Clc01G25700 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G25700
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	F-box protein
Location	ClcChr01: 35862952 .. 35864312 (+)
RNA-Seq Expression	Clc01G25700
Synteny	Clc01G25700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCCAAGATTTGTAATGAGATCTTGATTTGTAGCCGCCAGTGTAACCTGAACTAGTAACTAGTAAGTGTGAAAGTTTTGGACCAAAATTGAATTTAAACAACCATTCATAATGCTGTATAGATTACAATTTTTATGGATATAAACTTCAACTTATAGCAGTAGATGAAGTAGTGGTAGGTTTCTTACATTCATATTGCTAGGATAAAACTAAAGTTATGAGGATGTTCTGTATCTTTGGTGTCATTTGCCAATTTTATAGGGGTTATGGAACTGAGATATTTTTAAGAATATCTTTTATGCTGCAAATATGTCACAAGTTTGATTTGAAGCTGTGAATCAGTTTTCTCGGATATAAGAAGGAAACACAAATGCTGCCTGTCATTGCTGCAATTTCTTGTAAAAACACTATTTCTCATTCATTTTCCGTTAAATTTGTCAAATATTTCGTTAGAGTACTTCTACTCCTAGCATGATGTTGGAATTTCAATCCAATGTAGCATGTGCAATTTCATTCATTTTTCTTATCTTCATCTTCCGTTTAAGAGTAAACAAATCTCCCACTAGCCATAATGGAGAGCAGCTGCTCGTTAGTCATGTGATTCTTTGGGACAATTTTCATATGAATAAATTTCTTTGATGGTCTGTGTAATCCATGCCTTACATGTGAATATATTTTCCCTGCACATGTTTTATCTTTTATGAATTCATATTTTCCTGATTACTACGTTTCTATATTTATCAATTGCAGCTCACATCAACTTAGAAAACTCCGGATTTTATGTTCCTTTAATTTGTCAGGTGAGGGAATCGCGGCAGCAGTTTCAAAATTTCAAAATTTCCATTGTTGGAACATCTTGAAATATCTGACTCTCCATTTTCTGTGAAAACTTTGGAAACTGTTGGAAGGTGTTGCCCTCTCCTGAAATCTCTGAAACTAAACTGTCAGGCTTGCAGAGGAGAGAATGAATATGATGATGAAGTCCTTGCAATTGCTGAAAATATGCCTAATTTACGTTACCTTCAGATATGTAGCACAACCCTCTAACTGCAGGGGCTTGCAGGCCATTCTTGATGGTTGTCCTCTCTTAGAACACCTTGATTTACGCTGGTGTTTCAATTTAGAATTGGTGGGACTGTCGGGTATAAAATGTGTTGAAAGAATTAGAAATTTATGCCTTGTGATCCCATTAACTTCTCTGAAACTTGGGACGAAATTGTTGGTTATGTTGGTGATGATTCTGATGAGAAATTCACCATTGATTTGTCTGACACTGATGACGACAACGACTACTAGGATGAATTCTCAGGGGTCGGTGACTTTTCTTGTACAGTTCTTTATTTTGATTGACAGTTAA

mRNA sequence

ATGGCTCCCAAGATTTGTAATGAGATCTTGATTTGTAGCCGCCAGTGTAACCTGAACTACATGATGTTGGAATTTCAATCCAATGTAGCATGTGCAATTTCATTCATTTTTCTTATCTTCATCTTCCGTTTAAGAGTAAACAAATCTCCCACTAGCCATAATGGAGAGCAGCTGCTCGCCATTCTTGATGGTTGTCCTCTCTTAGAACACCTTGATTTACGCTGGTGTTTCAATTTAGAATTGGTGGGACTGTCGGGTATAAAATGTGTTGAAAGAATTAGAAATTTATGCCTTGTGATCCCATTAACTTCTCTGAAACTTGGGACGAAATTGTTGGTTATGTTGGTGATGATTCTGATGAGAAATTCACCATTGATTTGTCTGACACTGATGACGACAACGACTACTAGGATGAATTCTCAGGGGTCGGTGACTTTTCTTGTACAGTTCTTTATTTTGATTGACAGTTAA

Coding sequence (CDS)

ATGGCTCCCAAGATTTGTAATGAGATCTTGATTTGTAGCCGCCAGTGTAACCTGAACTACATGATGTTGGAATTTCAATCCAATGTAGCATGTGCAATTTCATTCATTTTTCTTATCTTCATCTTCCGTTTAAGAGTAAACAAATCTCCCACTAGCCATAATGGAGAGCAGCTGCTCGCCATTCTTGATGGTTGTCCTCTCTTAGAACACCTTGATTTACGCTGGTGTTTCAATTTAGAATTGGTGGGACTGTCGGGTATAAAATGTGTTGAAAGAATTAGAAATTTATGCCTTGTGATCCCATTAACTTCTCTGAAACTTGGGACGAAATTGTTGGTTATGTTGGTGATGATTCTGATGAGAAATTCACCATTGATTTGTCTGACACTGATGACGACAACGACTACTAGGATGAATTCTCAGGGGTCGGTGACTTTTCTTGTACAGTTCTTTATTTTGATTGACAGTTAA

Protein sequence

MAPKICNEILICSRQCNLNYMMLEFQSNVACAISFIFLIFIFRLRVNKSPTSHNGEQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCLVIPLTSLKLGTKLLVMLVMILMRNSPLICLTLMTTTTTRMNSQGSVTFLVQFFILIDS

Homology

[Close]

BLAST of Clc01G25700 vs. NCBI nr
Match: XP_013460577.1 (putative F-box/LRR-repeat protein 23 [Medicago truncatula] >KEH34611.1 F-box/LRR protein [Medicago truncatula] >RHN68164.1 putative F-box domain, leucine-rich repeat domain, L domain-containing protein [Medicago truncatula])

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-05
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           LLAILDGCPLLE LDLR CF+L+L G  G +C ++++NLCL
Sbjct: 217 LLAILDGCPLLESLDLRGCFHLDLSGSIGKRCKQQVKNLCL 257

[Close]

BLAST of Clc01G25700 vs. NCBI nr
Match: XP_022146630.1 (F-box protein SKIP19-like [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-05
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           L AILDGCP LE LDLR CFNL+LVG  G++C ERI++L L
Sbjct: 208 LQAILDGCPDLESLDLRQCFNLDLVGQLGVECAERIKHLRL 248

[Close]

BLAST of Clc01G25700 vs. NCBI nr
Match: XP_003541669.1 (F-box protein SKIP19 [Glycine max] >KAG4960274.1 hypothetical protein JHK87_036907 [Glycine soja] >KAG4971296.1 hypothetical protein JHK85_037717 [Glycine max] >KAG4977691.1 hypothetical protein JHK86_037165 [Glycine max] >KAG5113691.1 hypothetical protein JHK82_036960 [Glycine max] >KAG5130969.1 hypothetical protein JHK84_037366 [Glycine max])

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-05
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 56  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Sbjct: 206 EGLLAILDGCPLLESLDLRQCFNVNLAGSLGKRCAEQIKELRL 248

[Close]

BLAST of Clc01G25700 vs. NCBI nr
Match: XP_028192114.1 (F-box protein SKIP19-like [Glycine soja] >RZB82263.1 F-box protein SKIP19 [Glycine soja])

HSP 1 Score: 58.5 bits (140), Expect = 5.8e-05
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 56  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Sbjct: 206 EGLLAILDGCPLLESLDLRQCFNVNLAGSLGKRCAEQIKELRL 248

[Close]

BLAST of Clc01G25700 vs. NCBI nr
Match: PNY10395.1 (F-box protein skip19-like [Trifolium pratense])

HSP 1 Score: 57.8 bits (138), Expect = 9.9e-05
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           LLAILDGCPLLE LD+R CFNL LVG  G +C E+I+ L
Sbjct: 227 LLAILDGCPLLESLDIRQCFNLNLVGSLGKRCKEQIKYL 265

[Close]

BLAST of Clc01G25700 vs. ExPASy Swiss-Prot
Match: Q9S9V9 (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 8.4e-07
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AILDGCP LEHLDLR CFN+ LVG    +C ERI++L
Sbjct: 377 LNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIKDL 415

[Close]

BLAST of Clc01G25700 vs. ExPASy Swiss-Prot
Match: Q9M0U8 (Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 3.5e-05
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AILDGCP LEHLD+R CF + LVG    +C+E I+ L
Sbjct: 251 LNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKEL 289

[Close]

BLAST of Clc01G25700 vs. ExPASy Swiss-Prot
Match: Q9M0U7 (Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE=4 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-04
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 58  LLAILDGCP-LLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AILDGCP L EHLD+R CFN+ LVG    +C++RI+ L
Sbjct: 241 LNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKEL 280

[Close]

BLAST of Clc01G25700 vs. ExPASy Swiss-Prot
Match: Q9M0U6 (Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.0e-04
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRN 96
           L AILDGCP LE LDLR CFN+ L G    +C+ERI++
Sbjct: 220 LNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKD 257

[Close]

BLAST of Clc01G25700 vs. ExPASy TrEMBL
Match: A0A072UYT8 (F-box/LRR protein OS=Medicago truncatula OX=3880 GN=25489229 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.7e-06
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           LLAILDGCPLLE LDLR CF+L+L G  G +C ++++NLCL
Sbjct: 217 LLAILDGCPLLESLDLRGCFHLDLSGSIGKRCKQQVKNLCL 257

[Close]

BLAST of Clc01G25700 vs. ExPASy TrEMBL
Match: A0A7N2LQ85 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-05
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 45  RVNKSPTSHNGEQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           R+N +  +++G  L AILDGCP LE LDLR CFN  L G  G +CVERI+NL
Sbjct: 169 RLNGNRVTNDG--LQAILDGCPHLESLDLRKCFNFTLSGNLGKRCVERIKNL 218

[Close]

BLAST of Clc01G25700 vs. ExPASy TrEMBL
Match: A0A6J1CXS5 (F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.2e-05
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           L AILDGCP LE LDLR CFNL+LVG  G++C ERI++L L
Sbjct: 208 LQAILDGCPDLESLDLRQCFNLDLVGQLGVECAERIKHLRL 248

[Close]

BLAST of Clc01G25700 vs. ExPASy TrEMBL
Match: I1M1I2 (F-box domain-containing protein OS=Glycine max OX=3847 GN=100788317 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 56  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Sbjct: 206 EGLLAILDGCPLLESLDLRQCFNVNLAGSLGKRCAEQIKELRL 248

[Close]

BLAST of Clc01G25700 vs. ExPASy TrEMBL
Match: A0A445I880 (F-box protein SKIP19 OS=Glycine soja OX=3848 GN=D0Y65_031437 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.8e-05
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 56  EQLLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNLCL 99
           E LLAILDGCPLLE LDLR CFN+ L G  G +C E+I+ L L
Sbjct: 206 EGLLAILDGCPLLESLDLRQCFNVNLAGSLGKRCAEQIKELRL 248

[Close]

BLAST of Clc01G25700 vs. TAIR 10
Match: AT4G03630.1 (RNI-like superfamily protein )

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AI DGCP LEHLDLR CFN+ LVG    +C+ERI++L
Sbjct: 161 LNAIFDGCPHLEHLDLRQCFNINLVGDLEKRCMERIKDL 199

[Close]

BLAST of Clc01G25700 vs. TAIR 10
Match: AT4G05470.1 (RNI-like superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-06
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AILDGCP LEHLD+R CF + LVG    +C+E I+ L
Sbjct: 251 LNAILDGCPHLEHLDVRKCFRISLVGNLEKRCLEMIKEL 289

[Close]

BLAST of Clc01G25700 vs. TAIR 10
Match: AT4G05490.1 (RNI-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-06
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRN 96
           L AILDGCP LE LDLR CFN+ L G    +C+ERI++
Sbjct: 220 LNAILDGCPHLECLDLRQCFNINLFGDLERQCLERIKD 257

[Close]

BLAST of Clc01G25700 vs. TAIR 10
Match: AT4G05475.1 (RNI-like superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-06
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 58  LLAILDGCP-LLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AILDGCP L EHLD+R CFN+ LVG    +C++RI+ L
Sbjct: 241 LNAILDGCPHLEEHLDVRKCFNINLVGNLEKRCMKRIKEL 280

[Close]

BLAST of Clc01G25700 vs. TAIR 10
Match: AT5G52480.1 (RNI-like superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-05
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 58  LLAILDGCPLLEHLDLRWCFNLELVGLSGIKCVERIRNL 97
           L AILDGCP LEHLDLR C N  LVG    +C E+I++L
Sbjct: 149 LNAILDGCPHLEHLDLRQCIN--LVGNLEKRCFEKIKDL 185

The following BLAST results are available for this feature:

BLAST of Clc01G25700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_013460577.1	1.2e-05	65.85	putative F-box/LRR-repeat protein 23 [Medicago truncatula] >KEH34611.1 F-box/LRR...	[more]
XP_022146630.1	4.4e-05	68.29	F-box protein SKIP19-like [Momordica charantia]	[more]
XP_003541669.1	5.8e-05	65.12	F-box protein SKIP19 [Glycine max] >KAG4960274.1 hypothetical protein JHK87_0369...	[more]
XP_028192114.1	5.8e-05	65.12	F-box protein SKIP19-like [Glycine soja] >RZB82263.1 F-box protein SKIP19 [Glyci...	[more]
PNY10395.1	9.9e-05	69.23	F-box protein skip19-like [Trifolium pratense]	[more]

BLAST of Clc01G25700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S9V9	8.4e-07	66.67	Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana OX=3702 GN=FBL23 PE...	[more]
Q9M0U8	3.5e-05	58.97	Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana OX=3702 GN=FBL21 PE...	[more]
Q9M0U7	1.0e-04	60.00	Putative F-box protein At4g05475 OS=Arabidopsis thaliana OX=3702 GN=At4g05475 PE...	[more]
Q9M0U6	1.0e-04	60.53	Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE...	[more]

BLAST of Clc01G25700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A072UYT8	5.7e-06	65.85	F-box/LRR protein OS=Medicago truncatula OX=3880 GN=25489229 PE=4 SV=1	[more]
A0A7N2LQ85	1.6e-05	57.69	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A6J1CXS5	2.2e-05	68.29	F-box protein SKIP19-like OS=Momordica charantia OX=3673 GN=LOC111015784 PE=4 SV...	[more]
I1M1I2	2.8e-05	65.12	F-box domain-containing protein OS=Glycine max OX=3847 GN=100788317 PE=4 SV=1	[more]
A0A445I880	2.8e-05	65.12	F-box protein SKIP19 OS=Glycine soja OX=3848 GN=D0Y65_031437 PE=4 SV=1	[more]

BLAST of Clc01G25700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03630.1	1.0e-07	64.10	RNI-like superfamily protein	[more]
AT4G05470.1	2.5e-06	58.97	RNI-like superfamily protein	[more]
AT4G05490.1	7.3e-06	60.53	RNI-like superfamily protein	[more]
AT4G05475.1	7.3e-06	60.00	RNI-like superfamily protein	[more]
AT5G52480.1	2.8e-05	61.54	RNI-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G25700.2	Clc01G25700.2	mRNA