTCTTTTGTTTTTCTTTATGTGATACTATAGTCTACAACTGCTATAAAGCTTCAAATAAATATTCCTTTTATGATTTGTAATATTTTCCCTATTCCAAACTAATTTTCCTTTCTTAATAGAGTATTGATTAAATTTAACTATTGTTAGCATATTTTTTAGGAGTGTTTTCGAATATTAAAAAATGAATCAAAATATTTAGTAAAATTTTGATACACGGTGATAAACTACTATGATAACTTATCTGTGTCATGATAAATATTTTAACGTAGTCTATCACAAGTAAATTCTGAATTTTTGCTATTTTTTATAAATATTTTTAACAATTTTATTATTTAAATTAATTTTCTTATTTTCAAACTAGGGAAGTATATTAATTACAATTTATACGCTCGAAAATCGAAATATCACGCATAAATCAAAAGTAGAGAAAGAAAGCCGTATGATATCAGCATTTATTTTGATTTGGAGTAAAAAGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTCTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGTCTCTCTCTCTTCCCTCTCTTTTCTCTGTATGTATTTCTCGCTGGAAACTCAGAGTTCCGAAGTTGTTAGTCAACCAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGTGAACCCATACCCATGCGTAACCATTGTATTCACTACTTATCTTTGTTTTTCTTTTAATTTCTTCATCGCTGTGAACGCACATTGTGAAATCTATTACACAAACGTATTCTGTTTTTTAATTAAGCGGCATGATCAAATTTTTTCCGAGAACTAGACGCAATTTGACTGTCTGGATTTTGTCAAATCCTCACTACCCTCAAATTTGGGGCCAATCTTTGAATTTTTGTCATCTTGTTTCAACAATTATCTCGCCATACCGATGCTTTTGAATGTATAGTCGGTTCGTGGATTTACAATTGGAAGCGTAAATACTGTTTCGTCGTGTTCCTAAAAGCTGAAATGATTTGAATGTTGTGGTCTTCGTTCTTGGTATACTGTCAAAGTTAATACATATTAAGCGAAAATCACTCCACATTACTTATGTAATTAGGAAACAAATGCATGTTAATACAAATTTCTTTATAGGAAAACTTTTAAAACCATGAAAATTTTAGAAGATTGTTTACTTTGATCAATTTCCTTAAACAATAATGTTTCCATAATTGGTTTTTTTTTCTTACCTCTGAGATGTCAATTTTCTTTTCTTTCGAGGAAATCTCTTTCTATTCTATTTGTATTTGAAATTTAAAAGACAGGTGTTGGAAGGCCATAAAAAATATCCTCAATATACATCCCCTTTCTCTTTACACAAATCAAAGATCTTATTGATATGCAGTTGTATCATGTATGTACTATGGTCCTGATTTGGCTTCGTCCTTGGAATTCATGTAAAAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGTTAGTGCTACTGTCTATCCTTACACTACTCTAGATAAGCATCTTAGTACATGCTAATATTAGCATGCTCATCTGGCTGTCTGTTTTAATTATAATCGTTTGCTGTTTGTTTGTTTTGAACTACCAACATCAGTGTCTTTCTTGATTTGTTTTATTCTAAATTTTTATTGACGATTCTATGGTCTTACATGTATCTTCCAAATGTTGAACTTGAAGTGTGATGGTTTCAGGTTTTTAGTTTTTCCTTTTTCCGTTCTTTCTGTGGAACATTTCTGCTATTTCTGTAGCTGACTTTTTGTTTTCTTCTCTCCTAGGGTGCAACACTCTTTTCAAGTGATCTTGAAAGGTATTCTCCTACAACTTGAGAAAACAATGAAGTTTATTATCAGTTTATGATTTCAGTCCAACGTGCATGCAACACTGCCTAGTAGTATCATGAGTTATTAGAACATGGACCTACTTTCTCTCTTCTATTCTATGTTCGATTTTAATATTAAAAGAATTATGTACTTTTCTATATTGTATGAGTGTGACCGTAGTTCTATATTGCTTAGATTATAGATGAGCGAAGATTGTAGATGCATCGATAAGGGCAATAGCTCTATTGTTATATGGACTTTTTGCTAGGGTCCGAAAAATCTACATGGTCTGAACCTAAAATGGGGAAGATCAGGCAAATATGTTTAACTGATTTTTTTCACCCTTCTTTAACTGTACAAGGAAAACTAGCTTTTTGAACATCCTGAAAGCTTGCCATAATAACAATGCTCACCTAAAGTTGTTTCAGCTTCTCTCCAGAGACGTGCGTGCCTTAAACAATTTTATTTAAAAAAGAAAAATCACCACAGTTTTATGGAGAGTCCAGATCAAATAACAGAGCTTTCAAAATTTCTCCATTTCCAGCATGCTGAAATCGATTTACCAATTGTGTTTGTGAGGTGATTGAATAAAACTGGACGATAGTGAATGGTTGTTGTCTTAGTTCTAGAGTCCAAAAGGCATCTTCTATTAATTAAAAAAGAAGGAAAAGCATCTAGAACTCTATAATTTTGTCTAATTGTTCTTTGTATAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGTAAGTTATTATTTGTTAATATTCTTCTATAAGCGGTGAAATATTTATATATATCAATGGTTGATGATGGCTTTCAGGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAG

mRNA sequence

ATGTCAGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTCTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAG

Coding sequence (CDS)

ATGTCAGATGGGACGAAGTTTTCTTGCAGAAAAACAAAGGATGAATTGGAGCGGAGCACTGTTTGTCCGACCCGCTTATCACTTTGGATTGGACAGCCACAGCCTAATTGGAGTTTGGGGCAGCAGGCACGGCAGCCACAGGCACATCCAAGAGTCCAAGACCCGCCAAAGCGCAGAGAGCCCGCCCGCGTCACGGCGTCAGAGACGAAGGAGATCCAGATGCATCTTCTCTCCGTAACTTCAAATTTTTGCCCTACTCCCCATTGCTTCCCTGTTAAGGGAAAGCGACGGATTGCAGTTTGTCAAATTCGTACACAAGTTAAGATTCTCAAGACCCTGCCTCCCCCTCTCATTGCGGTGCTTATAGCATTATCTCCCCTCAACAACACCCCAGGATGTCTTGGTCTTGCACTTGCCCAAACGGCAGAAATAGAAAGAGGAGGTGCATTGTTTAATCAAGCTTGCATTGGCTGCCATGATGGAGGGGGAAACATAATTCAGCCCGGTGCAACACTCTTTTCAAGTGATCTTGAAAGAAATGGAGCTGATGCCGAAGAGGAGATCTACCGTATTACATATTATGGGAAAGGAAGAATGCCTGGTTTTGGTGAGAACTGTAAGCCAAGGGGTCAATGCACATTTGGTCCCCGTTTGCAGGAGGAAGAAATTAGGCTTTTGGCGAAGTTTGTAAAGATACAGGCAGATCGGGGGTGGCCTAACCCATAG

Protein sequence

MSDGTKFSCRKTKDELERSTVCPTRLSLWIGQPQPNWSLGQQARQPQAHPRVQDPPKRREPARVTASETKEIQMHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP

Homology

[Close]

BLAST of Clc01G26580 vs. NCBI nr
Match: XP_038877732.1 (cytochrome c6, chloroplastic [Benincasa hispida])

HSP 1 Score: 325.1 bits (832), Expect = 5.1e-85
Identity = 154/168 (91.67%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 74  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGC 133
           MHLLS TSNFCPTPHCFP+K KRR  VCQIRTQVKIL +L PPLIAV +ALSPLN TPGC
Sbjct: 1   MHLLSATSNFCPTPHCFPLKEKRRTVVCQIRTQVKILNSLAPPLIAVFLALSPLNQTPGC 60

Query: 134 LGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY 193
             LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY
Sbjct: 61  --LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY 120

Query: 194 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVK+QADRGWPNP
Sbjct: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKVQADRGWPNP 166

[Close]

BLAST of Clc01G26580 vs. NCBI nr
Match: XP_008439440.1 (PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED: cytochrome c6, chloroplastic [Cucumis melo])

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-76
Identity = 145/171 (84.80%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 74  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNT 133
           M LLSVTS+F     +PH FP+ G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN T
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 134 PGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYR 193
           PGC  L LA+T EIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYR
Sbjct: 61  PGC--LVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYR 120

Query: 194 ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of Clc01G26580 vs. NCBI nr
Match: XP_022926876.1 (cytochrome c6, chloroplastic [Cucurbita moschata])

HSP 1 Score: 297.4 bits (760), Expect = 1.1e-76
Identity = 143/168 (85.12%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 74  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGC 133
           M  LSVTS+F  +PHCFP+K +RR AVCQ+R QVKILKTL PPLIAVLIAL PLN TPGC
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGC 60

Query: 134 LGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY 193
              ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITY
Sbjct: 61  --YALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITY 120

Query: 194 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           YGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Clc01G26580 vs. NCBI nr
Match: XP_023517564.1 (cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.0 bits (754), Expect = 5.7e-76
Identity = 142/168 (84.52%), Postives = 152/168 (90.48%), Query Frame = 0


Query: 74  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGC 133
           M  LSVTS+F  +PHCFP+K +RR AVCQ+R QV ILKTL PPLIAVLIAL PLN TPGC
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVTILKTLAPPLIAVLIALYPLNKTPGC 60

Query: 134 LGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY 193
              ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITY
Sbjct: 61  --YALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITY 120

Query: 194 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           YGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Clc01G26580 vs. NCBI nr
Match: XP_004134523.1 (cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protein Csa_003678 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 3.7e-75
Identity = 145/172 (84.30%), Postives = 153/172 (88.95%), Query Frame = 0


Query: 73  QMHLLSVTSNFC---PTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNN 132
           +MHLLSVTS+F     +P+CFP  GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN 
Sbjct: 3   EMHLLSVTSHFVAPNTSPYCFP--GKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNK 62

Query: 133 TPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIY 192
           T GC  L LA+T EIERGGALFNQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIY
Sbjct: 63  TSGC--LVLAETIEIERGGALFNQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIY 122

Query: 193 RITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           RITY GKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 123 RITYDGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 170

[Close]

BLAST of Clc01G26580 vs. ExPASy Swiss-Prot
Match: Q93VA3 (Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.3e-51
Identity = 95/131 (72.52%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 109 ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP 168
           +LK L PPL AVL+A+SP+   P  LG    QT +I+RG  LFN+ACIGCHD GGNIIQP
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPESLG----QTLDIQRGATLFNRACIGCHDTGGNIIQP 103

Query: 169 GATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAK 228
           GATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+
Sbjct: 104 GATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAE 163

Query: 229 FVKIQADRGWP 240
           FVK QAD+GWP
Sbjct: 164 FVKFQADQGWP 170

[Close]

BLAST of Clc01G26580 vs. ExPASy Swiss-Prot
Match: P25935 (Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=petJ PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-11
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 136 LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYG 195
           +A AQ A++  GG +F+  C  CH GG N++ P  TL  +DL++ G  + E I      G
Sbjct: 19  IAPAQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYGMASIEAITTQVTNG 78

Query: 196 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 239
           KG MP FG             +L  ++I  +A +V  Q+++GW
Sbjct: 79  KGAMPAFGS------------KLSADDIADVASYVLDQSEKGW 109

[Close]

BLAST of Clc01G26580 vs. ExPASy Swiss-Prot
Match: P07497 (Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=petJ PE=1 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-11
Identity = 35/103 (33.98%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 136 LALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYG 195
           +A AQ A++  GG +F+  C  CH GG N++ P  TL  +DL++ G  + E I      G
Sbjct: 19  IAPAQAADLAHGGQVFSANCAACHLGGRNVVNPAKTLQKADLDQYGMASIEAITTQVTNG 78

Query: 196 KGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 239
           KG MP FG             +L  ++I  +A +V  Q+++GW
Sbjct: 79  KGAMPAFGS------------KLSADDIADVASYVLDQSEKGW 109

[Close]

BLAST of Clc01G26580 vs. ExPASy Swiss-Prot
Match: P00110 (Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 7.4e-10
Identity = 37/98 (37.76%), Postives = 50/98 (51.02%), Query Frame = 0


Query: 142 AEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEI-YRITYYGKGRMP 201
           A+IE G  +F   C  CH GG N+I P  TL    LE NG +A   I Y++T  GK  MP
Sbjct: 1   ADIENGERIFTANCAACHAGGNNVIMPEKTLKKDALEANGMNAVSAITYQVT-NGKNAMP 60

Query: 202 GFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGW 239
                        FG RL + +I  +A +V  Q+++GW
Sbjct: 61  ------------AFGGRLSDSDIEDVANYVLSQSEQGW 85

[Close]

BLAST of Clc01G26580 vs. ExPASy Swiss-Prot
Match: P0A3X9 (Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=petJ PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.7e-09
Identity = 44/144 (30.56%), Postives = 65/144 (45.14%), Query Frame = 0


Query: 95  KRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQA 154
           KR I+VC I              IA+L++L+P            A  A++  G  +F+  
Sbjct: 3   KRFISVCAI-------------AIALLVSLTP-----------AALAADLANGAKVFSGN 62

Query: 155 CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTF 214
           C  CH GGGN++    TL    LE+ G  +E+ I     +GK  MP             F
Sbjct: 63  CAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMP------------AF 110

Query: 215 GPRLQEEEIRLLAKFVKIQADRGW 239
             RL +E+I+ +A +V  QA +GW
Sbjct: 123 AGRLTDEQIQDVAAYVLDQAAKGW 110

[Close]

BLAST of Clc01G26580 vs. ExPASy TrEMBL
Match: A0A1S3AYD3 (cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.6e-77
Identity = 145/171 (84.80%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 74  MHLLSVTSNF---CPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNT 133
           M LLSVTS+F     +PH FP+ G RR  VCQIRT VKIL+TL PPLIA+L+ LSPLN T
Sbjct: 1   MQLLSVTSDFVGPISSPHSFPLNGNRRTIVCQIRTHVKILQTLAPPLIALLLPLSPLNKT 60

Query: 134 PGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYR 193
           PGC  L LA+T EIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYR
Sbjct: 61  PGC--LVLAETTEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYR 120

Query: 194 ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 121 ITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 169

[Close]

BLAST of Clc01G26580 vs. ExPASy TrEMBL
Match: A0A6J1EG38 (cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 5.6e-77
Identity = 143/168 (85.12%), Postives = 153/168 (91.07%), Query Frame = 0


Query: 74  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGC 133
           M  LSVTS+F  +PHCFP+K +RR AVCQ+R QVKILKTL PPLIAVLIAL PLN TPGC
Sbjct: 1   MRFLSVTSDFSLSPHCFPLKVQRRTAVCQMRRQVKILKTLAPPLIAVLIALYPLNKTPGC 60

Query: 134 LGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY 193
              ALAQ+AEIERGGALF+ ACIGCHD GGNIIQPGATLFSSDLERNGAD+EEEIY+ITY
Sbjct: 61  --YALAQSAEIERGGALFSHACIGCHDAGGNIIQPGATLFSSDLERNGADSEEEIYQITY 120

Query: 194 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           YGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Clc01G26580 vs. ExPASy TrEMBL
Match: A0A6J1KPJ4 (cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.5e-74
Identity = 139/168 (82.74%), Postives = 150/168 (89.29%), Query Frame = 0


Query: 74  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGC 133
           M LLSV S+F  +PHCF +K +RR  VC++R QVK LK L PPLIAVLIAL PLN TPGC
Sbjct: 1   MRLLSVISDFSLSPHCFTLKVQRRTTVCRMRRQVKFLKALAPPLIAVLIALYPLNKTPGC 60

Query: 134 LGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY 193
              ALAQ+AEIERGGALF+ ACIGCHDGGGNIIQPGATLFSSDLERNGAD+EEEIY+ITY
Sbjct: 61  --YALAQSAEIERGGALFSHACIGCHDGGGNIIQPGATLFSSDLERNGADSEEEIYQITY 120

Query: 194 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           YGKGRMPGFGENCKPRGQCTFGPRLQEEEIR+LAKFVKIQADRGWPNP
Sbjct: 121 YGKGRMPGFGENCKPRGQCTFGPRLQEEEIRVLAKFVKIQADRGWPNP 166

[Close]

BLAST of Clc01G26580 vs. ExPASy TrEMBL
Match: A0A6J1CXZ2 (cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 7.8e-71
Identity = 135/169 (79.88%), Postives = 144/169 (85.21%), Query Frame = 0


Query: 74  MHLLSVTSNFCPTPHCFPVKGKRRIAVCQIR-TQVKILKTLPPPLIAVLIALSPLNNTPG 133
           MHLLS  S+F    HCF +KG+R  AVCQ R  Q+KI K+  PPLIAVLIALSP+  TPG
Sbjct: 1   MHLLSAISDFSIASHCFSIKGERSTAVCQKRGQQLKIPKSFAPPLIAVLIALSPITKTPG 60

Query: 134 CLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRIT 193
           C    LAQT EIERGGALF+Q+CIGCHDGGGNIIQPGATLFSSDLERNGAD EEEIY IT
Sbjct: 61  C----LAQTVEIERGGALFSQSCIGCHDGGGNIIQPGATLFSSDLERNGADEEEEIYHIT 120

Query: 194 YYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           YYGKGRMPGFGENCKPRGQCTFGPRLQE+EIRLLAKFVKIQADRGW NP
Sbjct: 121 YYGKGRMPGFGENCKPRGQCTFGPRLQEDEIRLLAKFVKIQADRGWSNP 165

[Close]

BLAST of Clc01G26580 vs. ExPASy TrEMBL
Match: A0A0A0KPD1 (Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G538600 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.5e-69
Identity = 132/150 (88.00%), Postives = 137/150 (91.33%), Query Frame = 0


Query: 92  VKGKRRIAVCQIRTQVKILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALF 151
           + GKRR  VCQIRTQVKILK L PPLIA+L+ LSPLN T GC  L LA+T EIERGGALF
Sbjct: 7   LSGKRRTPVCQIRTQVKILKALVPPLIALLLPLSPLNKTSGC--LVLAETIEIERGGALF 66

Query: 152 NQACIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQ 211
           NQ+CIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITY GKGRMPGFGENCKPRGQ
Sbjct: 67  NQSCIGCHDGGGNIIQPGATLFSSDLERNGADAEEEIYRITYDGKGRMPGFGENCKPRGQ 126

Query: 212 CTFGPRLQEEEIRLLAKFVKIQADRGWPNP 242
           CTFGPRLQEEEIRLLAKFVKIQADRGWPNP
Sbjct: 127 CTFGPRLQEEEIRLLAKFVKIQADRGWPNP 154

[Close]

BLAST of Clc01G26580 vs. TAIR 10
Match: AT5G45040.1 (Cytochrome c )

HSP 1 Score: 204.5 bits (519), Expect = 9.4e-53
Identity = 95/131 (72.52%), Postives = 109/131 (83.21%), Query Frame = 0


Query: 109 ILKTLPPPLIAVLIALSPLNNTPGCLGLALAQTAEIERGGALFNQACIGCHDGGGNIIQP 168
           +LK L PPL AVL+A+SP+   P  LG    QT +I+RG  LFN+ACIGCHD GGNIIQP
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPESLG----QTLDIQRGATLFNRACIGCHDTGGNIIQP 103

Query: 169 GATLFSSDLERNGADAEEEIYRITYYGKGRMPGFGENCKPRGQCTFGPRLQEEEIRLLAK 228
           GATLF+ DLERNG D EEEIYR+TY+GKGRMPGFGE C PRGQCTFGPRLQ+EEI+LLA+
Sbjct: 104 GATLFTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEEIKLLAE 163

Query: 229 FVKIQADRGWP 240
           FVK QAD+GWP
Sbjct: 164 FVKFQADQGWP 170

The following BLAST results are available for this feature:

BLAST of Clc01G26580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877732.1	5.1e-85	91.67	cytochrome c6, chloroplastic [Benincasa hispida]	[more]
XP_008439440.1	1.1e-76	84.80	PREDICTED: cytochrome c6, chloroplastic [Cucumis melo] >XP_008439441.1 PREDICTED...	[more]
XP_022926876.1	1.1e-76	85.12	cytochrome c6, chloroplastic [Cucurbita moschata]	[more]
XP_023517564.1	5.7e-76	84.52	cytochrome c6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_004134523.1	3.7e-75	84.30	cytochrome c6, chloroplastic [Cucumis sativus] >KAE8647784.1 hypothetical protei...	[more]

BLAST of Clc01G26580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93VA3	1.3e-51	72.52	Cytochrome c6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PETJ PE=1 SV=1	[more]
P25935	8.7e-11	33.98	Cytochrome c6 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 G...	[more]
P07497	8.7e-11	33.98	Cytochrome c6 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) ...	[more]
P00110	7.4e-10	37.76	Cytochrome c6 OS=Bumilleriopsis filiformis OX=2835 GN=petJ PE=1 SV=1	[more]
P0A3X9	3.7e-09	30.56	Cytochrome c6 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=petJ P...	[more]

BLAST of Clc01G26580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYD3	5.6e-77	84.80	cytochrome c6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103484246 PE=3 SV=1	[more]
A0A6J1EG38	5.6e-77	85.12	cytochrome c6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111433859 PE=3 ...	[more]
A0A6J1KPJ4	1.5e-74	82.74	cytochrome c6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111497114 PE=3 SV...	[more]
A0A6J1CXZ2	7.8e-71	79.88	cytochrome c6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015832 PE=3...	[more]
A0A0A0KPD1	1.5e-69	88.00	Cytochrome c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G53860...	[more]

BLAST of Clc01G26580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45040.1	9.4e-53	72.52	Cytochrome c	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 140..241 e-value: 1.7E-38 score: 132.9
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 136..240
IPR009056	Cytochrome c-like domain	PFAM	PF13442	Cytochrome_CBB3	coord: 142..208 e-value: 1.9E-10 score: 40.9
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 142..234 score: 11.261666
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 33..60
IPR023655	Cytochrome c6	PANTHER	PTHR34688	CYTOCHROME C6, CHLOROPLASTIC	coord: 100..240

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G26580.1	Clc01G26580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding