
Clc01G25420 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTAAAAGAGAGAGAGAGAAAAAAAAGTGTAGAAGAAGGAGAACGAAAGAATCAAAGATGGCAGCTTTCTGCGATCTCTTATGTAGAAGTGGAAGGAGTATTTTTGGGGACACTGCTCACGGTGGTGAAGCAAATAAATAGGAGTAGCGATGCCATTGCCATTGACAACCCGATCGATTCCTCTCTTCCGAGGCACTGTAACGAAAAACCCTAATTCAAATTCCGGGAGACGACGACGACGACCCTGATTCTGTCATTTGGGGAATACCAAATATGGGTCCCAATACGAAGACCCACTTCAGAGATTGAGCTTTTTTTCATGCCCTCTCCCATCTCTCTGTCGATTCCCTTTCCTTTCTTTCGAGACGCATCCATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACCGCCTCCGCCTTCTTTTGACCCCAGTCGAAGTAATATTTCTTTCTCCATCTTCGTTTTCTGACTCTGAGGGGTTTCTTTCTACTCGTTGTTGCTCGATGAAATTTTTCGTTTGTTGGGTTTTGTTAGGTATTGAATGTCGTTTTGGGGATTTATTAGGGTTGGGTGGTTCTGATCTGAACTCTCGAGTAATGGGGTTGTTGTTTTTTAAGCACTTGAGATTGATGGATTTAAACATTCTAGCTATGGGAATGGGCGAATTGGCTCCCCTCTTCTTTATGATATTGTAGCAACAAACTGTAATTTTTTATCTTGTCCGTGAGTTTTTTACTTTGAACTTGGACATTCAGGTTTTGAAACTGTAGTTTTTTACTTTGAACTTGGACATTCAGGTTTTGAAACTGTTTTTCAATCTTTGGGTTTGCCGCTTTGTTGTATGAGATGGTAAAGTAGAGTTGATCCATTCCCAATTTGAATGGTAGAGCAGAGATGTTTTAAGAGACGTTTCTTCTTAAAATTTTCCAGTTCCATGGATTGTAATTGTACTGATCAGTTTTTTCTCTTTCTCTTTTGAAGTGATTGGTATCATTAAACGGAAGGCCTTGATAAAAGAACTAGCTGCTGCGTATCACGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTTCAAAGAAAGTGGGACGAGGTATGTAATTCAGCCTTATATTCCTTCTGCTTCAATGTTTTTTTTTCTTGGGACGTTCTATCAAAATGATTCAATACTTGAGCTGTCAAAATTTTCTTTGATCGAGCAACTATACTAGCGAATCACTAATCTCTGGTCATTGTCTATGAATATTCCTTCTGTTTCAATGTTTTCTTCTTGGGACGTTTTATCAAAACGATTCACTACTTAAATTTTCTTTGATCGAGCAACTATACTAGCGAACCATTAATCCCTGGTCGTTTTCTATGAACCAGATGTTTGAACTGCAGATTTTTGCCACAGACAAGTTTTACTGATCATAATAATTATAGTTTCTTTCACTGTCGGAAAATCATTCAATGTGGCTGCATTATAATAACGGTTGGATTAAAAAATTTGCATGCCCCCTAATAAACCACTAGATATAAATTTGAAGTAGTTCTCTCATAAATCCAATGGCAAAACACTGTTAGCCACATTGGATAATTCCTCTTCATTGTGCAATGGATATCTGTGTGATTCCAGATTTGTAACCTTCGATTATTCACCTGTGCTTACCACAGGGTTATGAGGATTATAATATACTAGGTCTGTGGCTGGCAATTTATTTCTGGTAGTTATACTTATATCTTTGATTATAAGCTATTAAGGAACGTGGCTTTAGGTAGCAATTAGCCATAGAGAAAATATTTGTGGAGAATTCATATTGAGGTAGAGAATTTGTATGGATGGCTGAGATATTTTAACTAAACATAGATTCCGTTTTCATGATGGTGATGGTATTCCGGATCTGAGAGATTCTTCTACATGTTGAAAAATCCAATGATTTAATTTAAAGTTTCTTTACTTACTCATTGTTTCTTTATCTGCTTGCAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAGACAATGAAGCCTAGCAAACGTCAAAGGAAATCCCGCTAGGTATTTAATAAGCATTTTAGGAATTGGTTAGTTAATCCTCTACCAAGCTTTTTGTAACTTTTAGTCTCATATGGGGAATTATTTTTTTCCTTCTTTTCGTTTTATAAAATAATAACAGTAGGCGTTGCGGCCGAGGTTATGCCGTATAATATTTGATTTAAAAAAAAAAAAAGCCATGAGAATAAACCAGTTTGGTAACTTTCTGGTTTTTGGTCTTTTGAATATTAAGCCTATAAATGCTGAGTCTCTTTGTTTTGTTTCTACTTTTTACAAATATTTTCAAAATCCACATCAAGTTTTGAAACTTGAAAGAAAATACTGGTTTTTGGAATTTAGAATGTGAGCCATGAATTTAAAAATAGTTTACAATTGATTATTGAATGGGACCTTAATTTTCTAAATGGAATGGTGATCGTTCTTAAAATTTATCAAAGTGGAATATGAGGACTTGTGATTACTTAACATACTTGATGCATTCAACATAGAACCTTTCTGCTTTTCCAGTGCAAACATATTTCTTGAGTTAGCAATTCTTGTTACCTTTCTACCATCTCTTAATCTTTTTTTTCTCCCTCTCTTGCAGGCAATAAATATATTTGATGCTCCTAACTTGACTTGCGAATCTGATGGTTCTTCCGTTCTGCAAGACTCAAGAGAGACTTATGCGCAAGATTGATAGTCTGCTATGAATTGGCTGATTACTCTATGGATCCAACAATTTGTACACTCAGTTATGAAAACAGTGAAGTATATAAAGTATCTGTGTGCTGTAGCCTGTATGTATTCAATTTTTGTGCGATAATATCGCTACACAGCGGTAGGATTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTCAGCAAAAGCAGGCTTGCAGAATTTTTTTGTTCACAACCTTTGAATTATAGATTTCATTTCCTCTTC CTTAAAAGAGAGAGAGAGAAAAAAAAGTGTAGAAGAAGGAGAACGAAAGAATCAAAGATGGCAGCTTTCTGCGATCTCTTATGTAGAAGTGGAAGGAGTATTTTTGGGGACACTGCTCACGGTGGTGAAGCAAATAAATAGGAGTAGCGATGCCATTGCCATTGACAACCCGATCGATTCCTCTCTTCCGAGGCACTGTAACGAAAAACCCTAATTCAAATTCCGGGAGACGACGACGACGACCCTGATTCTGTCATTTGGGGAATACCAAATATGGGTCCCAATACGAAGACCCACTTCAGAGATTGAGCTTTTTTTCATGCCCTCTCCCATCTCTCTGTCGATTCCCTTTCCTTTCTTTCGAGACGCATCCATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACCGCCTCCGCCTTCTTTTGACCCCAGTCGAAGTATTGAATGTCGTTTTGGGGATTTATTAGGGTTGGGTGGTTCTGATCTGAACTCTCGAGCCTTGATAAAAGAACTAGCTGCTGCGTATCACGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTTCAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAGACAATGAAGCCTAGCAAACGTCAAAGGAAATCCCGCTAGGCAATAAATATATTTGATGCTCCTAACTTGACTTGCGAATCTGATGGTTCTTCCGTTCTGCAAGACTCAAGAGAGACTTATGCGCAAGATTGATAGTCTGCTATGAATTGGCTGATTACTCTATGGATCCAACAATTTGTACACTCAGTTATGAAAACAGTGAAGTATATAAAGTATCTGTGTGCTGTAGCCTGTATGTATTCAATTTTTGTGCGATAATATCGCTACACAGCGGTAGGATTTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTCAGCAAAAGCAGGCTTGCAGAATTTTTTTGTTCACAACCTTTGAATTATAGATTTCATTTCCTCTTC ATGCCCTCTCCCATCTCTCTGTCGATTCCCTTTCCTTTCTTTCGAGACGCATCCATGGCTGACGAATCGCAACAACCCCAATCTGAATCTCAACCTCCGCTCGAAGTCGATTCTGCACCTCCGCCACCGCCTCCGCCTTCTTTTGACCCCAGTCGAAGTATTGAATGTCGTTTTGGGGATTTATTAGGGTTGGGTGGTTCTGATCTGAACTCTCGAGCCTTGATAAAAGAACTAGCTGCTGCGTATCACGCTGAGTGTCTTGTATACTGCCAAGAGCTTCTTGAGCTTCAAAGAAAGTGGGACGAGCCATATATTGAGTTAAAAGCACCTGATGATCCAAGAAAGGAGACAATGAAGCCTAGCAAACGTCAAAGGAAATCCCGCTAG MPSPISLSIPFPFFRDASMADESQQPQSESQPPLEVDSAPPPPPPPSFDPSRSIECRFGDLLGLGGSDLNSRALIKELAAAYHAECLVYCQELLELQRKWDEPYIELKAPDDPRKETMKPSKRQRKSR Homology
BLAST of Clc01G25420 vs. NCBI nr
Match: KAG7034738.1 (hypothetical protein SDJN02_04468, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 160.2 bits (404), Expect = 1.2e-35 Identity = 90/111 (81.08%), Postives = 95/111 (85.59%), Query Frame = 0
BLAST of Clc01G25420 vs. NCBI nr
Match: XP_004134646.1 (uncharacterized protein LOC101211064 [Cucumis sativus] >KGN49417.1 hypothetical protein Csa_003828 [Cucumis sativus]) HSP 1 Score: 159.1 bits (401), Expect = 2.6e-35 Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Clc01G25420 vs. NCBI nr
Match: XP_008439608.1 (PREDICTED: uncharacterized protein LOC103484351 [Cucumis melo] >KAA0052527.1 uncharacterized protein E6C27_scaffold120G001280 [Cucumis melo var. makuwa] >TYK13298.1 uncharacterized protein E5676_scaffold255G009190 [Cucumis melo var. makuwa]) HSP 1 Score: 159.1 bits (401), Expect = 2.6e-35 Identity = 88/112 (78.57%), Postives = 94/112 (83.93%), Query Frame = 0
BLAST of Clc01G25420 vs. NCBI nr
Match: XP_038881750.1 (uncharacterized protein LOC120073165 isoform X1 [Benincasa hispida]) HSP 1 Score: 158.7 bits (400), Expect = 3.4e-35 Identity = 86/110 (78.18%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Clc01G25420 vs. NCBI nr
Match: KAG6581445.1 (hypothetical protein SDJN03_21447, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 157.9 bits (398), Expect = 5.8e-35 Identity = 89/111 (80.18%), Postives = 94/111 (84.68%), Query Frame = 0
BLAST of Clc01G25420 vs. ExPASy TrEMBL
Match: A0A5D3CQ43 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009190 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 88/112 (78.57%), Postives = 94/112 (83.93%), Query Frame = 0
BLAST of Clc01G25420 vs. ExPASy TrEMBL
Match: A0A0A0KM14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G524060 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 84/110 (76.36%), Postives = 93/110 (84.55%), Query Frame = 0
BLAST of Clc01G25420 vs. ExPASy TrEMBL
Match: A0A1S3AZS8 (uncharacterized protein LOC103484351 OS=Cucumis melo OX=3656 GN=LOC103484351 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 88/112 (78.57%), Postives = 94/112 (83.93%), Query Frame = 0
BLAST of Clc01G25420 vs. ExPASy TrEMBL
Match: A0A6J1KMP8 (uncharacterized protein LOC111497089 OS=Cucurbita maxima OX=3661 GN=LOC111497089 PE=4 SV=1) HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31 Identity = 86/130 (66.15%), Postives = 101/130 (77.69%), Query Frame = 0
BLAST of Clc01G25420 vs. ExPASy TrEMBL
Match: A0A6J1EGC9 (uncharacterized protein LOC111433847 OS=Cucurbita moschata OX=3662 GN=LOC111433847 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 2.7e-30 Identity = 85/130 (65.38%), Postives = 100/130 (76.92%), Query Frame = 0
BLAST of Clc01G25420 vs. TAIR 10
Match: AT4G18400.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 74.7 bits (182), Expect = 6.0e-14 Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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