Clc01G26310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G26310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-H2 finger protein ATL74-like
Location	ClcChr01: 36392405 .. 36393937 (+)
RNA-Seq Expression	Clc01G26310
Synteny	Clc01G26310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGAATTGAACCCACCTAGCTCTCTGTCCACAAATATCTAATTTGATCATATGCCCTCCTCCAGATCTTATGTTTCTTCACCTCAACTTGTTTCACATGTGTGTTTATCTTGCTTTCTTCTCAGCCGCTTCAGCTCGCCAAAAATGCTCCGTTCTTCGTTCATGGAACCTTCCTCCTCTCCTTCCCTTAATCCATCACCAAGTGTATCTATCCCAGATGCTCGCGAGCAAGAACAAGGTGGCAATTTCAACCTCATTGTCATAGTGGTTGCAGTCGTTTGCGCCGTTGTTTGCACACTTGGTCTAAATACCATGCTGATATGTATACTTCAATGCGCCAATCACACCCTTAGACAAACAGTCCACTGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACATGGTTGCCCTGCCGACTTCAACTTACACGAATTCTGGCTCACCGACGTCGCCTTCATCAACTTCAGCCTGTGCTATCTGCCTCGTCGATTTCTCAAATGGGGATAAAATACGGGTGTTGCCAAACTGTGCTCACAGGTACCATGTCACTTGCATTGATAAATGGCTGCTGTCTCACTCTTCTTGCCCCACTTGCAGGCATCGGCTCAAGTCCAAGGATTCTATAGAACATATTGTGTAATGTCAAGTAAAATTGCACAGATCAAGAAGCAGTAGACTTAAAAGTGAATCAGGTAAGCAATAAAAACGATCACATGGATTGACTTCTTTAGAAGATGCTACCAATTTCCAAGAGTTGAGATTGATAGATGAAATTAGTTGCAGTCAGTAAGCAATAAAACTAGATTTTGGTGTTGCCTATTCTTTTGTTATCTTCTTTTGAGTCGAAGAAATGGCTAACTGTATAGAACTATCCATTGATCAAGCATCAAAAGTTAAATAGTATTGAAGGACAAACAACAGCCGCTGGACCAAAAGTAATGTATTCAAGCTTCAAAAGTTAAATAAAAGCTACTTTAAAATTGTCTCCTTTTTGAGAAGATAGAACAAAGCACTATGTGTGGTTGAACTGTGACCCCTGTCTAGAAGTGGAAGATATATAGGAGAAATTGATCACCTACGTTAATTTAAGCCTTGACTTCTACCAAAAATCTGAAAGCTAAAGTAGATCATGAGTATAATGCAAGAAATGAAACTCATTGGTTCTTTGATTGTAAAAGTTATATATATATACACACACATGCCCAACACCTGCACTTTAGAGATATCAAAGATTTTTCTTATTAAGCTCGCTTAAAAATTCAAATACGCAATCTCTGTGTAGGTGTCCCTGGGCCGCTTCTTGCATTATCATACCAAAAGTTGAGTGCAAGTCAAGAAATAAGAACCGATTGAAAAACCACAATACACTTTAAATTTGGACACAGGTTATTGGATCAGGAAAGAGAAAGAAAGAAAAAAAAAAGACATTGTAAAGGTATTTGCATTACGAATTTCCGCATTTTCCATAATCTCAATTGCAAAGCTACATAAAGCAATATGCACTAGAAGATGCATTAAGTGT

mRNA sequence

GTTGAATTGAACCCACCTAGCTCTCTGTCCACAAATATCTAATTTGATCATATGCCCTCCTCCAGATCTTATGTTTCTTCACCTCAACTTGTTTCACATGTGTGTTTATCTTGCTTTCTTCTCAGCCGCTTCAGCTCGCCAAAAATGCTCCGTTCTTCGTTCATGGAACCTTCCTCCTCTCCTTCCCTTAATCCATCACCAAGTGTATCTATCCCAGATGCTCGCGAGCAAGAACAAGGTGGCAATTTCAACCTCATTGTCATAGTGGTTGCAGTCGTTTGCGCCGTTGTTTGCACACTTGGTCTAAATACCATGCTGATATGTATACTTCAATGCGCCAATCACACCCTTAGACAAACAGTCCACTGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACATGGTTGCCCTGCCGACTTCAACTTACACGAATTCTGGCTCACCGACGTCGCCTTCATCAACTTCAGCCTGTGCTATCTGCCTCGTCGATTTCTCAAATGGGGATAAAATACGGGTGTTGCCAAACTGTGCTCACAGGTACCATGTCACTTGCATTGATAAATGGCTGCTGTCTCACTCTTCTTGCCCCACTTGCAGGCATCGGCTCAAGTCCAAGGATTCTATAGAACATATTGTGTAATGTCAAGTAAAATTGCACAGATCAAGAAGCAGTAGACTTAAAAGTGAATCAGGTGTCCCTGGGCCGCTTCTTGCATTATCATACCAAAAGTTGAGTGCAAGTCAAGAAATAAGAACCGATTGAAAAACCACAATACACTTTAAATTTGGACACAGGTTATTGGATCAGGAAAGAGAAAGAAAGAAAAAAAAAAGACATTGTAAAGGTATTTGCATTACGAATTTCCGCATTTTCCATAATCTCAATTGCAAAGCTACATAAAGCAATATGCACTAGAAGATGCATTAAGTGT

Coding sequence (CDS)

ATGCCCTCCTCCAGATCTTATGTTTCTTCACCTCAACTTGTTTCACATGTGTGTTTATCTTGCTTTCTTCTCAGCCGCTTCAGCTCGCCAAAAATGCTCCGTTCTTCGTTCATGGAACCTTCCTCCTCTCCTTCCCTTAATCCATCACCAAGTGTATCTATCCCAGATGCTCGCGAGCAAGAACAAGGTGGCAATTTCAACCTCATTGTCATAGTGGTTGCAGTCGTTTGCGCCGTTGTTTGCACACTTGGTCTAAATACCATGCTGATATGTATACTTCAATGCGCCAATCACACCCTTAGACAAACAGTCCACTGGGTGGCTTTAAGGGGACTGAACTCAGGCATGAAGAAGCAAGACATGGTTGCCCTGCCGACTTCAACTTACACGAATTCTGGCTCACCGACGTCGCCTTCATCAACTTCAGCCTGTGCTATCTGCCTCGTCGATTTCTCAAATGGGGATAAAATACGGGTGTTGCCAAACTGTGCTCACAGGTACCATGTCACTTGCATTGATAAATGGCTGCTGTCTCACTCTTCTTGCCCCACTTGCAGGCATCGGCTCAAGTCCAAGGATTCTATAGAACATATTGTGTAA

Protein sequence

MPSSRSYVSSPQLVSHVCLSCFLLSRFSSPKMLRSSFMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV

Homology

[Close]

BLAST of Clc01G26310 vs. NCBI nr
Match: KAA0052444.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] >TYK13378.1 RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 310.8 bits (795), Expect = 8.3e-81
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 32  MLRSSFMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLIC 91
           ML SSFMEPSSSPSLNPSPSVSI D RE E GGNFNLIVIVVA+VCAVVCTLGLNTMLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 92  ILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDF 151
           ILQCANH+ RQTV WVALRGLNSGMKKQD+VALPTSTYTNSGSPTSPSSTSACAICL+DF
Sbjct: 61  ILQCANHSFRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSSTSACAICLIDF 120

Query: 152 SNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV 200
           SNGD IRVLPNCAHRYHV+CIDKWLLSHSSCPTCRH+LKSKDSIEHIV
Sbjct: 121 SNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 168

[Close]

BLAST of Clc01G26310 vs. NCBI nr
Match: XP_008439485.1 (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 307.4 bits (786), Expect = 9.1e-80
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 32  MLRSSFMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLIC 91
           ML SSFMEPSSSPSLNPSPSVSI D RE E GGNFNLIVIVVA+VCAVVCTLGLNTMLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 92  ILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPT--SPSSTSACAICLV 151
           ILQCANH+LRQTV WVALRGLNSGMKKQD+VALPTSTYTNSGSPT  SPSSTSACAICL+
Sbjct: 61  ILQCANHSLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLI 120

Query: 152 DFSNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV 200
           DFSNGD IRVLPNCAHRYHV+CIDKWLLSHSSCPTCRH+LKSKDSIEHIV
Sbjct: 121 DFSNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 170

[Close]

BLAST of Clc01G26310 vs. NCBI nr
Match: KAE8647779.1 (hypothetical protein Csa_003277 [Cucumis sativus])

HSP 1 Score: 297.7 bits (761), Expect = 7.2e-77
Identity = 145/162 (89.51%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 38  MEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCAN 97
           MEPS SPSLNPSPSVSI D  E   GGNFNLIV+VVA+VCAVVCTLGLNTMLICILQCAN
Sbjct: 1   MEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLICILQCAN 60

Query: 98  HTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGDKI 157
           H+LRQTV WVALRGLNSGMKKQDMVALPTSTYTNSGSP SPSSTSACAICL+DFSNGDK+
Sbjct: 61  HSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDFSNGDKV 120

Query: 158 RVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV 200
           RVLPNCAHRYHV+CIDKWLLSHSSCPTCRH+LKSKDSI+HIV
Sbjct: 121 RVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 162

[Close]

BLAST of Clc01G26310 vs. NCBI nr
Match: ADN34219.1 (ring zinc finger [Cucumis melo subsp. melo])

HSP 1 Score: 270.8 bits (691), Expect = 9.5e-69
Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 56  DAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCANHTLRQTVHWVALRGLNSG 115
           D RE E GGNFNLIVIVVA+VCAVVCTLGLNTMLICILQCANH+LRQTV WVALRGLNSG
Sbjct: 2   DPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 61

Query: 116 MKKQDMVALPTSTYTNSGSPT--SPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVTCID 175
           MKKQD+VALPTSTYTNSGSPT  SPSSTSACAICL+DFSNGD IRVLPNCAHRYHV+CID
Sbjct: 62  MKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCID 121

Query: 176 KWLLSHSSCPTCRHRLKSKDSIEHIV 200
           KWLLSHSSCPTCRH+LKSKDSIEHIV
Sbjct: 122 KWLLSHSSCPTCRHQLKSKDSIEHIV 147

[Close]

BLAST of Clc01G26310 vs. NCBI nr
Match: XP_022977991.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 6.8e-67
Identity = 138/179 (77.09%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 27  FSSPKMLRSSFMEPSSS--PSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLG 86
           F   KML SS+MEPSSS  PS NP PSVS     +QEQG NFNL+VIV A+VCAVVCTLG
Sbjct: 8   FQLAKMLGSSYMEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVCAVVCTLG 67

Query: 87  LNTMLICILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSAC 146
           LNTML CILQCANHTLRQTV WVALRGLN GMKKQDM+ALPTSTYTNS SP     TSAC
Sbjct: 68  LNTMLTCILQCANHTLRQTVQWVALRGLNLGMKKQDMIALPTSTYTNSDSP-----TSAC 127

Query: 147 AICLVDFSNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLK----SKDSIEHIV 200
           AICLVDFSNGDK+R+LPNCAHRYHV CID+WLLSHSSCPTCRH+LK    S  SI HIV
Sbjct: 128 AICLVDFSNGDKLRMLPNCAHRYHVACIDQWLLSHSSCPTCRHQLKPPKDSATSIHHIV 181

[Close]

BLAST of Clc01G26310 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.1e-22
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 49  SPSVSIPDAREQEQGGNF-----------NLIVIVVAVVCAVVCTLGLNTMLICILQCAN 108
           +P++S  DA  +  G +            ++++I+ A++CA++C LG+N++L C+L+C  
Sbjct: 11  TPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTR 70

Query: 109 HTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGDKI 168
                         +  G+KK+ +  +P  +Y    SP      + C ICL DF  G+ +
Sbjct: 71  RFTPNEDPVDTNANVAKGIKKRALKVIPVDSY----SPELKMKATECLICLGDFVEGETV 130

Query: 169 RVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRL 190
           RVLP C H +HV CID WLLSHSSCPTCR  L
Sbjct: 131 RVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of Clc01G26310 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.4e-21
Identity = 52/135 (38.52%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 56  DAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCA-NHTLRQTVHWVALRGLNS 115
           D   ++   + N+++I+ A++CA++  LGLN++L C ++C    +       VA R   +
Sbjct: 22  DGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR---A 81

Query: 116 GMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVTCIDK 175
           G+KK+++   P + Y   GS     + + CAICL +F++G+++RVLP C H +H++CID 
Sbjct: 82  GLKKRELKKFPVAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDT 141

Query: 176 WLLSHSSCPTCRHRL 190
           WL+SHSSCP CRH L
Sbjct: 142 WLVSHSSCPNCRHSL 150

[Close]

BLAST of Clc01G26310 vs. ExPASy Swiss-Prot
Match: O22755 (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=ATL44 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.9e-21
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 55  PDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCANHTLRQTVHWVALRGLNS 114
           P   E+      +++VI+ A++CA++C  G    L  +++CA   LR+          N 
Sbjct: 15  PQPSEEMIAAESDMVVILSALLCALICVAG----LAAVVRCA--WLRRFTAGGDSPSPNK 74

Query: 115 GMKKQDMVALPTSTYT----NSGSPTSPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVT 174
           G+KK+ + +LP ST+T     SG+      ++ CAICL DF++G++IRVLP C H +HV 
Sbjct: 75  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 134

Query: 175 CIDKWLLSHSSCPTCRHRL 190
           CIDKWL+S SSCP+CR  L
Sbjct: 135 CIDKWLVSRSSCPSCRRIL 147

[Close]

BLAST of Clc01G26310 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.9e-20
Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 45  SLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICI----LQCANHTL 104
           S  PSP++    A       N +L+VI+ A++CA++C LGL  +  C+    L   N T+
Sbjct: 12  SNTPSPAIDNSTA-----ALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTV 71

Query: 105 ---RQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSST--SACAICLVDFSNGD 164
              +       +   N G+KK+ + +LP  T+    SP SP S   + CAICL +FS GD
Sbjct: 72  SGSQTQSPQPPVAAANKGLKKKVLQSLPKLTF----SPESPESEKFAECAICLAEFSAGD 131

Query: 165 KIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRL 190
           ++RVLP C H +HV CID WL SHSSCP+CR  L
Sbjct: 132 ELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156

[Close]

BLAST of Clc01G26310 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.8e-20
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 0


Query: 37  FMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCA 96
           F     SP+  PSP V        +   + N+++++  ++CA+VC+LGLN+++ C L+C+
Sbjct: 32  FHTHDQSPTPAPSPYVG-------DNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCS 91

Query: 97  NHTLRQT-VHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGD 156
           N    +       +R  N+G+K++ + +  T +Y  S     P   + CAICL +F   +
Sbjct: 92  NLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSY--STELNLPGLDTECAICLSEFVAEE 151

Query: 157 KIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRL 190
           ++++LP C H +HV CIDKWL SHSSCPTCRH L
Sbjct: 152 RVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCL 176

[Close]

BLAST of Clc01G26310 vs. ExPASy TrEMBL
Match: A0A5A7UAN6 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G0010060 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 4.0e-81
Identity = 154/168 (91.67%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 32  MLRSSFMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLIC 91
           ML SSFMEPSSSPSLNPSPSVSI D RE E GGNFNLIVIVVA+VCAVVCTLGLNTMLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 92  ILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDF 151
           ILQCANH+ RQTV WVALRGLNSGMKKQD+VALPTSTYTNSGSPTSPSSTSACAICL+DF
Sbjct: 61  ILQCANHSFRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSSTSACAICLIDF 120

Query: 152 SNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV 200
           SNGD IRVLPNCAHRYHV+CIDKWLLSHSSCPTCRH+LKSKDSIEHIV
Sbjct: 121 SNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 168

[Close]

BLAST of Clc01G26310 vs. ExPASy TrEMBL
Match: A0A1S3AYW1 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 4.4e-80
Identity = 155/170 (91.18%), Postives = 161/170 (94.71%), Query Frame = 0


Query: 32  MLRSSFMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLIC 91
           ML SSFMEPSSSPSLNPSPSVSI D RE E GGNFNLIVIVVA+VCAVVCTLGLNTMLIC
Sbjct: 1   MLTSSFMEPSSSPSLNPSPSVSIMDPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLIC 60

Query: 92  ILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPT--SPSSTSACAICLV 151
           ILQCANH+LRQTV WVALRGLNSGMKKQD+VALPTSTYTNSGSPT  SPSSTSACAICL+
Sbjct: 61  ILQCANHSLRQTVQWVALRGLNSGMKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLI 120

Query: 152 DFSNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV 200
           DFSNGD IRVLPNCAHRYHV+CIDKWLLSHSSCPTCRH+LKSKDSIEHIV
Sbjct: 121 DFSNGDTIRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIEHIV 170

[Close]

BLAST of Clc01G26310 vs. ExPASy TrEMBL
Match: A0A0A0KJ24 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 1.7e-79
Identity = 150/168 (89.29%), Postives = 158/168 (94.05%), Query Frame = 0


Query: 32  MLRSSFMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLIC 91
           ML SSFMEPS SPSLNPSPSVSI D  E   GGNFNLIV+VVA+VCAVVCTLGLNTMLIC
Sbjct: 1   MLASSFMEPSPSPSLNPSPSVSITDPHEHVLGGNFNLIVLVVAIVCAVVCTLGLNTMLIC 60

Query: 92  ILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDF 151
           ILQCANH+LRQTV WVALRGLNSGMKKQDMVALPTSTYTNSGSP SPSSTSACAICL+DF
Sbjct: 61  ILQCANHSLRQTVQWVALRGLNSGMKKQDMVALPTSTYTNSGSPISPSSTSACAICLIDF 120

Query: 152 SNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLKSKDSIEHIV 200
           SNGDK+RVLPNCAHRYHV+CIDKWLLSHSSCPTCRH+LKSKDSI+HIV
Sbjct: 121 SNGDKVRVLPNCAHRYHVSCIDKWLLSHSSCPTCRHQLKSKDSIDHIV 168

[Close]

BLAST of Clc01G26310 vs. ExPASy TrEMBL
Match: E5GCL9 (Ring zinc finger OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.6e-69
Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 56  DAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCANHTLRQTVHWVALRGLNSG 115
           D RE E GGNFNLIVIVVA+VCAVVCTLGLNTMLICILQCANH+LRQTV WVALRGLNSG
Sbjct: 2   DPREHELGGNFNLIVIVVAIVCAVVCTLGLNTMLICILQCANHSLRQTVQWVALRGLNSG 61

Query: 116 MKKQDMVALPTSTYTNSGSPT--SPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVTCID 175
           MKKQD+VALPTSTYTNSGSPT  SPSSTSACAICL+DFSNGD IRVLPNCAHRYHV+CID
Sbjct: 62  MKKQDVVALPTSTYTNSGSPTSPSPSSTSACAICLIDFSNGDTIRVLPNCAHRYHVSCID 121

Query: 176 KWLLSHSSCPTCRHRLKSKDSIEHIV 200
           KWLLSHSSCPTCRH+LKSKDSIEHIV
Sbjct: 122 KWLLSHSSCPTCRHQLKSKDSIEHIV 147

[Close]

BLAST of Clc01G26310 vs. ExPASy TrEMBL
Match: A0A6J1ILJ0 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.3e-67
Identity = 138/179 (77.09%), Postives = 147/179 (82.12%), Query Frame = 0


Query: 27  FSSPKMLRSSFMEPSSS--PSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLG 86
           F   KML SS+MEPSSS  PS NP PSVS     +QEQG NFNL+VIV A+VCAVVCTLG
Sbjct: 8   FQLAKMLGSSYMEPSSSPTPSFNPLPSVSFAYPHDQEQGSNFNLVVIVAAIVCAVVCTLG 67

Query: 87  LNTMLICILQCANHTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSAC 146
           LNTML CILQCANHTLRQTV WVALRGLN GMKKQDM+ALPTSTYTNS SP     TSAC
Sbjct: 68  LNTMLTCILQCANHTLRQTVQWVALRGLNLGMKKQDMIALPTSTYTNSDSP-----TSAC 127

Query: 147 AICLVDFSNGDKIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRLK----SKDSIEHIV 200
           AICLVDFSNGDK+R+LPNCAHRYHV CID+WLLSHSSCPTCRH+LK    S  SI HIV
Sbjct: 128 AICLVDFSNGDKLRMLPNCAHRYHVACIDQWLLSHSSCPTCRHQLKPPKDSATSIHHIV 181

[Close]

BLAST of Clc01G26310 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-23
Identity = 55/152 (36.18%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 49  SPSVSIPDAREQEQGGNF-----------NLIVIVVAVVCAVVCTLGLNTMLICILQCAN 108
           +P++S  DA  +  G +            ++++I+ A++CA++C LG+N++L C+L+C  
Sbjct: 11  TPTISATDANPRTLGDSVSNNKNIASMDTHMVIILAALLCALICALGINSVLRCVLRCTR 70

Query: 109 HTLRQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGDKI 168
                         +  G+KK+ +  +P  +Y    SP      + C ICL DF  G+ +
Sbjct: 71  RFTPNEDPVDTNANVAKGIKKRALKVIPVDSY----SPELKMKATECLICLGDFVEGETV 130

Query: 169 RVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRL 190
           RVLP C H +HV CID WLLSHSSCPTCR  L
Sbjct: 131 RVLPKCNHGFHVKCIDTWLLSHSSCPTCRQSL 158

[Close]

BLAST of Clc01G26310 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.4e-22
Identity = 52/135 (38.52%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 56  DAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCA-NHTLRQTVHWVALRGLNS 115
           D   ++   + N+++I+ A++CA++  LGLN++L C ++C    +       VA R   +
Sbjct: 22  DGYTRDMNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADR---A 81

Query: 116 GMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVTCIDK 175
           G+KK+++   P + Y   GS     + + CAICL +F++G+++RVLP C H +H++CID 
Sbjct: 82  GLKKRELKKFPVAEY---GSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDT 141

Query: 176 WLLSHSSCPTCRHRL 190
           WL+SHSSCP CRH L
Sbjct: 142 WLVSHSSCPNCRHSL 150

[Close]

BLAST of Clc01G26310 vs. TAIR 10
Match: AT2G17450.1 (RING-H2 finger A3A )

HSP 1 Score: 102.4 bits (254), Expect = 4.2e-22
Identity = 56/139 (40.29%), Postives = 84/139 (60.43%), Query Frame = 0


Query: 55  PDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCANHTLRQTVHWVALRGLNS 114
           P   E+      +++VI+ A++CA++C  G    L  +++CA   LR+          N 
Sbjct: 15  PQPSEEMIAAESDMVVILSALLCALICVAG----LAAVVRCA--WLRRFTAGGDSPSPNK 74

Query: 115 GMKKQDMVALPTSTYT----NSGSPTSPSSTSACAICLVDFSNGDKIRVLPNCAHRYHVT 174
           G+KK+ + +LP ST+T     SG+      ++ CAICL DF++G++IRVLP C H +HV 
Sbjct: 75  GLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSFHVE 134

Query: 175 CIDKWLLSHSSCPTCRHRL 190
           CIDKWL+S SSCP+CR  L
Sbjct: 135 CIDKWLVSRSSCPSCRRIL 147

[Close]

BLAST of Clc01G26310 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-21
Identity = 63/154 (40.91%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 45  SLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICI----LQCANHTL 104
           S  PSP++    A       N +L+VI+ A++CA++C LGL  +  C+    L   N T+
Sbjct: 12  SNTPSPAIDNSTA-----ALNSDLVVILAALLCALICVLGLIAVSRCVWLRRLAAGNRTV 71

Query: 105 ---RQTVHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSST--SACAICLVDFSNGD 164
              +       +   N G+KK+ + +LP  T+    SP SP S   + CAICL +FS GD
Sbjct: 72  SGSQTQSPQPPVAAANKGLKKKVLQSLPKLTF----SPESPESEKFAECAICLAEFSAGD 131

Query: 165 KIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRL 190
           ++RVLP C H +HV CID WL SHSSCP+CR  L
Sbjct: 132 ELRVLPQCGHGFHVACIDTWLGSHSSCPSCRQIL 156

[Close]

BLAST of Clc01G26310 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 99.8 bits (247), Expect = 2.7e-21
Identity = 57/154 (37.01%), Postives = 91/154 (59.09%), Query Frame = 0


Query: 37  FMEPSSSPSLNPSPSVSIPDAREQEQGGNFNLIVIVVAVVCAVVCTLGLNTMLICILQCA 96
           F     SP+  PSP V        +   + N+++++  ++CA+VC+LGLN+++ C L+C+
Sbjct: 32  FHTHDQSPTPAPSPYVG-------DNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCS 91

Query: 97  NHTLRQT-VHWVALRGLNSGMKKQDMVALPTSTYTNSGSPTSPSSTSACAICLVDFSNGD 156
           N    +       +R  N+G+K++ + +  T +Y  S     P   + CAICL +F   +
Sbjct: 92  NLVPSEAGGDNYPVRLTNTGVKRKALKSFQTVSY--STELNLPGLDTECAICLSEFVAEE 151

Query: 157 KIRVLPNCAHRYHVTCIDKWLLSHSSCPTCRHRL 190
           ++++LP C H +HV CIDKWL SHSSCPTCRH L
Sbjct: 152 RVKLLPTCHHGFHVRCIDKWLSSHSSCPTCRHCL 176

The following BLAST results are available for this feature:

BLAST of Clc01G26310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052444.1	8.3e-81	91.67	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa] >TYK13378.1 RING-H2...	[more]
XP_008439485.1	9.1e-80	91.18	PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo]	[more]
KAE8647779.1	7.2e-77	89.51	hypothetical protein Csa_003277 [Cucumis sativus]	[more]
ADN34219.1	9.5e-69	91.10	ring zinc finger [Cucumis melo subsp. melo]	[more]
XP_022977991.1	6.8e-67	77.09	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]

BLAST of Clc01G26310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FLC6	4.1e-22	36.18	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9LZV8	3.4e-21	38.52	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
O22755	5.9e-21	40.29	Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LM69	2.9e-20	40.91	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]
Q6NQG7	3.8e-20	37.01	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]

BLAST of Clc01G26310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UAN6	4.0e-81	91.67	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3AYW1	4.4e-80	91.18	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103484271 PE=4 S...	[more]
A0A0A0KJ24	1.7e-79	89.29	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G526420 P...	[more]
E5GCL9	4.6e-69	91.10	Ring zinc finger OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A6J1ILJ0	3.3e-67	77.09	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111478116 PE...	[more]

BLAST of Clc01G26310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05280.1	2.9e-23	36.18	RING/U-box superfamily protein	[more]
AT5G01880.1	2.4e-22	38.52	RING/U-box superfamily protein	[more]
AT2G17450.1	4.2e-22	40.29	RING-H2 finger A3A	[more]
AT1G20823.1	2.1e-21	40.91	RING/U-box superfamily protein	[more]
AT1G49230.1	2.7e-21	37.01	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 144..185 e-value: 3.4E-6 score: 36.6
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 143..186 e-value: 4.4E-13 score: 49.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 144..186 score: 12.017182
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 105..192 e-value: 1.1E-21 score: 78.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..57
None	No IPR available	PANTHER	PTHR45798:SF33	OS06G0666500 PROTEIN	coord: 55..196
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 55..196
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 144..186 e-value: 2.67448E-16 score: 67.7121
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 143..192

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G26310.1	Clc01G26310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane