Clc01G25520 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc01G25520
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Metallo-hydrolase/oxidoreductase superfamily protein
Location	ClcChr01: 35735062 .. 35737863 (+)
RNA-Seq Expression	Clc01G25520
Synteny	Clc01G25520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCCCCTGCCGTGTTTGCTCTTAGGCACTGACGATTCCTTACGAGCCTCAACCCAAATTACAGGTGATTTCATCAGTTTGCTTGTTTCTGACTCTACTTCGAGGCTTTTATGGTCATCTCTCTGGAGCATGGATTTGGACTTCGTTGCATCTAGACTACGCTGCATCGTTTGTTTTCTTCTTCGTTTTTGGAACAATGGTCTGAGGCAATCGATTCAACTTCATGGTAGCATAAATGAAGAAAGAGCAGGTCCTATTTCACTTGAAACTGTGGTTTTCTGATCCATTAGTTGAAATTTCTTCACTGCGCAATTTAAGTTGTAACTGGACCTAGGTATATGCTCCCCGACGCAGTTGCTTGCAGTTTTATTGTCCTCGTTTTGTCCGTTATACACGAGTCGCTACGGCGTAGATACTAAACCGAGTTTTGTATATTTACAGATGCAACACATCAATGCTCATTGATTATTGTCAAAGCAACGGTGAGCTTTACATATTTGATTGATGTAGGGAAGCCGTTTTTAGGGAGCTAGTTCTAAGATGGTTTACTCGCCATAAGGTTTTTCAAGTGGATTCTGTGAGTCGTTTTCACTTGCTTTGTATGTTTTTATGTAAGTGATGTATGATTTGTTGCAAAATTTTAAAATAAAACGCATAGATAATTATGATCAGGAAGTTATTTCTCTCTGCCGTCCATTATTGCTTTCAGAAGCATTTTTTGTTTGTCTTGGTTTCACATCTGCACTTTCAACGTATTTCAACCTGATATGGATTACATTTCTACTTTGCCGTTTTTTGAAAAATGAAATTTCATTATCCTCTTAGTCAAAGAACATTTTCTTTGCAATAAATTTGACTCTTACTGTCCCCGGACATGTTTCTTTTTCTTTCAAAATTCTTCAGATTATTTTGACTCATGAACATGCGGATGCGATTCTTGGTTTGGATGATATACGTGTTGTGCAACCTTTTAGTGCCACAAATGAAATTAACCTGACGCCCGTTTACCTTGCACAAGATATGAATATGACAGAGAGGTACATGTGTGGCCACCTTTTCTTTCCTTTTTCTTTAGATTATTCCCCATAGCATCTTACCTCATAATTAATTGGCCATGGAGTTCTTTGCCTTTGTTTTAAATATTGAGCAAGCTACTTGTTCAAAGATATTTTATCAGATGGACTAGATGTCTGATGATGGAAGAATTCCTATTTGGCACAAAATGTGGAGGCTTTTAACTTTTTTTTTTTTTTTTTTCTTTCTCTGAGATACAATTTTTCAGAACGTGTTATTTTGCTTCTGGGACTCTTCCAGATAATTAAATGCATAACAATCAATGAAAGTCAGCGTGGTTTTCTTTTAAATGCCGAACATTCTTTTCTTGCTCCTTGCCATCCAATAACCTCTGAAAAGGTTCCTTGTAACTCCTGTACCTCTATGCAATTGAGCTGTAATTTATTGTGCAGTAGCCTTTTCTGTTTTTTGGTGTAGCAATGAGGTTACCGTACTTGGTGCAAAAAGAGCTTAGAGAGGGCCAGGAAGTCAACTAGCTCACACGGTTCGTTTTATTTGAAGCCTTTTTTCCTATATTGTTTGGCTTCCCAACTCCTTCACCTCATGTATTTATTTCTGTCCCCTGGATATTTTCAGTGATTACTTACTCCCTCTACTTTAATCTGAATTTTGAACCATTTTATTTTGTTGACACTTTATCAGAGTTGTTTAATGAATTAGACATTTTAAGGTATACGCAATACCACAAATTTTAATTTACTTGATATATACATATGCACTCATGAGGTAGTAAACGTATAGTTAATCAATCATGTGAATGTGAAATACTGTTGCCCATTGTTCAATGTCAAATGTGAGGTGGGCAATGCTTTGTTTAAACAAAAGTTGACGCACATATGGAGGTGCTATAAATTTTTTCAAGTATACTTGCACCACCATCTCGATCAGTGGTTCAACTACAAGAAGTTGAAGTACAACCAAATAGCAGAACCAAACAACAGTCTAATGACCTCTGTTATTTATGTTCTAATTTTCTCTGTTGGCAATCTTCTATATAAGAGATTGCAAAAGTTGTCTTGATCTTCTTAATTACTCTTTTTTCATCCTTAATTCGCATCAGTCCTTGGGAGTATTCTTAGATTAATCTTGGACATTATTAGAAGTGTTCACTGGAGAAACTTTTATTGACTGATGCCAATGAAATTAACCTTGTATCTGTTTTCTGCGTTGGAGATAGTTTTAGATTCTGCATTTCACCTTCTCATTACAGACTAAATCCCACAATGTCCATTTCTGCCTTCGGCAGGTTTTGTAGACATCTTTATGAGTTTGGTTTTTAGTATCCCGTAATTAGAAATTATATCTCTTGGTCTTTTGACAGACTCTTGAAGCAGTGAAAAGGATATGCCAAAGCAAGCCATGCTATTTGGAACGGGTCATGGATTTGATCACCACATGGATAATGAGTTCCTTAACCAATGGCCCAAAAGGTATAAAATTTACAATCTGGTCCTAAAATTGGAACTAATTAAGTTATAAATATTCATTCAATGACTGTCCAGCACATGGCTGTCAAGATATAGAGATCGTTCCACTGTTCCAAAGTGATTCTACTATCTTTGAAGGTCTAAAAATGAAGTAGGAGGGAGATGGTTTTTTTCATCTTGTACGGTTAGCTTTACCAAGATGGGATTTTCAGTACTGATCTTTATGTCCTATCATCGTACTGATTCAGGGAAGGAATTCCAGTGCAGCTTGCTCATGATGGTCTTAGAATCTCTATAG

mRNA sequence

ATGATCCCCCTGCCGTGTTTGCTCTTAGGCACTGACGATTCCTTACGAGCCTCAACCCAAATTACAGGTGATTTCATCAGTTTGCTTGTTTCTGACTCTACTTCGAGGCTTTTATGGTCATCTCTCTGGAGCATGGATTTGGACTTCGTTGCATCTAGACTACGCTGCATCGTTTGTTTTCTTCTTCGTTTTTGGAACAATGGTCTGAGGCAATCGATTCAACTTCATGGTAGCATAAATGAAGAAAGAGCAGATGCAACACATCAATGCTCATTGATTATTGTCAAAGCAACGATTATTTTGACTCATGAACATGCGGATGCGATTCTTGGTTTGGATGATATACGTGTTGTGCAACCTTTTAGTGCCACAAATGAAATTAACCTGACGCCCGTTTACCTTGCACAAGATATGAATATGACAGAGAGCAATGAGAGAGGGCCAGGAAGTCAACTAGCTCACACGACTCTTGAAGCAGTGAAAAGGATATGCCAAAGCAAGCCATGCTATTTGGAACGGGTCATGGATTTGATCACCACATGGATAATGAGTTCCTTAACCAATGGCCCAAAAGGGAAGGAATTCCAGTGCAGCTTGCTCATGATGGTCTTAGAATCTCTATAG

Coding sequence (CDS)

ATGATCCCCCTGCCGTGTTTGCTCTTAGGCACTGACGATTCCTTACGAGCCTCAACCCAAATTACAGGTGATTTCATCAGTTTGCTTGTTTCTGACTCTACTTCGAGGCTTTTATGGTCATCTCTCTGGAGCATGGATTTGGACTTCGTTGCATCTAGACTACGCTGCATCGTTTGTTTTCTTCTTCGTTTTTGGAACAATGGTCTGAGGCAATCGATTCAACTTCATGGTAGCATAAATGAAGAAAGAGCAGATGCAACACATCAATGCTCATTGATTATTGTCAAAGCAACGATTATTTTGACTCATGAACATGCGGATGCGATTCTTGGTTTGGATGATATACGTGTTGTGCAACCTTTTAGTGCCACAAATGAAATTAACCTGACGCCCGTTTACCTTGCACAAGATATGAATATGACAGAGAGCAATGAGAGAGGGCCAGGAAGTCAACTAGCTCACACGACTCTTGAAGCAGTGAAAAGGATATGCCAAAGCAAGCCATGCTATTTGGAACGGGTCATGGATTTGATCACCACATGGATAATGAGTTCCTTAACCAATGGCCCAAAAGGGAAGGAATTCCAGTGCAGCTTGCTCATGATGGTCTTAGAATCTCTATAG

Protein sequence

MIPLPCLLLGTDDSLRASTQITGDFISLLVSDSTSRLLWSSLWSMDLDFVASRLRCIVCFLLRFWNNGLRQSIQLHGSINEERADATHQCSLIIVKATIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQDMNMTESNERGPGSQLAHTTLEAVKRICQSKPCYLERVMDLITTWIMSSLTNGPKGKEFQCSLLMMVLESL

Homology

[Close]

BLAST of Clc01G25520 vs. NCBI nr
Match: KAG6419354.1 (hypothetical protein SASPL_121574 [Salvia splendens])

HSP 1 Score: 74.3 bits (181), Expect = 1.4e-09
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 84  ADATHQCSLIIVKAT----IILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQDMN 143
           ++  H+  LI V  T    IILTHEHADA+LGLDDIR VQPFS TN+IN TPVYL QD  
Sbjct: 76  SEGKHKYILIDVGKTFREQIILTHEHADAVLGLDDIRAVQPFSPTNDINPTPVYLTQDSM 135

Query: 144 MTESNERGPGSQLAHTTLEAVKRICQSKPCYLERVMDLITTWIMSSLTNGP----KGKEF 198
            + + +     Q      + V+R+ Q    Y+E   DL   +I S L   P     G+++
Sbjct: 136 ESIAVKFPYLVQKKLKPGQEVRRVTQLDWKYIE--SDLTKPFIASGLQFVPLPVMHGEDY 195

[Close]

BLAST of Clc01G25520 vs. NCBI nr
Match: XP_041991821.1 (putative hydrolase C777.06c [Salvia splendens] >XP_041991822.1 putative hydrolase C777.06c [Salvia splendens])

HSP 1 Score: 73.6 bits (179), Expect = 2.3e-09
Identity = 47/104 (45.19%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 98  TIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQDMNMTESNERGPGSQLAHTTL 157
           +IILTHEHADA+LGLDDIR VQPFS TN+IN TPVYL QD   + + +     Q      
Sbjct: 109 SIILTHEHADAVLGLDDIRAVQPFSPTNDINPTPVYLTQDSMESIAVKFPYLVQKKLKPG 168

Query: 158 EAVKRICQSKPCYLERVMDLITTWIMSSLTNGP----KGKEFQC 198
           + V+R+ Q    Y+E   DL   +I S L   P     G+++ C
Sbjct: 169 QEVRRVTQLDWKYIE--SDLTKPFIASGLQFVPLPVMHGEDYVC 210

[Close]

BLAST of Clc01G25520 vs. NCBI nr
Match: XP_022146510.1 (putative hydrolase C777.06c [Momordica charantia])

HSP 1 Score: 72.4 bits (176), Expect = 5.2e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 98  TIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQD 138
           +IILTHEHADA+LGLDDIR VQPFS+TNEIN TPVYL QD
Sbjct: 132 SIILTHEHADAVLGLDDIRDVQPFSSTNEINPTPVYLTQD 171

[Close]

BLAST of Clc01G25520 vs. NCBI nr
Match: XP_041995505.1 (putative hydrolase C777.06c isoform X1 [Salvia splendens] >XP_041995506.1 putative hydrolase C777.06c isoform X1 [Salvia splendens])

HSP 1 Score: 71.6 bits (174), Expect = 8.8e-09
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 90  CSLIIVKATIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQD 138
           C  I    +IILTHEHADA+LGLDDIR VQPFS TN+IN TPVYL QD
Sbjct: 101 CHKIPQVDSIILTHEHADAVLGLDDIRAVQPFSPTNDINPTPVYLTQD 148

[Close]

BLAST of Clc01G25520 vs. NCBI nr
Match: RZC12420.1 (putative hydrolase [Glycine soja])

HSP 1 Score: 71.6 bits (174), Expect = 8.8e-09
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 83  RADATHQCSLI----IVKATIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQ 137
           ++DATH+  LI      + TI+LTHEHADA+LGLDDIR VQPFS TN+I+ TP+YL +
Sbjct: 60  QSDATHKYILIDAGKTFRETILLTHEHADAVLGLDDIRAVQPFSPTNDIDPTPIYLTR 117

[Close]

BLAST of Clc01G25520 vs. ExPASy TrEMBL
Match: A0A4D8YJQ2 (Lactamase_B domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_044516 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.6e-10
Identity = 52/122 (42.62%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 84  ADATHQCSLIIVKAT----IILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQDMN 143
           ++  H+  LI V  T    IILTHEHADA+LGLDDIR VQPFS TN+IN TPVYL QD  
Sbjct: 76  SEGKHKYILIDVGKTFREQIILTHEHADAVLGLDDIRAVQPFSPTNDINPTPVYLTQDSM 135

Query: 144 MTESNERGPGSQLAHTTLEAVKRICQSKPCYLERVMDLITTWIMSSLTNGP----KGKEF 198
            + + +     Q      + V+R+ Q    Y+E   DL   +I S L   P     G+++
Sbjct: 136 ESIAVKFPYLVQKKLKPGQEVRRVTQLDWKYIE--SDLTKPFIASGLQFVPLPVMHGEDY 195

[Close]

BLAST of Clc01G25520 vs. ExPASy TrEMBL
Match: A0A6J1CXF2 (putative hydrolase C777.06c OS=Momordica charantia OX=3673 GN=LOC111015713 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.5e-09
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 0


Query: 98  TIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQD 138
           +IILTHEHADA+LGLDDIR VQPFS+TNEIN TPVYL QD
Sbjct: 132 SIILTHEHADAVLGLDDIRDVQPFSSTNEINPTPVYLTQD 171

[Close]

BLAST of Clc01G25520 vs. ExPASy TrEMBL
Match: A0A445KNB7 (Putative hydrolase OS=Glycine soja OX=3848 GN=D0Y65_012286 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-09
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 83  RADATHQCSLI----IVKATIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQ 137
           ++DATH+  LI      + TI+LTHEHADA+LGLDDIR VQPFS TN+I+ TP+YL +
Sbjct: 60  QSDATHKYILIDAGKTFRETILLTHEHADAVLGLDDIRAVQPFSPTNDIDPTPIYLTR 117

[Close]

BLAST of Clc01G25520 vs. ExPASy TrEMBL
Match: A0A4D8XSK4 (Lactamase_B domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_001064 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-09
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 90  CSLIIVKATIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQD 138
           C  I    +IILTHEHADA+LGLDDIR VQPFS TN+IN TPVYL QD
Sbjct: 101 CHKIPQVDSIILTHEHADAVLGLDDIRAVQPFSPTNDINPTPVYLTQD 148

[Close]

BLAST of Clc01G25520 vs. ExPASy TrEMBL
Match: A0A0E0RK14 (Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 9.5e-09
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 85  DATHQCSLIIVKAT----IILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQ 137
           + TH+  LI V  T    IILTHEHADAILGLDD+R+VQPFS TN+I  TP+YL+Q
Sbjct: 493 EVTHKYILIDVGKTFREQIILTHEHADAILGLDDVRIVQPFSPTNDIEPTPIYLSQ 548

[Close]

BLAST of Clc01G25520 vs. TAIR 10
Match: AT1G30300.1 (Metallo-hydrolase/oxidoreductase superfamily protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 28/39 (71.79%), Postives = 36/39 (92.31%), Query Frame = 0


Query: 98  TIILTHEHADAILGLDDIRVVQPFSATNEINLTPVYLAQ 137
           +IILTHEHADA+LGLDDIR VQPFS TN+I+ TP++++Q
Sbjct: 110 SIILTHEHADAVLGLDDIRSVQPFSPTNDIDPTPIFVSQ 148

[Close]

BLAST of Clc01G25520 vs. TAIR 10
Match: AT4G03610.1 (Metallo-hydrolase/oxidoreductase superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.2e-05
Identity = 36/90 (40.00%), Postives = 47/90 (52.22%), Query Frame = 0


Query: 56  CIVC----FLLRFWNNGLRQSIQLHGSINEERADATHQCSLIIV----KATIILTHEHAD 115
           C VC     LL   N   R +  L      +  D  H+  LI V    +  IILTHEHAD
Sbjct: 38  CHVCSQSLSLLPHLNPNYRCNTSLLIDYCSKEEDGRHKYILIDVGKSFREQIILTHEHAD 97

Query: 116 AILGLDDIRVVQPFSAT-NEINLTPVYLAQ 137
           A+ GLD+IR +QP  AT  + +  PV+L+Q
Sbjct: 98  AVHGLDEIRSLQPRGATIVDTDPLPVFLSQ 127

[Close]

BLAST of Clc01G25520 vs. TAIR 10
Match: AT4G03610.2 (Metallo-hydrolase/oxidoreductase superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.1e-04
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 98  TIILTHEHADAILGLDDIRVVQPFSAT-NEINLTPVYLAQ 137
           +IILTHEHADA+ GLD+IR +QP  AT  + +  PV+L+Q
Sbjct: 103 SIILTHEHADAVHGLDEIRSLQPRGATIVDTDPLPVFLSQ 142

The following BLAST results are available for this feature:

BLAST of Clc01G25520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6419354.1	1.4e-09	42.62	hypothetical protein SASPL_121574 [Salvia splendens]	[more]
XP_041991821.1	2.3e-09	45.19	putative hydrolase C777.06c [Salvia splendens] >XP_041991822.1 putative hydrolas...	[more]
XP_022146510.1	5.2e-09	85.00	putative hydrolase C777.06c [Momordica charantia]	[more]
XP_041995505.1	8.8e-09	72.92	putative hydrolase C777.06c isoform X1 [Salvia splendens] >XP_041995506.1 putati...	[more]
RZC12420.1	8.8e-09	60.34	putative hydrolase [Glycine soja]	[more]

BLAST of Clc01G25520 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc01G25520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4D8YJQ2	6.6e-10	42.62	Lactamase_B domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_044...	[more]
A0A6J1CXF2	2.5e-09	85.00	putative hydrolase C777.06c OS=Momordica charantia OX=3673 GN=LOC111015713 PE=4 ...	[more]
A0A445KNB7	4.3e-09	60.34	Putative hydrolase OS=Glycine soja OX=3848 GN=D0Y65_012286 PE=4 SV=1	[more]
A0A4D8XSK4	4.3e-09	72.92	Lactamase_B domain-containing protein OS=Salvia splendens OX=180675 GN=Saspl_001...	[more]
A0A0E0RK14	9.5e-09	64.29	Uncharacterized protein OS=Oryza rufipogon OX=4529 PE=4 SV=1	[more]

BLAST of Clc01G25520 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G30300.1	1.7e-10	71.79	Metallo-hydrolase/oxidoreductase superfamily protein	[more]
AT4G03610.1	2.2e-05	40.00	Metallo-hydrolase/oxidoreductase superfamily protein	[more]
AT4G03610.2	1.1e-04	57.50	Metallo-hydrolase/oxidoreductase superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc01G25520.1	Clc01G25520.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016787	hydrolase activity