Clc01G25280 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGCAGAAGCATAAAAGGCTTAGAAGAAGAAAATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAAATCCATTTTCTTTTTTCTCTTTACTCATACATCATTTTTCTTTTCCCAATATCCCTTCTAACATTCTTCATTGGGAATTTTTATTCTTTTTTTTCTCCGGAAGTATTTTTCTTTTGGTA CGCAGAAGCATAAAAGGCTTAGAAGAAGAAAATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAAATCCATTTTCTTTTTTCTCTTTACTCATACATCATTTTTCTTTTCCCAATATCCCTTCTAACATTCTTCATTGGGAATTTTTATTCTTTTTTTTCTCCGGAAGTATTTTTCTTTTGGTA ATGGCAAATAATTCGAAGAAGGGGGCGGGGGAAGTGAGGGTGGTGGTAATTGAGTGCCACCATATTCAGACCGATGTTTCCAACTTCAAGTCCGTCGTTCAAAGTCTCACCGGAAAGAAGTCCTCCGCGGTGGAGGGCGGTGGAGAGAGCTGTAGAAAGAGGCAGCGAGTAGTGGCGGAGAATAATTTTAATGGCGGACGCCGGTTTGAAGAAAGTCGTAAGATGATCCCCACGACGTCGTTTAAGGATTTGGATGGGTTGCTCGGCCTTCACCTTCCTTCTATGGAGGATCTCAACTGGATTTGGACTGACTAA MANNSKKGAGEVRVVVIECHHIQTDVSNFKSVVQSLTGKKSSAVEGGGESCRKRQRVVAENNFNGGRRFEESRKMIPTTSFKDLDGLLGLHLPSMEDLNWIWTD Homology
BLAST of Clc01G25280 vs. NCBI nr
Match: XP_038881537.1 (VQ motif-containing protein 10-like [Benincasa hispida]) HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40 Identity = 90/111 (81.08%), Postives = 93/111 (83.78%), Query Frame = 0
BLAST of Clc01G25280 vs. NCBI nr
Match: KAA0052539.1 (VQ motif-containing protein 1-like [Cucumis melo var. makuwa] >TYK13287.1 VQ motif-containing protein 1-like [Cucumis melo var. makuwa]) HSP 1 Score: 129.8 bits (325), Expect = 1.4e-26 Identity = 72/101 (71.29%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of Clc01G25280 vs. NCBI nr
Match: KGN49401.1 (hypothetical protein Csa_003856 [Cucumis sativus]) HSP 1 Score: 123.2 bits (308), Expect = 1.3e-24 Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0
BLAST of Clc01G25280 vs. NCBI nr
Match: KAG7034723.1 (hypothetical protein SDJN02_04453, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 121.7 bits (304), Expect = 3.7e-24 Identity = 60/104 (57.69%), Postives = 75/104 (72.12%), Query Frame = 0
BLAST of Clc01G25280 vs. NCBI nr
Match: KAG6581431.1 (hypothetical protein SDJN03_21433, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 120.9 bits (302), Expect = 6.3e-24 Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0
BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A5D3CN21 (VQ motif-containing protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G009060 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 6.6e-27 Identity = 72/101 (71.29%), Postives = 75/101 (74.26%), Query Frame = 0
BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A0A0KNW8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G523420 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 6.2e-25 Identity = 72/103 (69.90%), Postives = 77/103 (74.76%), Query Frame = 0
BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A6J1EF02 (VQ motif-containing protein 10-like OS=Cucurbita moschata OX=3662 GN=LOC111433561 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 1.1e-16 Identity = 64/114 (56.14%), Postives = 75/114 (65.79%), Query Frame = 0
BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A6J1KT83 (VQ motif-containing protein 10 OS=Cucurbita maxima OX=3661 GN=LOC111497400 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 1.4e-16 Identity = 62/113 (54.87%), Postives = 71/113 (62.83%), Query Frame = 0
BLAST of Clc01G25280 vs. ExPASy TrEMBL
Match: A0A6J1CYB0 (uncharacterized protein LOC111015700 OS=Momordica charantia OX=3673 GN=LOC111015700 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.7e-11 Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 0
BLAST of Clc01G25280 vs. TAIR 10
Match: AT1G78410.1 (VQ motif-containing protein ) HSP 1 Score: 40.8 bits (94), Expect = 7.8e-04 Identity = 35/118 (29.66%), Postives = 53/118 (44.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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