Clc01G25710 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G25710
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	PSI-K
Location	ClcChr01: 35865536 .. 35867189 (+)
RNA-Seq Expression	Clc01G25710
Synteny	Clc01G25710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTACCATGATGACTTCGATCCCTCAGTTTAATGGGCTCAGGCCCACTGTTTCAGTGGCTCCGGTTCGCAGCCTGGTAAGTCGCCGTCTCCGCCGTAGCCGTTGCCGTCGCTGTCGGCTTTGAATGATAGGAAAGAGGCTGACATTTGATTTTGCAGGTGGCGGTGCAACCGCTGAGGCGGAGGGGCGGCGGCGCTCTCAGTGCTCGTTGTGGTGATTACATTGGCTCACCCACCAACTTGGTAACTATCAATTTTCACTAATTTTTTAATTTCGAAATTATTTTTTATGTTTTTGTTAATAGTTATTTTGTCTTTTTTCTTTTTGCAAAGGTTTTATTTTTGTCTTCTAAATTTTAAAGATTTATATAATCCCTCGAATTTTGATATCATGAATATCGATGGTAGAAATTGAGGATGAAATATAGGAGTGCAGTGATAGAAAAATAGAAACGAAAGTTAGAGCACCGATTAATAACATGTAGAAGTATGTTATCACCTTATTTTTCAAAAATAAAAATCAAATCATTATCACATGGAATTTACATGTTTGATATAAATTTTAAATTCAAGGTAACTTCTATATTCAAGTTTATAAATGACGAATAGTAATAAAACAAATCATGTTTTGGGTCTATGGAGGAAAGTATAATTCCTTATTTTCACAAACAAAGTTTAACTTTAGAGAATCGTCATGGAATATTGTTCTTACAAACCATTGTTGCAAACTTGAAGAATCAAAATGGGGTTTGAAATATTTGCTTGGAAAAAAAATTAATCTTTACCTTCAAACTCAAACTAAGTTGGGCCCAATTTTAACTCTAAATGTTGATGAATTAAATGTTAATTTTCATTAAATTGCACCTCAAATTTATATATAATTGTATTCTTAACATTAAATTTTAAAAAGTGTTCCAGCGTTAATCCTATAGCAAGTTATTGTTCCAAATATGGTTAAATTAAATGTGTTATTGTGTGTATGATAAGTTTTTGCTCCAAATAGGGATAAATGTGTCTTTTATGTGTGCAATAAATGATAAAACATATGTGCAATAAGAAGTTGATACTTTTTCTAGAAAAATTTGTATTAGAGCTAAATATTTTAGTTCAAATTATTGATTTTGGACTAATTTATCAGTCAAAAGTTTTTTTTTTTTGGTGGAAAACTTTATTTGATTAAATTAATGAGTTTATGAAGATTTTTGGACTGTTTCTATTAAAATTAATGAATGAGTTAGCGAAATGGAATTGAAGATGAATATTGCATAAGTTAAATTCAAGGCAAAATTTGATGGAACTGAAAATAAATTTTTTTTTTTTCTCTCCTATGTGTTATTTTCCTGAAAGTAATAAAATTACCCTGAAAATCAAGCGACATAAAATAACAGACGAATGATATGCGTACACGTAACAATGAAACAGATAATGGTGATATCGACAAGCCTGATGCTGTTCGCTGGACGGTTCGGATTGGCTCCATCCGCAAACAGAAAATCAACGGCGGGGCTGAAGCTGGAGGCGAGGGACTCCGGGTTACAGACGGGTGACCCAGCGGGTTTCACCCTTGCTGATACTTTGGCATGTGGCAGCGTCGGCCACATCATTGGCGTCGGTGTCGTTCTTGGCCTTAAGAGCATTGGTTCACTGTAA

mRNA sequence

ATGGCAGCTACCATGATGACTTCGATCCCTCAGTTTAATGGGCTCAGGCCCACTGTTTCAGTGGCTCCGGTTCGCAGCCTGGTGGCGGTGCAACCGCTGAGGCGGAGGGGCGGCGGCGCTCTCAGTGCTCGTTGTGGTGATTACATTGGCTCACCCACCAACTTGATAATGGTGATATCGACAAGCCTGATGCTGTTCGCTGGACGGTTCGGATTGGCTCCATCCGCAAACAGAAAATCAACGGCGGGGCTGAAGCTGGAGGCGAGGGACTCCGGGTTACAGACGGGTGACCCAGCGGGTTTCACCCTTGCTGATACTTTGGCATGTGGCAGCGTCGGCCACATCATTGGCGTCGGTGTCGTTCTTGGCCTTAAGAGCATTGGTTCACTGTAA

Coding sequence (CDS)

ATGGCAGCTACCATGATGACTTCGATCCCTCAGTTTAATGGGCTCAGGCCCACTGTTTCAGTGGCTCCGGTTCGCAGCCTGGTGGCGGTGCAACCGCTGAGGCGGAGGGGCGGCGGCGCTCTCAGTGCTCGTTGTGGTGATTACATTGGCTCACCCACCAACTTGATAATGGTGATATCGACAAGCCTGATGCTGTTCGCTGGACGGTTCGGATTGGCTCCATCCGCAAACAGAAAATCAACGGCGGGGCTGAAGCTGGAGGCGAGGGACTCCGGGTTACAGACGGGTGACCCAGCGGGTTTCACCCTTGCTGATACTTTGGCATGTGGCAGCGTCGGCCACATCATTGGCGTCGGTGTCGTTCTTGGCCTTAAGAGCATTGGTTCACTGTAA

Protein sequence

MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVISTSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKSIGSL

Homology

[Close]

BLAST of Clc01G25710 vs. NCBI nr
Match: XP_038883621.1 (photosystem I reaction center subunit psaK, chloroplastic [Benincasa hispida])

HSP 1 Score: 246.9 bits (629), Expect = 9.6e-62
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MAATMMTSIPQFNGLRPTVS+APVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MAATMMTSIPQFNGLRPTVSMAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLE RDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. NCBI nr
Match: KAG7034753.1 (Photosystem I reaction center subunit psaK, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 246.1 bits (627), Expect = 1.6e-61
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MAATMMTSIPQF GLRPT+SVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MAATMMTSIPQFTGLRPTLSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. NCBI nr
Match: XP_023543618.1 (photosystem I reaction center subunit psaK, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 128/130 (98.46%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MA TMMTSIPQF GLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MATTMMTSIPQFTGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. NCBI nr
Match: KAG6581462.1 (ABC transporter C family member 12, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 245.7 bits (626), Expect = 2.1e-61
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MAATMMTSIPQF GLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MAATMMTSIPQFTGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGS 130
           VLGLKSIGS
Sbjct: 121 VLGLKSIGS 129

[Close]

BLAST of Clc01G25710 vs. NCBI nr
Match: XP_022977533.1 (photosystem I reaction center subunit psaK, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 244.2 bits (622), Expect = 6.2e-61
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MA TMMTSIPQF GLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MATTMMTSIPQFTGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEAR+SGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARESGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. ExPASy Swiss-Prot
Match: Q9SUI5 (Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSAK PE=2 SV=2)

HSP 1 Score: 203.0 bits (515), Expect = 2.1e-51
Identity = 104/131 (79.39%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPT-VSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVI 60
           MA+TMMT++PQFNGLR T +S APV+ L +VQP+RR+G GAL A+C D+IGS TNLIMV 
Sbjct: 1   MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKC-DFIGSSTNLIMVT 60

Query: 61  STSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVG 120
           ST+LMLFAGRFGLAPSANRK+TAGL+LEARDSGLQTGDPAGFTLADTLACG+VGHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKSIGSL 131
           VVLGLK+IG++
Sbjct: 121 VVLGLKNIGAI 130

[Close]

BLAST of Clc01G25710 vs. ExPASy Swiss-Prot
Match: Q9ZT05 (Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa OX=3879 GN=PSAK PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.9e-47
Identity = 96/128 (75.00%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPL-RRRGGGALSARCGDYIGSPTNLIMVI 60
           MA +MMT++PQF GLRP +  +P++ LVA QP+ RR+G GAL  RC D+IGS TN+IMV 
Sbjct: 1   MATSMMTTLPQFTGLRPQLKPSPIQGLVAAQPMTRRKGKGALGVRC-DFIGSSTNVIMVA 60

Query: 61  STSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVG 120
           ST+LMLFAGRFGLAPSANRK+TAGLKLE RDSGLQTGDPAGFTLADTLACG+VGHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLKLETRDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKSI 128
           VVLGL+++
Sbjct: 121 VVLGLRTL 127

[Close]

BLAST of Clc01G25710 vs. ExPASy Swiss-Prot
Match: P36886 (Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare OX=4513 GN=PSAK PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.1e-39
Identity = 89/125 (71.20%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 6   MTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVISTSLML 65
           MTS+PQF+GLR   + +  RS+  +  LRRR    +  RC DYIGS TNLIMV +T+LML
Sbjct: 8   MTSVPQFHGLR---TYSSPRSMATLPSLRRRRSQGI--RC-DYIGSSTNLIMVTTTTLML 67

Query: 66  FAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLK 125
           FAGRFGLAPSANRK+TAGLKLEAR+SGLQTGDPAGFTLADTLACG+VGHI+GVG+VLGLK
Sbjct: 68  FAGRFGLAPSANRKATAGLKLEARESGLQTGDPAGFTLADTLACGAVGHIMGVGIVLGLK 126

Query: 126 SIGSL 131
           + G L
Sbjct: 128 NTGVL 126

[Close]

BLAST of Clc01G25710 vs. ExPASy Swiss-Prot
Match: P14225 (Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=PSAK PE=1 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-20
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 0


Query: 29  AVQPLRRRGGGALSARCGDYIGSPTNLIMVISTSLMLFAGRFGLAPSANRKSTAGLKL-- 88
           A++P +     ++  R   +IGS TNLIMV ST+  L A RFGLAP+  + +TAGLKL  
Sbjct: 10  AIRPTKAARRSSVVVRADGFIGSSTNLIMVASTTATLAAARFGLAPTVKKNTTAGLKLVD 69

Query: 89  EARDSGLQTGDPAGFTLADTLACGSVGHIIGVGVVLGLKSIGSL 131
               +G+ + DPAGFT+ D LA G+ GH +GVG+VLGLK IG+L
Sbjct: 70  SKNSAGVISNDPAGFTIVDVLAMGAAGHGLGVGIVLGLKGIGAL 113

[Close]

BLAST of Clc01G25710 vs. ExPASy Swiss-Prot
Match: P42051 (Photosystem I reaction center subunit psaK, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 GN=PSAK PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.8e-10
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 47 DYIGSPTNLIMVISTSLMLFAGRFGLAPSANR 79
          DYIGSPTN+IMVISTSLMLFAGRFGLAPSANR
Sbjct: 2  DYIGSPTNVIMVISTSLMLFAGRFGLAPSANR 33

[Close]

BLAST of Clc01G25710 vs. ExPASy TrEMBL
Match: A0A6J1IQ95 (PSI-K OS=Cucurbita maxima OX=3661 GN=LOC111477837 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MA TMMTSIPQF GLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MATTMMTSIPQFTGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEAR+SGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARESGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. ExPASy TrEMBL
Match: A0A5A7U9C9 (PSI-K OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009450 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.9e-61
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MAATMMT +PQFNGLRPT SVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MAATMMTFVPQFNGLRPTASVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLK IGSL
Sbjct: 121 VLGLKGIGSL 130

[Close]

BLAST of Clc01G25710 vs. ExPASy TrEMBL
Match: A0A1S3AZR1 (PSI-K OS=Cucumis melo OX=3656 GN=LOC103484327 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 3.9e-61
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MAATMMT +PQFNGLRPT SVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MAATMMTFVPQFNGLRPTASVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLK IGSL
Sbjct: 121 VLGLKGIGSL 130

[Close]

BLAST of Clc01G25710 vs. ExPASy TrEMBL
Match: A0A6J1CZY3 (PSI-K OS=Momordica charantia OX=3673 GN=LOC111015785 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.1e-61
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MA TMMTSIPQF+GL+PTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MATTMMTSIPQFSGLKPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLE RDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEVRDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. ExPASy TrEMBL
Match: A0A6J1EJV0 (PSI-K OS=Cucurbita moschata OX=3662 GN=LOC111433263 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 5.1e-61
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPTVSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVIS 60
           MA TMMTSIPQF GLRPTVSVAPVRSLVAVQPLRRRGG ALSARCGDYIGSPTNLIMVIS
Sbjct: 1   MATTMMTSIPQFTGLRPTVSVAPVRSLVAVQPLRRRGGSALSARCGDYIGSPTNLIMVIS 60

Query: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120
           TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV
Sbjct: 61  TSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVGV 120

Query: 121 VLGLKSIGSL 131
           VLGLKSIGSL
Sbjct: 121 VLGLKSIGSL 130

[Close]

BLAST of Clc01G25710 vs. TAIR 10
Match: AT1G30380.1 (photosystem I subunit K )

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-52
Identity = 104/131 (79.39%), Postives = 121/131 (92.37%), Query Frame = 0


Query: 1   MAATMMTSIPQFNGLRPT-VSVAPVRSLVAVQPLRRRGGGALSARCGDYIGSPTNLIMVI 60
           MA+TMMT++PQFNGLR T +S APV+ L +VQP+RR+G GAL A+C D+IGS TNLIMV 
Sbjct: 1   MASTMMTTLPQFNGLRATKISAAPVQGLASVQPMRRKGNGALGAKC-DFIGSSTNLIMVT 60

Query: 61  STSLMLFAGRFGLAPSANRKSTAGLKLEARDSGLQTGDPAGFTLADTLACGSVGHIIGVG 120
           ST+LMLFAGRFGLAPSANRK+TAGL+LEARDSGLQTGDPAGFTLADTLACG+VGHIIGVG
Sbjct: 61  STTLMLFAGRFGLAPSANRKATAGLRLEARDSGLQTGDPAGFTLADTLACGTVGHIIGVG 120

Query: 121 VVLGLKSIGSL 131
           VVLGLK+IG++
Sbjct: 121 VVLGLKNIGAI 130

The following BLAST results are available for this feature:

BLAST of Clc01G25710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883621.1	9.6e-62	98.46	photosystem I reaction center subunit psaK, chloroplastic [Benincasa hispida]	[more]
KAG7034753.1	1.6e-61	98.46	Photosystem I reaction center subunit psaK, chloroplastic [Cucurbita argyrosperm...	[more]
XP_023543618.1	2.1e-61	98.46	photosystem I reaction center subunit psaK, chloroplastic [Cucurbita pepo subsp....	[more]
KAG6581462.1	2.1e-61	99.22	ABC transporter C family member 12, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022977533.1	6.2e-61	97.69	photosystem I reaction center subunit psaK, chloroplastic-like [Cucurbita maxima...	[more]

BLAST of Clc01G25710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUI5	2.1e-51	79.39	Photosystem I reaction center subunit psaK, chloroplastic OS=Arabidopsis thalian...	[more]
Q9ZT05	6.9e-47	75.00	Photosystem I reaction center subunit psaK, chloroplastic OS=Medicago sativa OX=...	[more]
P36886	1.1e-39	71.20	Photosystem I reaction center subunit psaK, chloroplastic OS=Hordeum vulgare OX=...	[more]
P14225	5.5e-20	50.00	Photosystem I reaction center subunit psaK, chloroplastic OS=Chlamydomonas reinh...	[more]
P42051	6.8e-10	96.88	Photosystem I reaction center subunit psaK, chloroplastic (Fragment) OS=Cucumis ...	[more]

BLAST of Clc01G25710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IQ95	3.0e-61	97.69	PSI-K OS=Cucurbita maxima OX=3661 GN=LOC111477837 PE=3 SV=1	[more]
A0A5A7U9C9	3.9e-61	96.92	PSI-K OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009450 PE=3 SV...	[more]
A0A1S3AZR1	3.9e-61	96.92	PSI-K OS=Cucumis melo OX=3656 GN=LOC103484327 PE=3 SV=1	[more]
A0A6J1CZY3	5.1e-61	96.92	PSI-K OS=Momordica charantia OX=3673 GN=LOC111015785 PE=3 SV=1	[more]
A0A6J1EJV0	5.1e-61	97.69	PSI-K OS=Cucurbita moschata OX=3662 GN=LOC111433263 PE=3 SV=1	[more]

BLAST of Clc01G25710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30380.1	1.5e-52	79.39	photosystem I subunit K	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023618	Photosystem I PsaG/PsaK domain, chloroplastic	GENE3D	1.10.286.40		coord: 47..130 e-value: 6.1E-40 score: 137.2
IPR017493	Photosystem I reaction centre subunit PsaK, chloroplastic	TIGRFAM	TIGR03050	TIGR03050	coord: 48..130 e-value: 5.9E-47 score: 155.9
IPR000549	Photosystem I PsaG/PsaK protein	PFAM	PF01241	PSI_PSAK	coord: 53..128 e-value: 1.5E-19 score: 69.8
IPR000549	Photosystem I PsaG/PsaK protein	PROSITE	PS01026	PHOTOSYSTEM_I_PSAGK	coord: 100..117
IPR016370	Photosystem I PsaG/PsaK, plant	PIRSF	PIRSF002912	PsaK	coord: 1..130 e-value: 1.1E-41 score: 140.1
IPR016370	Photosystem I PsaG/PsaK, plant	PANTHER	PTHR34195	PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED	coord: 1..130
None	No IPR available	PANTHER	PTHR34195:SF2	PHOTOSYSTEM I REACTION CENTER SUBUNIT PSAK, CHLOROPLASTIC	coord: 1..130
IPR035982	Photosystem I reaction centre subunit PsaK superfamily	SUPERFAMILY	81563	Photosystem I reaction center subunit X, PsaK	coord: 99..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G25710.1	Clc01G25710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0016020	membrane