Clc01G25280 (gene) Watermelon (cordophanus) v2

Overview
NameClc01G25280
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionVQ domain-containing protein
LocationClcChr01: 35520307 .. 35520771 (-)
RNA-Seq ExpressionClc01G25280
SyntenyClc01G25280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCAGAAGCATAAAAGGCTTAGAAGAAGAAAATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAAATCCATTTTCTTTTTTCTCTTTACTCATACATCATTTTTCTTTTCCCAATATCCCTTCTAACATTCTTCATTGGGAATTTTTATTCTTTTTTTTCTCCGGAAGTATTTTTCTTTTGGTA

mRNA sequence

CGCAGAAGCATAAAAGGCTTAGAAGAAGAAAATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAAATCCATTTTCTTTTTTCTCTTTACTCATACATCATTTTTCTTTTCCCAATATCCCTTCTAACATTCTTCATTGGGAATTTTTATTCTTTTTTTTCTCCGGAAGTATTTTTCTTTTGGTA

Coding sequence (CDS)

ATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAA

Protein sequence

MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD
Homology
BLAST of Clc01G25280 vs. NCBI nr
Match: XP_038881537.1 (VQ motif-containing protein 10-like [Benincasa hispida])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 90/111 (81.08%), Postives = 93/111 (83.78%), Query Frame = 0

Query: 1   MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAE 60
           M N+ K    EVRVVVIE HHIQTDVSNFKSVVQSLTGK SSAVEGGGESC+KRQRVVAE
Sbjct: 1   MGNSKKTATAEVRVVVIEYHHIQTDVSNFKSVVQSLTGKHSSAVEGGGESCKKRQRVVAE 60

Query: 61  NN-------FNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
           NN       FN GRR+EESRKMIPTTSFKDLD LL LHLPSMEDLNWIWTD
Sbjct: 61  NNESIINIDFNDGRRYEESRKMIPTTSFKDLDRLLSLHLPSMEDLNWIWTD 111

BLAST of Clc01G25280 vs. NCBI nr
Match: KAA0052539.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK13287.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26
Identity = 72/101 (71.29%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 4   NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNF 63
           N KK A EVRVV+IE HHIQTD SNFKSVVQSLTGK SS  E GGE CRKRQRVVA NN 
Sbjct: 3   NPKKTA-EVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRVVARNNN 62

Query: 64  NGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
                  +S KMI T SFKDLD LL L LPSMEDL+WI TD
Sbjct: 63  ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 102

BLAST of Clc01G25280 vs. NCBI nr
Match: KGN49401.1 (hypothetical protein Csa_003856 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24
Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0

Query: 4   NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVE-GGGESCRKRQRVVAENN 63
           NSKK A EVRVV+IE HHIQTD SNFKSVVQSLTGK S A E  GGE CRKRQRVV++NN
Sbjct: 23  NSKKTA-EVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQRVVSQNN 82

Query: 64  FNGG-RRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
            +       +  KMI T SFKDLD LL L LPSMEDLNWI TD
Sbjct: 83  NHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124

BLAST of Clc01G25280 vs. NCBI nr
Match: KAG7034723.1 (hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24
Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0

Query: 1   MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAE 60
           MA++    AG V+VV+IE HH+ TDVS+FKSVVQ+LTGK SSAVEGGG +CRKR RV  E
Sbjct: 1   MADSKNTPAGGVKVVLIEYHHVHTDVSSFKSVVQTLTGKHSSAVEGGGGTCRKRPRVEVE 60

Query: 61  NNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
            ++        +   + +TSFKDLD  L LHLP++EDLNWIW D
Sbjct: 61  KSY-----MNRTASFLHSTSFKDLDRFLNLHLPALEDLNWIWAD 99

BLAST of Clc01G25280 vs. NCBI nr
Match: KAG6581431.1 (hypothetical protein SDJN03_21433, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.9 bits (302), Expect = 6.3e-24
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0

Query: 1   MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAE 60
           MA++    AG V+VV+IE HH+ TDVSNFKSVVQ+LTGK SSAVEGGG +C KR RV  E
Sbjct: 1   MADSKNTPAGGVKVVLIEYHHVHTDVSNFKSVVQTLTGKHSSAVEGGGGTCGKRPRVEVE 60

Query: 61  NNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
            ++        +   + +TSFKDLD  L LHLP++EDLNWIW D
Sbjct: 61  KSY-----MNRTASFLHSTSFKDLDRFLNLHLPALEDLNWIWAD 99

BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A5D3CN21 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009060 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27
Identity = 72/101 (71.29%), Postives = 75/101 (74.26%), Query Frame = 0

Query: 4   NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNF 63
           N KK A EVRVV+IE HHIQTD SNFKSVVQSLTGK SS  E GGE CRKRQRVVA NN 
Sbjct: 3   NPKKTA-EVRVVLIEYHHIQTDASNFKSVVQSLTGKHSSTAEDGGEICRKRQRVVARNNN 62

Query: 64  NGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
                  +S KMI T SFKDLD LL L LPSMEDL+WI TD
Sbjct: 63  ESIININQSVKMIHTASFKDLDRLLSLELPSMEDLDWILTD 102

BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A0A0KNW8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.2e-25
Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0

Query: 4   NSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVE-GGGESCRKRQRVVAENN 63
           NSKK A EVRVV+IE HHIQTD SNFKSVVQSLTGK S A E  GGE CRKRQRVV++NN
Sbjct: 23  NSKKTA-EVRVVLIEYHHIQTDASNFKSVVQSLTGKHSPAAEDDGGEICRKRQRVVSQNN 82

Query: 64  FNGG-RRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
            +       +  KMI T SFKDLD LL L LPSMEDLNWI TD
Sbjct: 83  NHESITNINQRVKMIHTKSFKDLDRLLALELPSMEDLNWILTD 124

BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A6J1EF02 (VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433561 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16
Identity = 64/114 (56.14%), Postives = 75/114 (65.79%), Query Frame = 0

Query: 1   MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAE 60
           MAN+  K AG V+VV IE HHIQTDV+NFKSVVQ+LTG  S+A   GG + +KR+  V E
Sbjct: 1   MANS--KAAGPVKVVFIEYHHIQTDVTNFKSVVQTLTGMNSTA---GGNTRKKRR--VDE 60

Query: 61  NNFNG-GRRFEESRKMIPT--------TSFKDLDG-LLGLHLPSMEDLNWIWTD 105
           N  +    RFEES +   T        TSF+DLD  LL L LPSMEDLNWIW D
Sbjct: 61  NIIDARSARFEESTESCETDTTSSLQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A6J1KT83 (VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16
Identity = 62/113 (54.87%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 1   MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAE 60
           MAN+  K AG V+VV IE HHIQTDVSNFKSVVQ+LTG  S+A    G + RK+ RV   
Sbjct: 1   MANS--KAAGPVKVVFIEYHHIQTDVSNFKSVVQTLTGMNSTA----GGNTRKKPRVDEN 60

Query: 61  NNFNGGRRFEES--------RKMIPTTSFKDLDG-LLGLHLPSMEDLNWIWTD 105
                  RFEES           + +TSF+DLD  LL L LPSMEDLNWIW D
Sbjct: 61  IIDVRSARFEESTVSCETDTTSSVQSTSFEDLDPLLLKLELPSMEDLNWIWAD 107

BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A6J1CYB0 (uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015700 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 12  VRVVVIECHHIQTDVSNFKSVVQSLTG---KKSSAVEG----GGESCRKRQR---VVAEN 71
           V+VV+IE HH+QTDVSNFKSVVQSLTG   + SSA+       G++ ++R+R     A N
Sbjct: 7   VKVVLIEYHHVQTDVSNFKSVVQSLTGNAKRSSSALPDTSFPAGDTTKRRRRDLDSAAAN 66

Query: 72  NFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
                     +   + T SFKDLD LL  +LPS++DL+WIW D
Sbjct: 67  QTIIQTTATTTPFDLHTMSFKDLDRLLKFNLPSVQDLDWIWAD 109

BLAST of Clc01G25280 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.8e-04
Identity = 35/118 (29.66%), Postives = 53/118 (44.92%), Query Frame = 0

Query: 1   MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKS----------SAVEG---- 60
           M+   K  +  ++VV I   +++TD  +FK+VVQ LTGK +          SA +G    
Sbjct: 1   MSGRGKVKSEPMKVVFINTQYVETDARSFKTVVQELTGKNAIVAAGPFDSPSAFDGRCYD 60

Query: 61  GGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD 105
           GG    +  R +      GGR       M  TT F      L   +P ME+L  +W++
Sbjct: 61  GGSKIGEDTRQLHGGGGGGGR-------MGTTTEF----DRLFKEMPHMEELYKLWSE 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038881537.11.7e-4081.08VQ motif-containing protein 10-like [Benincasa hispida][more]
KAA0052539.11.4e-2671.29VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK13287.1 VQ mot... [more]
KGN49401.11.3e-2469.90hypothetical protein Csa_003856 [Cucumis sativus][more]
KAG7034723.13.7e-2457.69hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6581431.16.3e-2457.69hypothetical protein SDJN03_21433, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CN216.6e-2771.29VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A0A0KNW86.2e-2569.90VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=... [more]
A0A6J1EF021.1e-1656.14VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC11143356... [more]
A0A6J1KT831.4e-1654.87VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 ... [more]
A0A6J1CYB01.7e-1147.57uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
Match NameE-valueIdentityDescription
AT1G78410.17.8e-0429.66VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 22..42
e-value: 2.6E-8
score: 33.2
NoneNo IPR availablePANTHERPTHR34777:SF1VQ MOTIF-CONTAINING PROTEIN 10coord: 1..104
IPR039608VQ motif-containing protein 1/10PANTHERPTHR34777VQ MOTIF-CONTAINING PROTEIN 10coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc01G25280.1Clc01G25280.1mRNA